The complete mitochondrial genome of a threatened loach (Sinibotia reevesae) and its phylogeny

Yuan‑Chao Zou,Bi‑Wen Xie,Chuan‑Jie Qin,Yong‑Ming Wang,Deng‑Yue Yuan,Rui Li,Zheng‑Yong Wen 한국유전학회 2017 Genes & Genomics Vol.39 No.7

In present study, the complete mitochondrial genome of Sinibotia reevesae was first sequenced using the next-generation sequencing technology and annotated using bioinformatic tools. The circular mitochondrial genome was 16,572 bp in length, and contained 13 proteincoding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 displacement loop locus. It presents a typical gene organization and order for completely sequenced cypriniformes mitogenomes. The control region could be divided into three parts included the extended termination associated sequence domain, the central conserved domain and the conserved sequence block. Interestingly, two stemloop domains were found in control region and OL region, respectively. Furthermore, phylogenetic analyses using concatenated amino acid and nucleotide sequences of the 13 protein-coding genes with two different methods (Maximum likelihood and Bayesian analysis) both highly supported the close relationship of S. reevesae and Sinibotia superciliaris, which was in line with the previous classifications based on morphological and molecular studies. These data provide useful information for a better understanding of the mitogenomic diversities and evolution in fish as well as novel genetic markers for studying population genetics and species identification.

Metabolism of α-Actin, Expression of α-Actin mRNA and MHC mRNA Induced by Exhaustive Eccentric Exercise in Skeletal Muscles of Rats and Effects of Acupuncture on Them

Wang, Rui Yuan,Yuan, Yu He,Zhang, Wen Dong,Zhao, Lin,Xun, Chuu Yan 한국체육무용국제교류학회 2001 한국체육무용국제교류학회지 Vol.7 No.-

The purpose of this study is to investigate the changes of α-actin metabolism, α-actin mRNA and MHC mRNA expression in skeletal muscles of rats after one set exhaustive eccentric exercise and the effects of acupuncture on them. 130 adult male SD rats were randomly divided into the sedentary group and the exercise group. The rats of the exercise group were again divided into the acupuncture group and non-acupuncture group. According to the sampling time, the exercise group (the acupuncture and non-acupuncture group) was divided into 12 groups, that is the 0 hours, 6 hours, 12 hours, 24 hours, 48 hours and 72 hours groups. In each group there were ten rats. The rats weighting 205±23.3 (mean±SE) were maintained at 23±1℃. They were fed in different chests taking food and drink freely. The rats of the exercise group carried out continuous downhill running with the speed of 16m/min for about 4 hours until exhaustion on the animal treadmill (degree -16°). The rats of the acupuncture group were treated with acupuncture immediately after exhaustive eccentric exercise, but those of the sedentary group and the non-acupuncture group were treated without acupuncture. They were the control groups. The muscle samples were taken immediately, 6 hours, 12 hours, 24 hours, 48 hours and 72 hours after exercise. The contents of G-actin, F-actin and T-actin in skeletal muscles of rats were measured by means of Dnase I assay. The gene expression of α-actin m RNA and MHC isoforms mRNA were determined by using the quantitative reverse transcription PCR technology. Compared with the sedentary group, there was no remarkable change of T-actin after exercise. The decrease G-actin could be detected only immediately after exercise. The content of F-actin was significantly higher than that of the sedentary group 0~6 hours after exercise, but 12~24 hours after exercise it decreased to a lower level than that of the sedentary group. A delayed increase of F-actin depolymerization presented after exercise. The F-actin value of the acupuncture group was improved in a lower range than that of the non-acupuncture group 0~6 hours after exercise, but 12~24 hours after exercise it was remarkably higher than those of the non-acupuncture group. It was shown that acupuncture could regulate the F-actin concentration in skeletal muscles of rats after exercise. Furthermore, the regulation might be bilateral. Acupuncture could stop the increase of F-actin delayed depolymerization induced by high loading exercise. The gene expression of α-actin mRNA in skeletal muscles of rats decreased significantly after one set exhaustive exercise. The duration of its recovery was longer than 72 hours. It might be that acupuncture accelerated the recovery process of α-actin mRNA expression after exercise. The MHC mRNA expression of the non-acupuncture group was lower than that of the sedentary group 6~12 hours after exercise. There appeared a delayed excess expression of MHC mRNA 48 hours after exercise. The curve of the change of the total MHC mRNA expression in the acupuncture groups was similar to that in the non-acupuncture group. The duration of recovery of the acupuncture group was shorter, the delayed excess expression of MHC mRNA was ahead of time and its range was higher than that of non-acupuncture group. It was shown that acupuncture could promote the recovery of MHC mRNA expression after exercise of high load

Identification of a Novel Human Lysophosphatidic Acid Acyltransferase, LPAAT-theta, Which Activates mTOR Pathway

( Wen Wen Tang ),( Jian Yuan ),( Xin Ya Chen ),( Xiu Ting Gu ),( Kun Tian Luo ),( Jie Li ),( Bo Wan ),( Ying Li Wang ),( Long Yu ) 생화학분자생물학회 2006 BMB Reports Vol.39 No.5

Hollow-structured Pd/TiO2 as a dual functional photocatalyst for methyl orange oxidation and selective reduction of nitrate into nitrogen

Wen-Min Wang,Shi-Jer Tseng,Yu-Shuan Huang,Qian-Yuan Wu,Wen-Long Wang,Jerry J. Wu 한국공업화학회 2023 Journal of Industrial and Engineering Chemistry Vol.119 No.-

Nitrate pollution in wastewater has posed a threat to human health and the environment. Photocatalyticreduction is a promising technology to remove nitrate due to its high adaptability, low cost, and high efficiency. However, there is a great challenge to design photocatalyst with high nitrate reduction and highselectivity of nitrogen (N2) yield. In this study, a novel hollow-structured Pd/TiO2 (PHT1) photocatalyst issynthesized with large specific surface area (SBET) and pore volume, strong UV adsorption, high reductionpotential than nitrate to nitrite, high charge transfer rate, and low electron-hole recombination rate. PHT1 exhibits a superior photocatalytic activity on the removal of methyl orange and nitrate. In addition,PHT1 exhibits high N2 selectivity (>95 %). A lower pH can promote the reduction of nitrate and the selectivityof N2 by PHT1. Electrons (e-) and CO2– are the main active species for nitrate reduction with OH asauxiliary radicals. Three main pathways for nitrate reduction are proposed: i) the reaction with formicacid under acidic conditions; ii) the reduction by electrons and the loaded Pd of photocatalyst to captureelectrons to inhibit electron-hole recombination; iii) the reduction by CO2 – generated from formic acidoxidation by OH.

Application of Subway Foundation Pit Engineering Risk Assessment:A case study of Qingdao Rock Area, China

Yuan-shun Shen,Peng Wang,Mei-ping Li,Qi-wen Mei 대한토목학회 2019 KSCE JOURNAL OF CIVIL ENGINEERING Vol.23 No.11

The foundation pit construction risk of subway stations is affected by various uncertain factors, which cannot be analyzed quantitatively by current methods. A synthetic evaluation index system for foundation pit construction risk of subway stations is established by analyzing the factors that influence subway station construction. Based on the hierarchy of these factors, a model of three-stage fuzzy synthetic evaluation is proposed, an analytic hierarchy process is used to determine the weight of each stage factor, the fuzzy sets method is used to determine the membership function, and risk ranking is carried out. The proposed method is applied to a subway station construction of the Qingdao Subway Line No. 3 Project. The simulation results show that the method is reasonable and that it should be practical and helpful for other similar projects.

Chemical and Pharmacological Studies of Saponins with a Focus on American Ginseng

Yuan, Chun-Su,Wang, Chong-Zhi,Wicks, Sheila M.,Qi, Lian-Wen The Korean Society of Ginseng 2010 Journal of Ginseng Research Vol.34 No.3

Asian ginseng (Panax ginseng) and American ginseng (Panax quinquefolius L.) are the two most recognized ginseng botanicals. It is believed that the ginseng saponins called ginsenosides are the major active constituents in both ginsengs. Although American ginseng is not as extensively studied as Asian ginseng, it is one of the best selling herbs in the US, and has garnered increasing attention from scientists in recent years. In this article, after a brief introduction of the distribution and cultivation of American ginseng, we discuss chemical analysis of saponins from these two ginsengs, i.e., their similarities and differences. Subsequently, we review pharmacological effects of the saponins, including the effects on the cardiovascular system, immune system, and central nervous system as well as the anti-diabetes and anti-cancer effects. These investigations were mainly derived from American ginseng studies. We also discuss evidence suggesting that chemical modifications of ginseng saponins would be a valuable approach to develop novel compounds in drug discovery.

Regulation of Nrf2 Transactivation Domain Activity by p160 RAC3/SRC3 and Other Nuclear Co-Regulators

( Wen Lin ),( Guo Xiang Shen ),( Xiao Ling Yuan ),( Mohit R. Jain ),( Si Wang Yu ),( Ai Hua Zhang ),( J. Don Chen ),( Ah Ng Tony Kong ) 생화학분자생물학회 2006 BMB Reports Vol.39 No.3

Establishment and Application of Polymerase Spiral Reaction Amplification for Salmonella Detection in Food

( Wenli Xu ),( Jun Gao ),( Haoyue Zheng ),( Chaowen Yuan ),( Jinlong Hou ),( Liguo Zhang ),( Guoqing Wang ) 한국미생물생명공학회(구 한국산업미생물학회) 2019 Journal of microbiology and biotechnology Vol.29 No.10

Salmonella is a common zoonotic and foodborne pathogen that causes high morbidity and mortality in developing countries. In this study, we established and validated a polymerase spiral reaction (PSR) assay which targeted the conserved invasion gene (invA) of Salmonella by SYBR Green I indicator methods. Subsequently, assays for determination of the optimal conditions for optimal specificity and sensitivity of PSR were performed. We performed comprehensive evaluations using loop-mediated isothermal amplification (LAMP) and realtime PCR. A total number of 532 samples of daily food were analyzed by PSR. Twenty-seven bacterial strains were tested in the specificity assay, from which positive results were obtained only for 14-Salmonella strains. However, none of the 13 non-Salmonella strains was amplified. Similarly with LAMP and real-time PCR, the detection limit of the PSR assay was 50 CFU/ml. The PSR method was also successfully applied to evaluate the contamination with Salmonella in 532 samples of daily food, corroborating traditional culture method data. The novel PSR method is simple, sensitive, and rapid and provides new insights into the prevention and detection of foodborne diseases.

Functional Evaluation of Transplanted Kidneys with Reduced Field-of-View Diffusion-Weighted Imaging at 3T

Yuan Xie,Yanjun Li,Jiqiu Wen,Xue Li,Zhe Zhang,Jianrui Li,Yan’e Zhao,Peng Wang,Jun Zhang,Ying Tian,Long Jiang Zhang,Guang Ming Lu 대한영상의학회 2018 Korean Journal of Radiology Vol.19 No.2

Objective: To determine the feasibility of reduced field-of-view diffusion-weighted imaging (rFOV DWI) with multi-b values to detect functional variability in transplanted kidneys. Materials and Methods: Using a 3T MRI scanner, multi-b rFOV DWI of transplanted kidney or native kidney was performed in 40 renal transplantation recipients and 18 healthy volunteers. The patients were stratified, according to an estimated glomerular filtration rate (eGFR): Group 1, eGFR ≥ 60 mL/min/1.73 m2; Group 2, eGFR ≥ 30 mL/min/1.73 m2 and < 60 mL/min/1.73 m2; Group 3, eGFR < 30 mL/min/1.73 m2. Total apparent diffusion coefficient (ADCT), perfusion-free ADC (ADCD) and perfusion fraction (FP) of kidneys were calculated and compared among the four groups. Correlations between the imaging results and eGFR were assessed. Results: All volunteers had eGFR ≥ 60 mL/min/1.73 m2, while 16, 16, and 8 patients were included in Groups 1, 2, and 3, respectively. In the renal cortex, ADCT was higher in Group 1 ([1.65 ± 0.13] x 10-3 mm2/s) than Group 3 ([1.44 ± 0.11] x 10-3 mm2/s) (p < 0.05), and the inter-group differences of FP values were significant (all p < 0.05) (0.330 ± 0.024, 0.309 ± 0.019, 0.278 ± 0.033, and 0.250 ± 0.028 for control group, Groups 1, 2, and 3, respectively). Renal cortical ADCT, ADCD, FP, and renal medullary ADCT and FP correlated positively with eGFR (r = 0.596, 0.403, 0.711, 0.341, and 0.323, respectively; all p < 0.05). When using 0.278 as the cutoff value, renal cortical FP had a sensitivity of 97.1% and a specificity of 66.7% for predicting decreased renal function. Conclusion: Multi-b rFOV DWI presents transplanted kidneys with high resolution, which is a promising functional tool for non-invasively monitoring function of transplanted kidneys.

Chlorophyll Fluorescence Characteristics and Rapid Light Response Curves of Alpine Rhododendron

Yuan-Huan Liu,Fang-Li Liu,Bo Long,Xiong-Li Zhou,Xue Zhang,Yue Zhang,Wen-Li Wang,Shi-Kang Shen 한국원예학회 2019 원예과학기술지 Vol.37 No.4

The aim of this study was to determine the photosynthetic adaptability of Rhododendron species toalpine environments. The chlorophyll fluorescence parameters and rapid light response curves ofeight Rhododendron species were determined under field conditions across elevation gradients (atelevations of 2,950, 3,560, 3,660, 3,770, and 4,030 m) in the Jiaozi Mountain National NaturalReserve, Yunnan Province, southwestern China. The effect of different elevations, species, and theirinteractions significantly affected most of the chlorophyll fluorescence and rapid light response curveparameters. The variable to maximum fluorescence ratio (Fv/Fm) ranged from 0.78 to 0.81 at the fiveelevation gradients. This result indicated that the studied species were well grown and adapted to thecurrent environment. The correlation analysis indicated that the elevation was positively significantlycorrelated with the photochemical efficiency of photosystem II, electron transport rate, maximumelectron transport rate, light saturation coefficient (Ek), and chlorophyll relative content (SPAD: leafchlorophyll content index) and was negatively significantly correlated with photochemicalquenching, nonphotochemical quenching, and linear initial slope values. Although no significantrelationship was observed between the elevations and Fv/Fm, the apparent difference in Fv/Fm both atelevation gradients and elevation × species levels indicated that the Rhododendron speciesdemonstrated species-specific adaptation to the environment at different elevations. Our resultsprovided evidence that Rhododendron species exhibit variations in photosynthetic activities in analpine environment at different elevations. These differences may improve the understanding of thephysiological adaptation variations of Rhododendron species across elevation gradients in associationwith climate change in the mountains of southwestern China.