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( Myoung Sug Kim ),( Lyu Jin Jun ),( Soon Bum Shin ),( Myoung Ae Park ),( Sung Hee Jung ),( Kwang Il Kim ),( Kyung Ho Moon ),( Hyun Do Jeong ) 한국미생물 · 생명공학회 2010 Journal of microbiology and biotechnology Vol.20 No.12
The full-length genes gyrB (2,415 bp), parC (2,277 bp), and parE (1,896 bp) in Edwardsiella tarda were cloned by PCR with degenerate primers based on the sequence of the respective quinolone resistance-determining region (QRDR), followed by elongation of 5` and 3` ends using cassette ligation-mediated PCR (CLMP). Analysis of the cloned genes revealed open reading frames (ORFs) encoding proteins of 804 (GyrB), 758 (ParC), and 631 (ParE) amino acids with conserved gyrase/topoisomerase features and motifs important for enzymatic function. The ORFs were preceded by putative promoters, ribosome binding sites, and inverted repeats with the potential to form cruciform structures for binding of DNA-binding proteins. When comparing the deduced amino acid sequences of E. tarda GyrB, ParC, and ParE with those of the corresponding proteins in other bacteria, they were found to be most closely related to Escherichia coil GyrB (87.6% identity), Klebsiella pneumoniae ParC (78.8% identity), and Salmonella Typhimurium ParE (89.5% identity), respectively. The two topoisomerase genes, parC and parE, were found to be contiguous on the E. tarda chromosome. All 18 quinolone-resistant isolates obtained from Korea thus far did not contain subunit alternations apart from a substitution in GyrA (Ser8→Arg). However, an alteration in the QRDR of ParC (Ser84→Ile) following an amino acid substitution in GyrA (Asp87→Gly) was detected in E. tarda mutants selected in vitro at 8 μg/ml ciprofloxacin (CIP). A mutant with a GyrB (Ser464→Leu) and GyrA (Asp87→Gly) substitution did not show a significant increase in the minimum inhibitory concentration (MIC) of CIP. None of the in vitro mutants exhibited mutations in parE. Thus, gyrA and parC should be considered to be the primary and secondary targets, respectively, of quinolones in E. tarda.
Complete genome sequence and comparative genome analysis of Streptococcus parauberis KCTC11980
Seo, Jung Soo,Kwon, Mun Gyeong,Hwang, Jee Youn,Jung, Sung Hee,Han, Hyun Ja,Kim, Myoung Sug,Do, Jeong-Wan,Park, Myoung Ae,Kim, Dong-Wook,Cho, Wang Sik,Lee, Kyungho Springer-Verlag 2015 Genes & Genomics Vol.37 No.11
서정수 ( Jung Soo Seo ),전은지 ( Eun Ji Jun ),정승희 ( Sung Hee Jung ),김명석 ( Myoung Sug Kim ),박명애 ( Myoung Ae Park ),이철호 ( Chul Ho Lee ),한명철 ( Myoung Chul Han ),김진우 ( Jin Woo Kim ),지보영 ( Bo Young Jee ) 한국어병학회 2010 한국어병학회지 Vol.23 No.1
2006년부터 2008년까지 국내로 회귀하는 연어(O. keta)의 소상위치, 암수 및 근육 부위별 아니사키스형 유충의 감염상을 조사하였다. 3년 동안 강에서 채집된 연어 17마리와 바다에서 채집된 13마리의 아니사키스형 유충의 감염율을 조사한 결과, 강에서 채집된 연어의 수컷 및 암컷은 마리 당 아니사키스형 유충이 각각 평균 98±27 및 103±27 마리씩 감염되어져 있었다. 바다에서 채집된 연어의 수컷 및 암컷은 마리 당 아니사키스형 유충이 각각 평균 63±18 및 108±17마리씩 감염되어져 있었고, 암수 및 소상위치간의 아니사키스형 유충의 감염 마리수에서 통계학적 차이는 없는 것으로 나타났다. 아니사키스형 유충의 근육 부위별로 조사하면 복강내측 근육 (abdominal muscle)에 85%가 기생하며, 내장기관에는 거의 유충이 발견되지 않았다. 동정된 아니사키스형 유충은 Anisakis type이 74%며, 나머지는 Contracacecum type로 분류되었다. 연어 근육내에서 아니사키스형 유충의 저온처리에 따른 생존율을 조사하였을시에 최소 6시간 이상의 냉동보존 (-20℃)만이 아니사키스형 유충이 죽는다는 사실을 알 수 있었다. The infestation status of anisakid type larvae was investigated in migrating chum salmon (Oncorhynchus keta), with different condition (captured area, sex, body portion) during 2006~2008. The mean infection number of anisakid larvae per individual female and male fish captured from Namdae river was 98±27, 103±27, respectively. The mean infection number of anisakid larvae per individual female and male fish captured from the coastal area of Yangyang was 63±18 and 108±17, respectively. The anisakid larvae were mainly found in abdominal muscles (85%) but only a little in the visceral portion. Two types of anisakid larvae (A. simplex, Contracaecum type) were identified but other anisakid larvae were not detected. To investigate the effect of storing temperature on the viability of anisakid larvae, the section of abdominal muscle were stored at different temperature (room temperature, 4℃, -20℃, -80℃). As a result, it was necessary to store at -20℃ for more than 6 hrs to kill the larvae. The present results revealed that chum salmon caught in Korea are heavily infected with anisakid larvae, mainly in the abdominal muscle, and A. simplex was dominantly found in this study.
양식 넙치, Paralichthys olivaceus에서 분리된 Edwardsiella tarda, Vibrio spp., Streptococcus spp.의 항균제 내성 경향
김명석 ( Myoung Sug Kim ),서정수 ( Jung Soo Seo ),박명애 ( Myoung Ae Park ),조지영 ( Ji Young Cho ),황지연 ( Jee Youn Hwang ),권문경 ( Mun Gyeong Kwon ),정승희 ( Sung Hee Jung ) 한국어병학회 2010 한국어병학회지 Vol.23 No.1
넙치 병원성 세균에 대한 항균제 내성율과 다제내성을 조사하고자 연구를 수행하였다. 우리나라의 양식 넙치 (Paralichthys olivaceus)에서 161균주가 분리되었고 분리균주에는 Edwardsiella tarda (n=32), Vibrio ichthyoenteri (n=37), Vibrio spp. (n=54), Streptococcus parauberis (n=28) 그리고 Streptococcus spp. (n=10)가 포함되었다. E. tarda 분리균주는 tetracycline (84.4%)과 oxolinic acid (71.9%)에 높은 내성율을 나타내었고 V. ichthyoenteri와 Vibrio spp.는 ampicillin(94.6%, 81.5%)과 tetracycline (56.8%, 42.6%) 순서로 높은 내성율을 나타내었다. S. parauberis 분리균주는 ampicillin (57.1%), tetracycline (57.1%), erythromycin (35.7%) 순서로 높은 내성율을 보였다. E. tarda의 84.4%, V. ichthyoenteri의 73.0%, Vibrio spp.의 57.4%, S. parauberis의 42.8% 그리고 Streptococcus spp.의 70.0%가 2종류 이상의 항균제에 다제내성을 나타내었다. In this study, we carried out research on the level of single and multi-drug resistance of bacteria isolated from cultured flounder Paralichthys olivaceus. One hundred sixty one bacteria were isolated from cultured olive flounder Paralichthys olivaceus in Korea and the isolates consisted of Edwardsiella tarda (n=32), Vibrio ichthyoenteri (n=37), Vibrio spp. (n=54), Streptococcus parauberis (n=28) and Streptococcus spp. (n=10). These E. tarda isolates were highly resistant in the order of tetracycline (84.4%) and oxolinic acid (71.9%). V. ichthyoenteri and Vibrio spp. showed resistance ampicillin (94.6% and 81.5%) and tetracycline (56.8% and 42.6%). S. parauberis isolates were resistant ampicillin (57.1%), tetracycline (57.1%) and erythromycin (35.7%). Of the isolates, 84.4% of E. tarda, 73.0% of V. ichthyoenteri, 57.4% of Vibrio spp., 42.8% of S. parauberis and 70.0% of Streptococcus spp. isolates exhibited multi-drug resistance against more than two antibiotics.
양식 넙치 (Paralichthys olivaceus) 에서 분리된 Edwardsiella tarda에 대한 항균제 MIC 값 분포
김명석 ( Myoung Sug Kim ),조지영 ( Ji Young Cho ),서정수 ( Jung Soo Seo ),정승희 ( Sung Hee Jung ),최혜승 ( Hye Sung Choi ),박명애 ( Myoung Ae Park ) 한국어병학회 2012 한국어병학회지 Vol.25 No.3
The minimum inhibitory concentration (MIC) of eight antibiotics against Edwardsiella tarda 49 strains isolated from olive flounder (Paralichthys olivaceus) was determined by the broth microdilution method. E. tarda showed 38.8% and 61.2% resistance to ampicillin and amoxicillin. Both resistance rates of E. tarda were 4.1% against ciprofloxacin and norfloxacin. The MIC50 values of oxytetracycline, amoxicillin and oxolinic acid were 64 ㎍/㎖, 32 ㎍/㎖and 4 ㎍/㎖. The MIC50 value to ciprofloxacin was 0.25 ㎍/㎖which was lowest among eight antibiotics tested.
( Myoung Sug Kim ),( Sung Hee Jung ),( Su Hee Hong ),( Hyun Do Jeong ) 한국수산과학회(구 한국수산학회) 2015 Fisheries and Aquatic Sciences Vol.18 No.4
Biotyping of Vibrio vulnificus strains isolated from marine environments along the south coast of Korea showed that the majority of the isolates (94.7%) belonged to biotype 1 and the remaining isolates (5.3%) belonged to biotype 2. Analysis of 16S rRNA V. vulnificus strains isolated from marine environments using a multiplex polymerase chain reaction (PCR) revealed that 78.7% were type A and 21.3% were type B. Random amplified polymorphic DNA (RAPD) was used to analyze the genomic differences in V. vulnificus among the biotype 2 strains isolated from marine environments (newly isolated strains group) and reference strains obtained from infected eels (reference strains group). The two groups had distinctly different profiles of the amplicons produced from RAPD. Additionally, biochemical comparison of these strains revealed that all four strains isolated from marine environments differed from the strains isolated from eels in their ability to promote D-mannitol fermentation. Two (NH 1 and NH 2) out of four isolates of biotype 2 from marine environments showed pathogenicity in eels Anguilla japonica in a challenge test. These isolates did not agglutinate with antisera against V. vulnificus NCIMB 2137 (serovar E), ATCC 27562 (non-serovar E), and ATCC 33816 (atypical serovar E).