방사선조사된 채소류 및 곡물류의 DNA Comet Assay 특성 연구

서정은(Jung-Eun Seo),오세욱(Se-Wook Oh),김윤지(Yun-Ji Kim),이남혁(Nam-Hyouck Lee),홍상필(Sang Pill Hong),김영호(Young Ho Kim) 한국식품영양과학회 2008 한국식품영양과학회지 Vol.37 No.4

국내에서 주로 소비되는 채소류와 곡물류의 방사선조사 여부를 신속하게 검지하기 위하여 DNA comet assay의 활용 가능성을 조사하였다. 식품의 종류에 따라 세포용출시간, 세포현탁액의 정치시간 및 세포용해시간 등의 DNA comet assay 조건을 달리하여야 DNA comet이 관찰되는 것으로 나타났다. 전반적으로 방사선조사선량에 따라 comet assay 값이 증가하였는데 유의적 차이는 식품의 종류에 따라 달리 나타났다. 즉, 파는 2 kGy, 마늘은 3 kGy, 토마토는 1 kGy, 쌀가루는 9 kGy, 그리고 서리태는 3 kGy에서 방사선조사 여부에 대한 검지가 가능한 것으로 나타났다. 식물세포는 동물세포에 비해 외부의 영향에 민감하게 작용하기 때문에 DNA도 쉽게 손상되어 크기뿐만 아니라 핵의 모양도 다양하게 나타나는 것으로 보고된 바와 같이 DNA comet assay를 다양한 식품의 방사선조사 신속검지법으로 활용하기 위해서는 식품의 종류에 따른 표준화된 comet 분석조건 및 통계분석법에 대한 가이드라인 설정이 필요한 것으로 나타났다. The possibility of DNA comet assay as a rapid method for screening the irradiated vegetables and grains was evaluated. Vegetables (spring onion, garlic, and tomato) irradiated at 0~3 kGy and grains (rice flour and black soybean) irradiated at 0~9 kGy were used as samples. Optimum DNA comet assay conditions, such as elution, sedimentation of suspension, and lysis time of cell, were established. The optimum conditions for vegetables were 10 min for the elution time, 0 min for the sedimentation time, and 5 min for the lysis time. The optimum conditions for grains were 15 min for the elution time, 60 min for the sedimentation time, and 30 min for the lysis time. For the food application of DNA comet assay, it was possible to screen various food samples irradiated at the following doses: spring onion at 2 kGy, garlic at 3 kGy, tomato at 1 kGy, rice flour at 9 kGy, and black soybean at 3 kGy. Each sample showed different forms and sizes in DNA comet. Therefore, further studies on various methods using comet shape, concentration, or area in DNA comet assay are necessary.

Comet assay를 이용한 방사선 조사육의 판별

정석규,박종흠,지승택,박금주,김해홍,현창기,신현길,Jeong, Seok-Kyu,Park, Jong-Heum,Ji, Seung-Taek,Park, Kum-Ju,Kim, Hai-Hong,Hyun, Chang-Kee,Shin, Heuyn-Kil 한국식품과학회 2000 한국식품과학회지 Vol.32 No.4

Comet assay를 이용하여 방사선 조사육의 조사여부 및 조사량을 판별해내는 방법을 개발하기 위해 1-10 kGy의 감마선 조사량으로 조사한 육조직에서 일어나는 DNA 손상을 측정하였다. Comet assay에 있어 최적의 comet image를 얻기 위해 세포 분리, 세포 lysis 및 전기영동에 대한 여러 조건들을 적용하여 최적의 조건을 확립하였다. DNA 손상도는 관찰되는 comet의 평균 tail length와 tail length에 의해 구분된 4 손상 등급에의 분포, 그리고 그 분포비율에 의해 본 연구에서 제시한 식에 의해 계산한 relative damage index(RDI) 값 등으로 비교 판정하였다. 평균 tail length와 RDI 값은 조사량이 증가함에 따라 증가하여 DNA 손상도가 증가됨을 나타내었으며, 평균 tail length으로는 조사량 간의 차이를 명확히 분별하기가 어려웠던 반면 RDI 값에 의하면 조사여부 및 조사량을 판별하기에 적합함을 알 수 있었다. 국내산 한우육과 수입 냉장육에 대하여 blind test를 실시한 결과 수입육이 높은 DNA 손상도를 나타내었는데 그 RDI 값은 방사선 조사에 의한 값보다는 비교적 낮은 것이어서 수입육의 DNA 손상은 방사선 조사가 아닌 저온처리의 결과인 것으로 판단되었다. 본 연구의 결과로부터 Comet assay가 우육의 방사선 조사여부 및 조사량 판별에 유용한 기술로 응용될 수 있을 것으로 판단되었다. DNA damages in post-mortem bovine muscle samples caused by gamma irradiation at doses of 1 to 10 kGy were determined by Comet assay. When the cell extract was prepared in a physical method and followed by neutral lysis and neutral electrophoresis, the optimal comet images could be obtained. DNA damages were evaluated from the mean tail length, the distributions of comet images in 4 groups divided by tail length and the relative damage index (RDI) values calculated from the distribution pattern. The mean tail length and RDI value were increased by increasing the irradiation dose, and the RDI value was found to be useful as an index for discriminating of irradiation and measuring the irradiated dose. Blind tests using Korean domestic (Hanwoo) and imported beef samples showed a higher RDI value for the latter. However, the value was lower than those of irradiated samples indicating that the cause of DNA damages in the imported beef samples might be not irradiation but low-temperature treatments. It was concluded from the results of this study that the irradiated beef and its irradiated dose could be detected and predicted by Comet assay.

Antimutagenic Effects of Ginsenoside Rb$_1$, Rg$_1$ in the CHO-K1 Cells by Benzo[a]pyrene with Chromosomal Aberration Test and Comet Assay

Kim, Jong-Kyu,Kim, Soo-Jin,Rim, Kyung-Taek,Cho, Hae-Won,Kim, Hyeon-Yeong,Yang, Jeong-Sun The Korean Society of Toxicogenomics and Toxicopro 2009 Molecular & cellular toxicology Vol.5 No.2

The usage and types of chemicals are advancing, specializing, large-scaled increasing, and new chemical exposed workers are concerning to occupational disease. The generation of reactive oxygen in the body from carcinogen, mutation and DNA damage in cancer is protected by natural antioxidants (phytochemicals) with antimutagenic effect. There were many reports of ginsenoside Rb$_1$, Rg$_1$ grievances of the genetic mutation to suppress the effect confirm the genetic toxicity test with chromosomal aberration test and the Comet (SCGE) assay confirmed the suppression effect occurring chromosomal DNA damage. We had wanted to evaluate the compatibility and sensitivity between the chromosomal aberration (CA) test and the Comet assay. We used the CA test and Comet assay to evaluate the anti-genotoxicity of ginsenoside Rb$_1$ and Rg$_1$, in CHO-K1 (Chinese hamster ovary fibroblast) cell in vitro, composed negative control (solvent), positive control (benzo[a]pyrene), test group (carcinogen+variety concentration of ginsenoside) group. The positive control was benzo[a]pyrene (50 $\mu$M), well-known carcinogen, and the negative control was the 1 % DMSO solvent. The test group was a variety concentration of ginsenoside Rb$_1$, Rg$_1$ with 10$^{-8}$%, 10$^{-6}$%, 10$^{-4}$%, 10$^{-2}$%, 1%, 10%. In chromo-somal aberration test, we measured the number of cells with abnormally structured chromosome. In Comet assay, the Olive tail moment (OTM) and Tail length (TL) values were measured. The ratio of cell proliferation was increased 8.3% in 10$^{-8}$%, 10$^{-6}$%, 10$^{-4}$%, 10$^{-2}$%, 1%, 10% Rb$_1$ treated groups, and increased 10.4% in 10$^{-10}$%, 10$^{-8}$%, 10$^{-6}$%, 10$^{-4}$%, 10$^{-2}$%, 1% Rg$_1$ treated groups. In the CA test, the number of chromosomal aberration was decreased all the Rb$_1$ and Rg$_1$ treated groups. In the Comet assay, the OTM values were decreased in all the Rb$_1$ and Rg$_1$ treated groups. To evaluate the compatibility between CA and Comet assay, we compared the reducing ratio of chromosomal abnormalities with its OTM values, it was identified the antimutagenicity of ginsenoside, but it was more sensitive the CA test than the Comet assay. Ginsenoside Rb$_1$ and Rg$_1$ significantly decrease the number of cells with chromosomal aberration, and decrease the extent of DNA migration. Therefore, ginsenoside Rb$_1$, Rg$_1$ are thought as an antioxidant phytochemicals to protect mutagenicity. The in vitro Comet assay seems to be less sensitive than the in vitro chromosomal aberration test.

유전독성 시험법 in vivo Comet Assay에 대한 국내시험기관간 검증 연구

권지영,김지영,정문구,김윤순,제정환,오상석,홍은경,오상우,김주환,염영나,손수정,서영록 대한암예방학회 2011 Journal of cancer prevention Vol.16 No.4

The comet assay can be used to investigate the genotoxicity of various agents including industrial chemicals, biocides, agrochemicals and pharmaceuticals. Nowadays, international expert groups for comet assay have published recommendations describing standards which are aimed at establishing high quality protocols in order to obtain valid and reliable data. Despite that the international activity for validation of in vivo comet assay has been carried out, the distribution of protocol and interlaboratory validation has not yet conducted in Republic of Korea. Here, three laboratories participated in interlaboratory assessment for the test validity of the in vivo comet assay under the GLP (Good Laboratory Practice)system. Two genotoxic chemicals, N-methyl-N-nitrosourea (MNU) and ethyl methansulfonate (EMS),were applied as known and unknown chemicals, respectively, which were selected on the basis of the 3rd international validation study result. Among all GLP laboratories, the results showed a significant increase in DNA damage as % of tail DNA as dose-related manner in both liver and stomach tissues treated with MNU relative to negative control group. Similarly, EMS-treated group also showed significant incremental % of tail DNA as dose-dependent manner compared with negative control group in both tissues. The in vivo comet results from all GLP laboratories in Republic of Korea were obviously consistent with the 3rd international validation study. In conclusion, we confirmed the interlaboratory validity of in vivo comet assay using two genotoxic chemicals, which was assessed by three GLP laboratories in Republic of Korea. This study can strengthen in vivo comet assay to be suggested as an international standard protocol or guideline for genotoxicity test of various genotoxic agents. (Cancer Prev Res 16, 294-301,2011)

환경 오염물질의 진보된 독성 평가 기법

류재천,최윤정,김연정,김형태,방형애,송윤선 한국환경독성학회 1999 환경독성보건학회지 Vol.14 No.1

Recently, several new methods for the detection of genetic damages in vitro and in vivo based on molecular biological techniques were introduced according to the rapid progress in toxicology combined with cellular and molecular biology. Among these methods, mouse lymphoma thymidine kanase (tk) gene forward mutation assay, single cell gel electrophoresis (comet assay) and transgenic animal and cell line model as a target gene of lac I (Big Blue) and lac Z (Muta Mouse) gene mutation are newly introduced based on molecular toxicological approaches. The mouse lymphoma tk^(+/-) gene assay (MOLY) using L5178Y tk+i- mouse lymphoma cell line is one of the mammalian forward mutation assays, and has many advantages and more sensitive than hprt assay. The target gene of MOLY is a heterozygous tk^(+/-) gene located in 11 chromosome, so it is able to detect the wide range of genetic changes like point mutation, deletion, rearrangement, and mitotic recombination within tk gene or deletion of entire chromosome 11. The comet assay is a rapid, simple, visual and sensitive technique for measuring and analysing DNA breakages in mammalian cells. Also, transgenic animal and cell line models, which have exogenous DNA incorporated into their genome, carry recoverable shuttle vector containing reporter genes to assess endogenous effects or alteration in specific genes related to disease process, are powerful tools to study the mechanism of mutation in vivo and in vitro, respectively. Also in vivo acridine orange supravital staining micronucleus assay by using mouse peripheral reticulocytes was introduced as an alternative of bone marrow micronucleus assay. In this respect, there was an International workshop on genotoxicity procedure (IWGTP) supported by OECD and EMS (Environmental Mutagen Society) at Washington D, C, in March 25-26, 1999. The objective of IWGTP is to harmonize the testing procedures internationally, and to extend to finalization of OECD guideline, and to the agreement of new guidelines under the International Conference of Harmonization (ICH) for these methods mentioned above. Therefore, we introduce and review the principle, detailed procedure, and application of MOLY, comet assay, transgenic mutagenesis assay and supravital staining micronucleus assay.

BaP 및 TBT에 노출된 넙치와 개조개의 in vivo Comet assay

김소정,정영재,이택견 한국해양과학기술원 2011 Ocean and Polar Research Vol.33 No.2

The comet assay, also called single-cell electrophoresis (SCGE) assay, is a potential sensitive monitoring tool for DNA damage in cells. The primary objective of this study was to use comet assay to ascertain if the blood cells of flounder (Pleuronichthys olivaceus) and muscle cells of clam (Saxidomus purpurata) are suitable for genotoxicity screening. This was achieved by initially exposing blood and muscle cells under in vitro conditions to the reference genotoxin hydrogen peroxide (H2O2); strong correlation between H2O2 concentration and comet values were found. Subsequently, the identification of DNA damage in isolated cells from flounder and clam was performed under in vivo exposure to benzo(a)pyrene (BaP) and tributyltin (TBT). Flounder and clam were exposed to different concentrations (1,10, 50, 100 μg/L) of BaP or TBT for 4 days. Regardless of treated chemicals, blood cells of flounder were more prone to DNA breakage compared to muscle cells of clam. In conclusion, in vivo genotoxicity of BaP and TBT can be biomonitored using the comet assay. This study suggests that flounder and clam do show potential as mediums for monitoring genotoxic damage by comet assay.

HiComet: a high-throughput comet analysis tool for large-scale DNA damage assessment

Lee, Taehoon,Lee, Sungmin,Sim, Woo Young,Jung, Yu Mi,Han, Sunmi,Won, Joong-Ho,Min, Hyeyoung,Yoon, Sungroh BioMed Central 2018 BMC bioinformatics Vol.19 No.-

<P><B>Background</B></P><P>DNA damage causes aging, cancer, and other serious diseases. The comet assay can detect multiple types of DNA lesions with high sensitivity, and it has been widely applied. Although comet assay platforms have improved the limited throughput and reproducibility of traditional assays in recent times, analyzing large quantities of comet data often requires a tremendous human effort. To overcome this challenge, we proposed HiComet, a computational tool that can rapidly recognize and characterize a large number of comets, using little user intervention.</P><P><B>Results</B></P><P>We tested HiComet with real data from 35 high-throughput comet assay experiments, with over 700 comets in total. The proposed method provided unprecedented levels of performance as an automated comet recognition tool in terms of robustness (measured by precision and recall) and throughput.</P><P><B>Conclusions</B></P><P>HiComet is an automated tool for high-throughput comet-assay analysis and could significantly facilitate characterization of individual comets by accelerating its most rate-limiting step. An online implementation of HiComet is freely available at https://github.com/taehoonlee/HiComet/.</P>

암 예방 연구에서 Comet Assay를 이용한 DNA Repair 분석법의 활용

이현정,박은주 대한암예방학회 2011 Journal of cancer prevention Vol.16 No.1

DNA repair plays important roles in maintaining a low steady state level of DNA damage and protecting us from genetic mutation and cancer development. The comet assay, a fast, simple, and sensitive technique for the analysis of DNA damage and repair on cells, has applications in testing novel chemicals for genotoxicity, monitoring environmental contamination with genotoxins, and population monitoring. Alkaline comet assay is a method used to measure single strand breaks and alkali-site. The sensitivity and specificity of the comet assay are greatly enhanced if the nucleoids are incubated with lesion-specific enzymes that recognize specific lesion in the DNA. In addition, the repair activity in a cell extract can be measured by incubating it with nucleoids containing specific damage. The comet assay can be modified to measure DNA incision activity reflecting base excision repair and nucleotide excision repair. Currently,only a few studies have investigated the influence of nutritional factor diseases such as cancer, metabolic disease on DNA repair. In this review we addressed the application of comet assay to detect DNA repair capacity, focusing on the methodology and recent research trends. (Cancer Prev Res 16, 1-12, 2011)

Genotoxicity on Structural Derivatives of Sophoricoside, a Component of Sophora Japonica, in Bacterial and Mammalian Cells

Ryu, Jae-Chun,Kim, Youn-Jung,Kim, Mi-Soon,Kim, Min-Ji,Sarma, Sailendra Nath,Jung, Sang-Hun The Korean Society of Toxicogenomics and Toxicopro 2005 Molecular & cellular toxicology Vol.1 No.3

To develop the novel anti-allergic drug, many sophoricoside derivatives were synthesized. Among these derivatives, JSH-II-3, VI-3, VII-3, VIII-3, VII-20 and VII-20 (sodium salt) were selected and subjected to high throughput toxicity screening (HTTS) because they revealed strong IL-5 inhibitory activity and limitation of quantity. Single cell gel electrophoresis (Comet) assay, mouse lymphoma thymidine kinase ($tk^{+/-}$) gene assay (MOLY), chromosomal aberration assay in mammalian cells and Ames reverse mutation assay in bacterial system were used as simplified, inexpensive, short-term in vitro screening tests in our laboratory. Through the primary screening using the comet assay, we could choose the first candidates of sophoricoside derivatives with no genotoxic potentials as JSH-VI-3, VII-3, VII-20 and VII-20 (sodium salt). Also JSH-VII-3, VII-20 and VII-20 (sodium salt) are non-mutagenic in MOLY assay, while JSH-II-3 is mutagenic at high concentration with the presence of metabolic activation system in both comet assay and MOLY assay. The selected derivatives (JSH-VI-3, VII-3, VII-20 and VII-20 (sodium salt) are not mutagenic in S. typhimurium TA98 and TA100 strains both in the presence and absence of metabolic activation. From results of chromosomal aberration assay, 6 h treatment of JSH-VI-3, VII-3 and VII-20 (sodium salt) were not revealed clastogenicity both in the presence and absence of S-9 mixture. Therefore, we suggests that JSH-VI-3, VII-3, VII-20 and VII-20 (sodium salt), as the optimal candidates with both no genotoxic potential and IL-5 inhibitory effects must be chosen. To process the development into new anti-inflammatory drug of these derivatives, further investigation will need.

Comet assay slides 에서 나타난 apoptosis 평가에서 함수 및 탈수 겔의 비교

최민철,수즌엠러루,에드워드엘질럿 한국임상수의학회 1996 한국임상수의학회지 Vol.13 No.2

Comet assay 는 포유류 세포에서 DNA의 파괴를 측정하는데 있어 신속하고 단순하며 시각적이고 민감한 방법이다. Apoptosis에서는 세포핵의 광범위한 DNA의 붕괴가 일어나므로 comet assay는 종양세포에서 apoptosis가 발생되었는가를 알아내는데 유용하다. 본 연구는 apoptosis 연구의 결과가 변화되지 않도록 comet assay slides를 좀 더 오래 보관할 수 있는 방법을 개발하고자 시행되었다. 개의 종양세포를 가지고 alkali comet assay를 끝낸 뒤 slides를 진공 건조기에서 꺼내서 증류수로 점적하여 10-20분간 침수시키고 현광현미경하에서 육안적으로 관찰하였다. 건조후 3-4일, 1주, 2주, 3주, 4주 및 7주의 slides에서 apoptosis 회복율(%)은 각각 98.1, 98.3, 99.4, 80.8 및 35.2%이었다. 3주 이내의 slides에서 대조군과 비교하여 apoptosis 회복율에서 차이가 없었으나 4주 이상의 slides를 건조후 침수시키는 방법을 이용하였을 때 apoptosis 평가에서 건조 후 3주간까지는 처음의 결과와 차이가 없으며, 이 방법을 이용하여 comet slide의 좀 더 긴 기간이 보관과 보관후의 재평가에서 이용될 수 있는 좋은 방법이 된다.