Research on an Improved Multi-Population Ant Colony Optimization Algorithm and its Application

Ning Wei,Chunfeng Si 보안공학연구지원센터 2016 International Journal of Database Theory and Appli Vol.9 No.10

In allusion to the shortcomings of easy falling into the local optimization and difficult obtaining Pareto optimal solutions for the original ant colony optimization algorithm in solving the complex optimization problems, multi-population, parallel mechanism, dynamic evaporation strategy and chaos theory are introduced into the original ant colony optimization algorithm in order to propose an improved multi-population ant colony optimization(MPPDCACO) algorithm in this paper. In the proposed MPPDCACO algorithm, the ant colony is divided into scout ants, search ants and worker ants in order to make the ACO algorithm as far as possible to avoid falling into local optimization and improve the local search ability of ant colony. The multi-population parallel mechanism is used to exchange the information and improve the computational effectiveness. The dynamic evaporation strategy is used to dynamically adjust the evaporation coefficient of pheromone in order to improve the global search capability of the ACO algorithm. The chaos theory is used to realize the optimization search in order to obtain the pheromone distributing in choosing path process. So the proposed MPPDCACO algorithm can prevent the local convergence caused by the misbalance of pheromone and can improve the searching ability. In order to test the optimization performance of the proposed MPPDCACO algorithm, 6 traveling salesman problems are selected from the TSPLIB in here. The experimental results show that the proposed MPPACACO algorithm takes on better global searching ability and higher convergence speed.

Network Analysis of microRNAs, Genes and their Regulation in Mantle Cell Lymphoma

Deng, Si-Yu,Guo, Xiao-Xin,Wang, Ning,Wang, Kun-Hao,Wang, Shang Asian Pacific Journal of Cancer Prevention 2015 Asian Pacific journal of cancer prevention Vol.16 No.2

The pathogenesis of mantle cell lymphoma, a special subtype of lymphoma that is invasive and indolent and has a median survival of 3 to 4 years, is still partially unexplained. Much research about genes and miRNAs has been conducted in recent years, but interactions and regulatory relations of genetic elements which may play a vital role in genesis of MCL have attracted only limited attention. The present study concentrated on regulatory relations about genes and miRNAs contributing to MCL pathogenesis. Numerous experimentally validated raw data were organized into three topology networks, comprising differentially expressed, associated and global examples. Comparison of similarities and dissimilarities of the three regulating networks, paired with the analysis of the interactions between pairs of elements in every network, revealed that the differentially expressed network illuminated the carcinogenicity mechanism of MCL and the related network further described the regulatory relations involved, including prevention, diagnosis, development and therapy. Three kinds of regulatory relations for host genes including miRNAs, miRNAs targeting genes and genes regulating miRNAs were concluded macroscopically. Regulation of the differentially expressed miRNAs was also analyzed, in terms of abnormal gene expression affecting the MCL pathogenesis. Special regulatory relations were uncovered. For example, auto-regulatory loops were found in the three topology networks, key pathways of the nodes being highlighted. The present study focused on a novel point of view revealing important influencing factors for MCL pathogenesis.

Temperature Response to Tensile Characteristics of the Hot Asphalt Mixtures

Wei Si,Ning Li,Biao Ma,Yu-xiang Tian,Xue-yan Zhou 대한토목학회 2016 KSCE JOURNAL OF CIVIL ENGINEERING Vol.20 No.4

Asphalt concrete is one type of the temperature sensitive mixtures, which is the most and broadest used pavement material in the world. Asphalt pavement suffers from the impact of temperature due to the temperature variation in different districts and environments. Facing temperature sensitivity, this paper uses Indirect Tensile Test (IDT) to analyze the tensile characters of asphalt mixture under different temperatures (-20°C, -10°C, 0°C, 15°C, 20°C, 45°C, and 60°C). The influence factors of temperature, loading rate, asphalt content, asphalt types, and mixtures gradation are evaluated. Piecewise linear model, logarithm linear model and S-logistic nonlinear model are applied to simulate the variation of flexural tensile characters with temperature change. Results show that temperature has significant influence on flexural tensile properties. Loading rates also has obvious influence on flexural tensile characteristics. With temperature changes, asphalt types have evident influence on mixture’s tensile characteristics, SBR modified asphalt has better performance at the lower temperature environment. Mixtures’ gradation has important effect on tensile strength and tensile strain as well, while due the similarity between two gradations, it is hard to precisely recommend which one is better. Asphalt content has evident influence on mixtures properties at the same temperature condition. Research results provide suggestions and applications for construction and performance of asphalt pavement. The results also indicate that IDT would be a practical option to evaluate the properties of asphalt mixture in all temperature ranges.

Enhanced drought and salinity tolerance in transgenic potato plants with a BADH gene from spinach

Zhang, Ning,Si, Huai-Jun,Wen, Gang,Du, Hong-Hui,Liu, Bai-Lin,Wang, Di The Korean Society of Plant Biotechnology 2011 Plant biotechnology reports Vol.5 No.1

Drought and salinity are the most important abiotic stresses that affect the normal growth and development of plants. Glycine betaine is one of the most important osmolytes present in higher plants that enable them to cope with environmental stresses through osmotic adjustment. In this study, a betaine aldehyde dehydrogenase (BADH) gene from spinach under the control of the stress-induced promoter rd29A from Arabidopsis thaliana was introduced into potato cultivar Gannongshu 2 by the Agrobacterium tumefaciens system. Putative transgenic plants were confirmed by Southern blot analysis. Northern hybridization analysis demonstrated that expression of BADH gene was induced by drought and NaCl stress in the transgenic potato plants. The BADH activity in the transgenic potato plants was between 10.8 and 11.7 U. There was a negative relationship (y = -2.2083x + 43.329, r = 0.9495) between BADH activity and the relative electrical conductivity of the transgenic potato plant leaves. Plant height increased by 0.4-0.9 cm and fresh weight per plant increased by 17-29% for the transgenic potato plants under NaCl and polyethylene glycol stresses compared with the control potato plants. These results indicated that the ability of transgenic plants to tolerate drought and salt was increased when their BADH activity was increased.

Identification of a novel circularized transcript of the AML1 gene

Ai Ning Xu,Xiu Hua Chen,Yan Hong Tan,Xi Ling Qi,Zhi Fang Xu,Lin Lin Zhang,Fang Gang Ren,Si Cheng Bian,Yi Chen,Hong Wei Wang 생화학분자생물학회(구 한국생화학분자생물학회) 2013 BMB Reports Vol.46 No.3

Genetic Diversity of Toxoplasma gondii Strains from Different Hosts and Geographical Regions by Sequence Analysis of GRA20 Gene

Hong-Rui Ning,Si-Yang Huang,Jin-Lei Wang,Qian-Ming Xu,Xing-Quan Zhu 대한기생충학열대의학회 2015 The Korean Journal of Parasitology Vol.53 No.3

Toxoplasma gondii is a eukaryotic parasite of the phylum Apicomplexa, which infects all warm-blood animals, including humans. In the present study, we examined sequence variation in dense granule 20 (GRA20) genes among T. gondii isolates collected from different hosts and geographical regions worldwide. The complete GRA20 genes were amplified from 16 T. gondii isolates using PCR, sequence were analyzed, and phylogenetic reconstruction was analyzed by maximum parsimony (MP) and maximum likelihood (ML) methods. The results showed that the complete GRA20 gene sequence was 1,586 bp in length among all the isolates used in this study, and the sequence variations in nucleotides were 0-7.9% among all strains. However, removing the type III strains (CTG, VEG), the sequence variations became very low, only 0-0.7%. These results indicated that the GRA20 sequence in type III was more divergence. Phylogenetic analysis of GRA20 sequences using MP and ML methods can differentiate 2 major clonal lineage types (type I and type III) into their respective clusters, indicating the GRA20 gene may represent a novel genetic marker for intraspecific phylogenetic analyses of T. gondii.

Constructing ZnCo2O4@CTP microspheres as a high-energy lithium storage material

Yu-Rui Ji,Si-Yu Qi,Jian-Cang Wang,Pengfei Wang,Ning Ren,Ting-Feng Yi 한국공업화학회 2023 Journal of Industrial and Engineering Chemistry Vol.120 No.-

Transition metal oxides are deemed as a promising substitute for graphite anode materials of Li-ion batteries(LIBs) on account of their large specific capacity. Nonetheless, the large volume change in the processof charging and discharging leads to low capacity retention. Herein, a well-designed ZnCo2O4@coaltar pitch based porous carbon (ZCO-CTP) microsphere is prepared to construct the high-performanceanode of LIBs. The coating modification of CTP significantly reduces the polarization and charge transferresistance and improves the migration ability of ions and electrons, thus achieving a superior reversiblecapacity and cycling stability of ZCO-CTP anode. The battery with obtained ZCO-CTP5 provides a largecharge capacity of 406.17 mAh/g at 1000 mA g1 compared with pristine ZCO (only 157.78 mAh/g). Even after 1000 cycles at 1000 mA g1, the battery can achieve a charge/discharge capacity of598.46/601.17 mAh/g. We believe that the application of CTP will provide a new perspective for theexploitation of high-performance anode materials for LIBs.

The Relative Centrifugation Force Permits Visualization of the Germinal Vesicle in Pig Oocytes

Hsieh, Chang-Hsing,Lee, Stone,Jaw, Si-Ning,Tseng, Jung-Kai,Tang, Pin-Chi,Chang, Lan-Hwa,Ju, Jyh-Cherng Asian Australasian Association of Animal Productio 2004 Animal Bioscience Vol.17 No.9

Pig oocytes contain high levels of lipids in the ooplasm, which reduces the visibility of the germinal vesicle (GV) under microscopic examination. Therefore, the purposes of this study were to investigate the effects of relative centrifugation force (RCF) on the visibility and maturation rates of the GV stage oocytes after centrifugation. In Experiment 1, cumulus-oocyte-complexes (COCs) were collected from slaughterhouse ovaries and randomly allocated to different RCFs (3,000 rpm: 970 g; 6,000 rpm: 3,900 g; or 10,000 rpm: 10,840 g) for 10 or 20 min. Percentages of visible GV were 76-79% in the oocytes centrifuged with 10,000 rpm, which were significantly higher (p<0.01) than those with 3,000 and 6,000 rpm. No significant differences in GV visibility were observed among oocytes with different lengths of centrifugation (p<0.05) regardless of the RCFs. In esperiment 2, the maturation rate of the oocyte was found significantly lower in the 20 min than in the 10 min group received 10,840 g of RCF (30 vs. 75%, p<0.05). In conclusion, the GV of porcine oocytes can be clearly visible by centrifugation at 10,840 g for 10 min without compromising their subsequent maturation rates and a longer centrifugation time (20 min) had no beneficial influence on the visibility of GV stage pig oocytes.

Improved development of somatic cell cloned bovine embryos by a mammary gland epithelia cells in vitro model

XiaoYing He,LiBing Ma,Xiao-ning He,Wan-tong Si,Yue-Mao Zheng 대한수의학회 2016 Journal of Veterinary Science Vol.17 No.2

Previous studies have established a bovine mammary gland epithelia cells in vitro model by the adenovirus-mediated telomerase (hTERT-bMGEs). The present study was conducted to confirm whether hTERT-bMGEs were effective target cells to improve the efficiency of transgenic expression and somatic cell nuclear transfer (SCNT). To accomplish this, a mammary-specific vector encoding human lysozyme and green fluorescent protein was used to verify the transgenic efficiency of hTERT-bMGEs, and untreated bovine mammary gland epithelial cells (bMGEs) were used as a control group. The results showed that the hTERT-bMGEs group had much higher transgenic efficiency and protein expression than the bMGEs group. Furthermore, the nontransgenic and transgenic hTERT-bMGEs were used as donor cells to evaluate the efficiency of SCNT. There were no significant differences in rates of cleavage or blastocysts or hatched blastocysts of cloned embryos from nontransgenic hTERT-bMGEs at passage 18 and 28 groups (82.8% vs. 81.9%, 28.6% vs. 24.8%, 58.6% vs. 55.3%, respectively) and the transgenic group (80.8%, 26.5% and 53.4%); however, they were significantly higher than the bMGEs group (71.2%, 12.8% and 14.8%), (p < 0.05). We confirmed that hTERT-bMGEs could serve as effective target cells for improving development of somatic cell cloned cattle embryos.

Posterior Apophyseal Ring Fracture in Adult Lumbar Disc Herniation: An 8-Year Experience in Minimally Invasive Surgical Management of 48 Cases

Shuo Yuan,Qichao Wu,Lei Zang,Ning Fan,Peng Du,Aobo Wang,Tianyi Wang,Fangda Si,Jian Li,Xiaochuan Kong 대한척추신경외과학회 2022 Neurospine Vol.19 No.3

Objective: Posterior apophyseal ring fracture (PARF) is an uncommon disorder that is usually accompanied by lumbar disc herniation (LDH). The aim of this study to describe the 8-year experience of performing minimally invasive treatment of PARF, giving particular attention to surgical technique and clinical outcome. Methods: We reviewed 1,324 consecutive patients with LDH seen in our department between 2013 and 2020. Forty-eight patients (3.63%) were enrolled who were diagnosed with PARF associated with LDH and underwent transforminal endoscopic lumbar discectomy (TELD). Mean duration of the final postoperative follow-up was 5.1 years. The control group was comprised of 50 patients diagnosed with LDH without PARF at the same facility. Data on clinical outcomes were analyzed. Results: The mean operation time in the PARF group was 105.4 minutes, which was longer than the mean operation time of the control group (83.9 minutes) (p = 0.001). Surgical complications, including dural tears (6.3%) and surgical instrument rupture (4.2%) were more common in the PARF group (p = 0.025). However, there was no significant difference in the proportion of excellent and good results and recurrence rates between the LDH patients with and those without PARF, respectively. Conclusion: TELD is a safe and effective minimally invasive approach for the treatment of PARF. However, minimally invasive techniques may require longer operation time and steeper learning curve for inexperienced surgeons. The separation and removal of bone fragments, a key step in the procedure, requires patience and care to prevent rupture, residual surgical instruments, and leakage of cerebrospinal fluid.