Mitochondrial genome and diverse inheritance patterns in Pleurotus pulmonarius

Li-Yun Ye,You-Jin Deng,Irum Mukhtar,Guo-Liang Meng,Yan-Jiao Song,Bing Cheng,Jin-bing Hao,Xiao-Ping Wu 한국미생물학회 2020 The journal of microbiology Vol.58 No.2

Pleurotus pulmonarius, a member of the Pleurotaceae family in Basidiomycota, is an edible, economically important mushroom in most Asian countries. In this study, the complete mitochondrial genomes (mtDNA) of three P. pulmonarius strains – two monokaryotic commercial (J1-13 and ZA3) and one wild (X1-15) – were sequenced and analyzed. In ZA3 and X1-15, the mtDNA molecule was found to be a single circle of 68,305 bp and 73,435 bp, respectively. Both strains contain 14 core protein-coding genes and two ribosomal RNA (rRNA) subunit genes. The ZA3 strain has 22 transfer RNA (tRNA) genes and nine introns: eight in cytochrome c oxidase subunit 1 (cox1), and one in the rRNA large subunit (rnl). Monokaryotic J1-13 and ZA3 mtDNAs were found to be similar in their structure. However, the wild strain X1-15 contains 25 tRNA genes and only seven introns in cox1. Open reading frames (ORFs) of ZA3/J1-13 and X1-15 encode LAGLIDADG, ribosomal protein S3, and DNA polymerase II. In addition, mtDNA inheritance in J1-13, ZA3, and X1-15 was also studied. Results showed that the mtDNA inheritance pattern was uniparental and closely related to dikaryotic hyphal location with respect to the parent. Results also show that mtDNA inheritance is influenced by both the parental nuclear genome and mitogenome in the zone of contact between two compatible parents. In summary, this analysis provides valuable information and a basis for further studies to improve our understanding of the inheritance of fungal mtDNA.

Genome-wide analysis of chemosensory protein genes in the small white butterfly Pieris rapae (Lepidoptera: Pieridae)

Mao-Ye Li,Xiu-Yun Jiang,Xi-Ya Liu,Yuan-Jie Huang,Shi-Guang Li,Su Liu 한국응용곤충학회 2020 Journal of Asia-Pacific Entomology Vol.23 No.3

Chemosensory proteins (CSPs) play a crucial role in olfactory recognition in insects. The small white butterfly Pieris rapae—a major pest of Brassicaceae vegetables, which causes enormous economic losses—uses olfaction to locate its host plants. However, the molecular mechanism of olfaction in this species remains unknown. Herein, we performed a genome-wide and transcriptome-wide analysis of CSP genes in P. rapae and identified 21 CSPs (PrapCSP1 to PrapCSP21). Proteins encoded by these genes showed typical characteristics of CSPs—an Nterminal signal peptide and four positionally conserved cysteine residues. BLASTX analysis indicated that most P. rapae CSPs showed high amino acid identity with their respective orthologs in other lepidopterans. Phylogenetic analysis showed that most P. rapae CSPs were well segregated and were clustered into different branches. The 21 genes were located on six genomic scaffolds, and most genes were tandemly arrayed. Quantitative reverse transcription-PCR showed that PrapCSP3, 4, 16 and 21 had the highest expression level in the antennae; PrapCSP7 and PrapCSP18 were mainly expressed in the ovaries, and PrapCSP9 and PrapCSP17 were leg-enriched. PrapCSP11 and PrapCSP20 were found mainly in the heads and testes, respectively. Our findings provide a solid foundation for studying the function of these genes.

Room temperature pH-dependent ammonia gas sensors using graphene quantum dots

Chen, Wei,Li, Fushan,Ooi, Poh Choon,Ye, Yun,Kim, Tae Whan,Guo, Tailiang Elsevier 2016 Sensors and actuators. B, Chemical Vol.222 No.-

<P><B>Abstract</B></P> <P>We report a simple solution-process route to realize ammonia (NH<SUB>3</SUB>) gas sensor based on graphene quantum dots (GQDs). Transmission electron microscopy analysis confirmed that the 8–10nm GQDs were formed from multi-walled carbon nanotubes by using ultrasonication treatment. The as-fabricated gas sensor showed promising selectivity response when expose to NH<SUB>3</SUB> ambient at room temperature. It is indicated that by adjusting the pH value of the aqueous GQDs in acidic and neutral, two types of gas sensors with contrary current responses could be obtained, which might be resulted from quantum confinement, edge effects and presence of functional groups on GQDs.</P> <P><B>Highlights</B></P> <P> <UL> <LI> We report an NH<SUB>3</SUB> gas sensor at room temperature based on graphene quantum dots. </LI> <LI> GQDs were formed from multi-walled carbon nanotubes by ultrasonication treatment. </LI> <LI> Adjusting the pH value of the GQDs can lead to gas sensors with different behavior. </LI> <LI> Sensing mechanism might be resulted from the unique properties of GQDs. </LI> </UL> </P>

Anomalous Propagation Characteristics of an Airy Beam in Nonlocal Nonlinear Medium

Yun-Long Wu,Qin Ye,Li Shao 한국광학회 2021 Current Optics and Photonics Vol.5 No.2

The anomalous propagation characteristics of a single Airy beam in nonlocal nonlinear medium are investigated by utilizing the split-step Fourier-transform method. We show that besides the normal straight propagation trajectory, the breathing solitons formed by the interaction between Airy beam and nonlocal nonlinear medium can propagate along the sinusoidal trajectory, and the anomalous trajectory can be modulated arbitrarily by altering the initial amplitude and the nonlocal nonlinear coefficient. In addition, the initial amplitude and the nonlocal nonlinear coefficient can have inverse impacts on the formation and transformation of the equilibrium state of spatial solitons, when the two parameters are larger than certain values. Therefore, the reversible transformation of the evolution dynamics of two soliton states can be realized by adjusting those two parameters properly. Finally, it is shown that the propagation properties of the solitons formed by the interaction between Airy beam and nonlocal nonlinear medium can be controlled arbitrarily, by adjusting the distribution factor and nonlocal coefficient.

Two New Diphenylethylenes from Arundina graminifolia and Their Cytotoxicity

Li, Yin-Ke,Zhou, Bin,Ye, Yan-Qing,Du, Gang,Niu, De-Yun,Meng, Chun-Yang,Gao, Xue-Mei,Hu, Qiu-Fen Korean Chemical Society 2013 Bulletin of the Korean Chemical Society Vol.34 No.11

Two new diphenylethylenes, gramniphenols H and I (1 and 2), together with six known diphenylethylenes (3-8), were isolated from Arundina graminifolia. The structures of 1-8 were elucidated by spectroscopic methods including extensive 1D- and 2D-NMR techniques. Compounds 1 and 2 were evaluated for their cytotoxicity against five human tumor cell lines. Compound 1 showed cytotoxicity against PC3 cells with $IC_{50}$ value of 3.5 ${\mu}M$. Compound 2 showed cytotoxicity against NB4 and PC3 cells with $IC_{50}$ values of 3.6 and 3.8 ${\mu}M$, respectively.

Stanniocalcin-1 protects bovine intestinal epithelial cells from oxidative stress-induced damage

Li-ming Wu,Rui Guo,Lin Hui,Yong-gang Ye,Jing-mei Xiang,Chun-yun Wan,Miao Zou,Rui Ma,Xiao-zhuan Sun,Shi-jin Yang,Ding-zong Guo 대한수의학회 2014 JOURNAL OF VETERINARY SCIENCE Vol.15 No.4

Chronic enteritis can produce an excess of reactive oxygenspecies resulting in cellular damage. Stanniocalcin-1(STC-1)reportedly possesses anti-oxidative activity, the aim of thisstudy was to define more clearly the direct contribution ofSTC-1 to anti-oxidative stress in cattle. In this study, primaryintestinal epithelial cells (IECs) were exposed to hydrogenperoxide (H2O2) for different time intervals to mimic chronicenteritis-induced cellular damage. Prior to treatment with 200μM H2O2, the cells were transfected with a recombinantplasmid for 48 h to over-express STC-1. Acridine orange/ethidium bromide (AO/EB) double staining and trypan blueexclusion assays were then performed to measure cell viabilityand apoptosis of the cells, respectively. The expression of STC-1and apoptosis-related proteins in the cells was monitored byreal-time PCR and Western blotting. The results indicated thatboth STC-1 mRNA and protein expression levels positivelycorrelated with the duration of H2O2 treatment. H2O2 damagedthe bovine IECs in a time-dependent manner, and this effectwas attenuated by STC-1 over-expression. Furthermore, overexpressionof STC-1 up-regulated Bcl-2 protein expression andslightly down-regulated caspase-3 production in the damagedcells. Findings from this study suggested that STC-1 plays aprotective role in intestinal cells through an antioxidant mechanism.

The Study of Maximum Power Point Tracking Control for DFIG based on PSCAD

Li, Dongdong,Wang, Lu,Wang, Yun,Wang, Kaikai,Ye, Chensheng The Korean Institute of Electrical Engineers 2012 The Journal of International Council on Electrical Vol.2 No.3

In recent years, wind power has been developed rapidly. Doubly fed induction generator becomes the main model of wind power become the mainstream due to its high wind energy utilization efficiency and reactive power controllability. On the basis of analyzing the principle and mathematical model of DFIG, dual-loop control system based on the stator flux oriented vector control of DFIG was established, and active and reactive power decoupling control is realized. This paper shows speed control model and power control model which are control modes of the maximum wind power point tracking (MPPT). Simulation results show the control system has good performance and power control mode is more practical and stable than speed control mode.

Coptis chinensis Polysaccharides Inhibit Advanced Glycation End Product Formation

Ye Yang,Yun Li,Dengke Yin,Song Chen,Xiangdong Gao 한국식품영양과학회 2016 Journal of medicinal food Vol.19 No.6

Coptis chinensis Franch (Huanglian) is commonly used to treat diabetes in China. In this study, the effects of the C. chinensis Franch polysaccharides (CCP) on advanced glycation end product (AGE) formation in vitro and in streptozotocin-induced diabetic mice were investigated. CCP significantly inhibited all the three periods of nonenzymatic protein glycation in vitro, including Amadori product, dicarbonyl compound, and AGE formation (P < .01). In diabetic mice, the administration of CCP not only improved both bodyweight and serum insulin and decreased fasting blood glucose and glycated serum protein concentrations but also decreased the AGE accumulations and morphological abnormalities in pancreas and liver. The inhibitory effects of CCP on AGE formation afford a potential therapeutic use in the prevention and treatment of diabetes.

Synergistic efficacy of LBH and αB-crystallin through inhibiting transcriptional activities of p53 and p21

( Yun Deng ),( Yong Qing Li ),( Xiong Wei Fan ),( Wu Zhou Yuan ),( Hua Ping Xie ),( Xiao Yang Mo ),( Yan Yan ),( Jun Mei Zhou ),( Yue Qun Wang ),( Xian Li Ye ),( Yong Qi Wan ),( Xiu Shan Wu ) 생화학분자생물학회 (구 한국생화학분자생물학회) 2010 BMB Reports Vol.43 No.6

LBH is a transcription factor as a candidate gene for CHD associated with partial trisomy 2p syndrome. To identify potential LBH-interacting partners, a yeast two-hybrid screen using LBH as a bait was performed with a human heart cDNA library. One of the clones identified encodes αB-crystallin. Co-immunoprecipitation and GST pull-down assays showed that LBH interacts with αB-crystallin, which is further confirmed by mammalian two-hybrid assays. Co-localization analysis showed that in COS-7 cells, αB-crystallin that is cytoplasmic alone, accumulates partialy in the nucleus when co-transfected with LBH. Transient transfection assays indicated that overexpression of LBH or αB-crystallin reduced the transcriptional activities of p53 and p21, respectively, Overexpression of both αB-crystallin and LBH together resulted in a stronger repression of the transcriptional activities of p21 and p53. These results showed that the interaction of LBH and αB-crystallin may inhibit synergistically the transcriptional regulation of p53 and p21. [BMB reports 2010; 43(6): 432-437]

Association between RASSF1A Promoter Hypermethylation and Oncogenic HPV Infection Status in Invasive Cervical Cancer: a Meta-analysis

Li, Jin-Yun,Huang, Tao,Zhang, Cheng,Jiang, Dan-Jie,Hong, Qing-Xiao,Ji, Hui-Hui,Ye, Meng,Duan, Shi-Wei Asian Pacific Journal of Cancer Prevention 2015 Asian Pacific journal of cancer prevention Vol.16 No.14

Cervical carcinoma is the main cause of cancer-related mortality in women and is correlated with more than 15 risk cofactors, including infection of cervical cells with high-risk types of HPV (hrHPV). Indeed, both aberrant methylation of the RASSF1A promoter and hrHPV infection are often observed in cervical carcinomas. The purpose of our meta-analysis was to evaluate the role of RASSF1A promoter methylation and hrHPV infection in cervical cancer. Our meta-analysis involved 895 cervical cancer patients and 454 control patients from 15 studies. Our results suggested that RASSF1A promoter hypermethylation increased the risk of cervical cancer (OR=9.77, 95%CI=[3.06, 31.26], P=0.0001, $I^2=78%$). By grouping cases according to cancer subtypes, we found that HPV infection was higher in cervical squamous cell carcinomas (SCCs) than in cervical adenocarcinomas/adenosquamous cancers (ACs/ASCs) (OR=4.00, 95%CI=[1.41, 11.30], P=0.009, $I^2=55%$). Interestingly, HPV infection tended to occur in cervical cancers with relatively low levels of RASSF1A promoter methylation (OR=0.59, 95%CI=[0.36, 0.99], P=0.05, I2=0%). Our study provides evidence of a possible interaction between HPV infection and RASSF1A promoter methylation in the development of cervical cancers.