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A quantitative shotgun proteomic study of rice grain development
Wondo Lee,Jaebok Cho,Hijin Kim,Joohyun Lee 한국육종학회 2012 한국육종학회 심포지엄 Vol.2012 No.07
Although a great deal of rice proteomic research has been conducted, there are relatively few studies specifically addressing the rice grain proteome. The existing rice grain proteomic research has focused on the identification of deferentially expressed proteins. Here, we performed comparative shotgun proteomic analysis of rice grain development to construct an in-depth proteome reference map, to reveal the expression patterns of the identified proteins, and to detect proteins that are expressed deferentially during grain development. A Korean rice variety, Ilpumbyeo was used. Proteins were extracted from rice grains 10, 20, and 30 days after flowering, as well as from mature grains. The protein expression patterns were revealed by a quantitative shotgun proteoemic analysis. By merging all of the identified proteins in this study, we identified 4,172 non-redundant. A Genome Ontology category enrichment analysis for the 4,172 proteins revealed that 52 categories were enriched, including the carbohydrate metabolic process, transport, localization, lipid metabolic process, and secondary metabolic process. The relative abundances of the 1,784 reproducibly identified proteins were compared to detect 484 differentially expressed proteins during rice grain development. Clustering analysis and Genome Ontology category enrichment analysis revealed that proteins involved in the metabolic process were enriched through all stages of development, suggesting that proteome changes occurred even in the desiccation phase. Interestingly, enrichments of proteins involved in protein folding were detected in the desiccation phase and in fully mature grain.
Hijin Kim,Jaebok Cho,Wondo Lee,Joohyun Lee 한국육종학회 2013 한국육종학회 심포지엄 Vol.2013 No.07
As the drought is getting worse, Lot of studies related to drought stress in plant have been conducted. Recently whole genome sequencing of Brassica rapa ssp which is important vegetable crop to East Asians has been completed to enable Omic research. It is known that the drought damages occur in the early stage of plant development. Here, we performed shotgun proteomics analysis of B. rapa to observe the morphological characters, monitor the expression patterns of the identified proteins during drought stress, and detect the proteins related to drought stress. The three week old B. rapa grown in density of single plant in a single pot were used. Drought stress were treated as that a single plant in soil was removed from the pot and the plant with soil was exposed to air and light without watering. Leaves were immediately harvested before drought treatment, 24hr after drought treatment, and 48hr after drought treatment. The protein expression patterns were monitored by a quantitative shotgun proteomics analysis. Extracted proteins were separated in 1D-SDS-PAGE then the gel sliced into seven pieces. Chopped gels were ingel-digested. Peptides were assigned to mass spectrometry (Q-Exactive). The ms/ms spectra were analyzed through Proteome Discoverer. By combining all of the identified proteins in the seven sliced gel samples, total B. rapa proteome reference map was completed. Protein expression patterns were investigated by comparing the quantity of protein. With shotgun proteomic approach, we evaluated the changes in the quantity and finally discovered the candidate proteins related with drought stress.
엄흥식,김준재,김현수,박영정,최상봉,박원도,김상현 인제대학교 2006 仁濟醫學 Vol.27 No.-
Spinal epidural abscess is an uncommon but readily diagnosable and treatable potential cause of paralysis and death. The incidence of spinal epidural abscess is approximately one to two cases per 10,000 hospital admissions in the United States. The symptoms of spinal epidural abscess are varied but include lower back pain, fever, local tenderness and neurological deficit, especially in such high risk groups as patients with diabetes, intravenous drug abuse, chronic renal failure, alcoholism, liver disease and immunocompromization. Infections of the epidural space originate from contiguous spread or via hematogenous routes from a distant source. Cutaneous sites of infection are the most common remote sources, especially in intravenous drug users. S. aureus accounts for most spinal epidural abscess infections, followed by streptococci and gram-negative anaerobes. We here report a case of spinal epidural abscess in renal abscess patient complaining of fever and back pain. A 71-year old female patient was admitted to epigastric pain and oliguria. She had been diagnosed as acute renal failure and treated with hydration. After third hospital days, she shows a persistent fever and drowsy mentality. Abdominal computed tomography demonstrated renal abscess. She was treated with intravenous antibiotics, third cephalosporin. Blood cultures and urinary culture revealed Escherichia, coli. After fourteenth hospital days, she developed back pain, muscle weakness and decreased sensation of lower extremities. Spine MRI demonstrated spinal epidural abscess with spinal cord compression. Surgical drainage with laminectomy was performed. After treatment of intravenous antibiotics and surgical drainage, she discharged with improved back pain and neurological symptom.
Yongkeun Oh,Dae-Sung Kwon,Youngkee Eun,Wondo Kim,Min-Ook Kim,Hee-Jin Ko,Seong Gu Kang,Jongbaeg Kim 한국정밀공학회 2019 International Journal of Precision Engineering and Vol.6 No.4
In this paper, we present a flexible hybrid energy harvester for single- or multi-source energy collection. To increase harvesting power, piezoelectric and thermoelectric conversions are used simultaneously. The piezoelectric portion of the harvester collects energy from low-frequency kinetic motion using frequency up-conversion. The thermoelectric part is suitable for harvesting energy from a curved surface, thanks to its flexibility. By harvesting from two different energy sources (kinetic and thermal), the harvester allows for sustainable energy harvesting. The average power density obtained was 28.57 and 0.64 μW/cm2 by piezoelectric and thermoelectric conversion, respectively.
김일,허웅,박철구,정태엽,최신,한성훈,박원도 대한내과학회 2003 대한내과학회지 Vol.64 No.1
저자들은 혈뇨와 단백뇨를 주소로 내원한 31세 여자 경피증 환자에서 임상적으로 고혈압, 신발증이 없으면서 신증후군을 보이고 조직학적으로 신장 혈관의 침범없이 사구체 경화와 반월체 형성이 관찰되는 미만성 반월상 사구체신염의 증례를 경험하였기에 문헌고찰과 함께 보고하는 바이다. Scleroderma is a connective tissue disorder characterized by fibrosis of the skin, vessels and internal organs (gastrointestinal tract, lung, heart, and kidney etc.). Renal involvement in scleroderma has a clinical manifestation from subnephrotic proteinuria to renal crisis accompanied by hypertension, and shows a typical histology of intimal proliferation and fibrinoid necrosis of blood vessel without primary glomerular pathology. We experienced a case of nephrotic syndrome in a 31-old-female patient with sclerodema. but the patient has not showed a clinical feuture of hypertension or renal crisis, moreover, renal biopsy of the patient showed global sclerosis and crescent formation in the glomeruli without vessel involvement. We report this case with a brief review of literature. (Korean J Med 64:91-95, 2003)
박연희(Youn Hee Park),강은희(Eun Hee Kang),김지현(Jee Heyn Kim),박원도(Wondo Park) 대한신장학회 2000 Kidney Research and Clinical Practice Vol.19 No.1
We first report a case that demonstrates superi-mposed acute renal failure associated with rhabdo-myolysis in a patient with tsutsugamushi disease. The clinical presentation was that of insidious onset of fever, abdominal pain, back pain, renal failure and respiratory failure over about 20 days period. The renal function was progressively deteriorated and the serum creatinine concentration increased from 1.4 to 8.4mg/dL, while the patient was in a state of septic shock caused by tsutsugamushi disease. The laboratory data including increased muscle enzymes such as CK, LDH, SGOT, myoglobin, positive test for urine myoglobin, and increased uptake of bone scan were consistent with rhabdomyolysis. On consideration of the cause of rhabdomyolysis in this patient, endotoxin made in the state of septic shock had triggered a muscle necrosis and acute renal failure aggravated by dehydration and metabolic acidosis. She was recovered by the proper use of a IV doxycycline as the therapy of tsutsugamushi disease with a maintenance of renal blood flow by hydration, mannitol, bicarbonate and protection of hypotension. We suggest that rickettsial disease, especially tsutsugamushi disease can result in the acute renal failure by rhabdomyolysis.