Prognostic Value of MGMT Promoter Methylation and TP53 Mutation in Glioblastomas Depends on IDH1 Mutation

Wang, Kai,Wang, Yin-Yan,Ma, Jun,Wang, Jiang-Fei,Li, Shao-Wu,Jiang, Tao,Dai, Jian-Ping Asian Pacific Journal of Cancer Prevention 2014 Asian Pacific journal of cancer prevention Vol.15 No.24

Several molecular markers have been proposed as predictors of outcome in patients with glioblastomas. We investigated the prognostic significance of $O^6$-methylguanine-DNA methyltransferase (MGMT) promoter methylation and TP53 mutation status dependent on isocitrate dehydrogenase 1 (IDH1) mutation in glioblastoma patients. A cohort of 78 patients with histologically confirmed glioblastomas treated with radiation therapy and chemotherapy were reviewed retrospectively. We evaluated the prognostic value of MGMT promoter methylation and TP53 mutation status with regard to progression-free survival (PFS) and overall survival (OS). It was revealed that mutations in IDH1, promoter methylation of MGMT, TP53 mutation, age, Karnofsky performance status (KFS), and extension of resection were independent prognostic factors. In patients with an IDH1 mutation, those with an MGMT methylation were associated with longer PFS (p=0.016) and OS (p=0.013). Nevertheless, the presence of TP53 mutation could stratify the PFS and OS of patients with IDH1 wild type (p=0.003 and 0.029 respectively, log-rank). The MGMT promoter methylation and TP53 mutation were associated with a favorable outcome of patients with and without mutant IDH1, respectively. The results indicate that glioblastomas with MGMT methylation or TP53 mutations have improved survival that may be influenced by IDH1 mutation status.

Some Factors Affecting Freezing of Boar Semen in 5 ml Maxi-straws

Dai, J.J.,Wu, C.F.,Zhang, Defu,Yin, F.Z.,Zhang, T.Y.,Liu, D.,Wu, H.L.,Li, L.L.,Yang, S.T.,Wang, L. Asian Australasian Association of Animal Productio 2009 Animal Bioscience Vol.22 No.4

A series of experiments were conducted to determine the suitable freezing and thawing temperatures for the freezing of boar semen in 5 ml maxi-straws. The ultrastructure, in vitro fertilization (IVF) and artificial insemination (AI) of frozen-thawed semen were also be evaluated. The 5 cm freezing height gave the best results not only in post-thaw motility rate (54.00%), but also in normal acrosome morphology rate (NAR) (80.23%). There was no significant difference in the post-thaw motility between different thawing temperatures and corresponding thawing times (p>0.05); the group of $52^{\circ}C$ and 25 s gave the highest motility rate (45.00%). As a whole, not only from the motility but also the NAR, thawing at $42^{\circ}C$ was better than the other two treatments. In the freezing packages, 5 ml maxi-straw gave a little lower mobility (40%), viability rate (49.58%), plasma membrane integrity rate (53.91%) and NAR (52.65%) than the 0.25 ml straw, but there was no significant difference between the two straw volumes (p>0.05). The IVF capacity of frozen-thawed semen in this experiment was similar to fresh semen. From ultrastructure observation, the main damage to boar spermatozoa after freezing was seen in the acrosome, such as swelling and formation of vesicles. After AI in recipient Shanghai White sows, frozen-thawed semen from 5 ml maxi-straws and pellets produced 72.2% and 80% conception rate and 7.8 and 8 litter sizes, respectively, and there was no significant difference between the 5 ml maxi-straw and the pellet (p>0.05).

Thermo-responsive and magnetic molecularly imprinted Fe3O4@carbon nanospheres for selective adsorption and controlled release of 2,4,5-trichlorophenol

Jixiang Wang,Jianming Pan,Yijie Yin,Runrun Wu,Xiaohui Dai,Jiangdong Dai,Lin Gao,Hongxiang Ou 한국공업화학회 2015 Journal of Industrial and Engineering Chemistry Vol.25 No.-

Thermal-responsive and magnetic molecularly imprinted polymers (TMMIPs) based on Fe3O4@carbon (Fe3O4@C) were prepared by free radical polymerization and applied to selective adsorption and controlled release of 2,4,5-trichlorophenol (2,4,5-TCP) from aqueous solution. TMMIPs were composed of multilayer structure, and exhibited magnetic sensitivity, magnetic stability and thermal stability (especially below the. The reversible transform of mean diameter resulted from the change of testing temperature, indicating the thermo-responsive properties of TMMIPs. Selective adsorption and controlled release of 2,4,5-TCP were also investigated at 25 8C and higher temperature (such as 45 8C and 60 8C), respectively.

Theoretical Analysis and Optimization of Extrinsic Fabry-Perot Interferometer Optical-fiber Humidity-sensor Structures

Xiao Lei Yin,Ning Wang,Xiao Dan Yu,Yu Hao Li,Bo Zhang,Dai Lin Li 한국광학회 2021 Current Optics and Photonics Vol.5 No.6

The theoretical analysis and optimization of extrinsic Fabry-Perot interferometer (EFPI) opticalfiber humidity sensors are deeply investigated. For a typical dual-cavity structure composed of an optical fiber and a humidity-sensitive membrane (HSM), the changes in refractive index (RI) and initial length are discussed for polymer materials and porous oxide materials when relative humidity (RH) increases. The typical interference spectrum is simulated at different RH using MATLAB. The spectral change caused by changing HSM RI and initial length are simulated simutineously, showing different influences on humidity response. To deeply investigate the influence on RH sensitivity, the typical response sensitivity curves for different HSM lengths and air-cavity lengths are simulated. The results show that the HSM is the vital factor. Short HSM length can improve the sensitivity, but for HSM RI and length the influences on sensitivity are opposite, because of the opposite spectral-shift trend. Deep discussion and an optimization method are provided to solve this problem. According to analysis, an opaque HSM is helpful to improve sensitivity. Furthermore, if using an opaque HSM, a short air cavity and long HSM length can improve the sensor’s sensitivity These results provide deep understanding and some ideas for designing and optimizing highly sensitive EFPI fiber humidity sensors.

Transcriptome analysis of flower colour reveals the correlation between SNP and differential expression genes in Phalaenopsis

Ding Yu,Wang Ma-Yin,Yang Ding-Hai,Hao Dai-Cheng,Li Wei-Shi,Ling Peng,Xie Shang-Qian 한국유전학회 2023 Genes & Genomics Vol.45 No.12

Background Phalaenopsis is an important ornamental plant that has great economic value in the world flower market as one of the most popular flower resources. Objective To investigate the flower colour formation of Phalaenopsis at the transcription level, the genes involved in flower color formation were identified from RNA-seq in this study. Methods In this study, white and purple petals of Phalaenopsis were collected and analyzed to obtained (1) differential expression genes (DEGs) between white and purple flower color and (2) the association between single nucleotide polymorphisms (SNP) mutations and DEGs at the transcriptome level. Results The results indicated that a total of 1,175 DEGs were identified, and 718 and 457 of them were up- and down-regulated genes, respectively. Gene Ontology and pathway enrichment showed that the biosynthesis of the secondary metabolites pathway was key to color formation, and the expression of 12 crucial genes (C4H, CCoAOMT, F3’H, UA3’5’GT, PAL, 4CL, CCR, CAD, CALDH, bglx, SGTase, and E1.11.17) that are involved in the regulation of flower color in Phalaenopsis. Conclusion This study reported the association between the SNP mutations and DEGs for color formation at RNA level, and provides a new insight to further investigate the gene expression and its relationship with genetic variants from RNA-seq data in other species.

Cloning of the Correct Full Length cDNA of NF-kB-repressing Factor

Yumin Mao,Dai Jianfeng,Jin Feng,Ji Chaoneng,Zheng Zhongshou,Gu Shaohua,Wu Qihan,Wang Liu,Yin Gang,Xie Yi 한국분자세포생물학회 2003 Molecules and cells Vol.16 No.3

Machining model of position-attitude in Magnetorheological Finishing (MRF) of high-precision off-axis aspheric optical elements

CI SONG,Yifan Dai,Xiaoqiang Peng,Yin Wang,Yong Su 한국정밀공학회 2013 International Journal of Precision Engineering and Vol. No.

Two machining position-attitude model including Parent mirror Coordinate Position-Attitude Model (PCPAM) and Child mirror Coordinate Position-Attitude Model (CCPAM) are proposed for the fabrication of off-axis aspheric based on the manufacturing characteristics of off-axis aspheric and Magnetorheological Finishing (MRF) technology. The machining ability, machining difficulty and machining accuracy of the two models are researched theoretically, and the simulated results of an off-axis mirror demonstrate that CCPAM is better than PCPAM over all those three aspects. An off-axis aspheric which has the same parameters as simulated was figured by MRF and the final accuracy is 14 nm RMS after two runs costing about 9 hours. The experiment testified the validity of CCPAM in the MRF process of off-axis aspheric, and indicates that more benefit can be obtained when CCPAM is adopted to manufacture an off-axis aspheric in MRF.

Preparation of stable gelatin/sodium carboxymethylcellulose/sodium lauryl sulfonate microcapsules with ultra-thin capsule wall for electrophoretic displays

Gang Wu,Run-Ying Dai,Weigang Li,Pei-Pei Yin,Hongzheng Chen,Mang Wang 한국물리학회 2011 Current Applied Physics Vol.11 No.3

Elastic and optical transparent microcapsules with ultra-thin and compact capsule wall for electrophoretic display containing tetrachloroethylene as core material were prepared from gelatin (GE), sodium lauryl sulfonate (SLS) and sodium carboxymethylcellulose (NaCMC) by complex coacervation method. Microcapsules were characterized by scanning electron microscopy, optical microscopy, and thermogravimetric analysis. The pH value influenced formation process was monitored by recording the microstructure of the fragment of the capsules formed at different pH value. Products with branch-like structure formed with the decrease of pH value, by which the capsule wall was knitted up to form compact structure. SLS was found to play an important role in the course of capsule formation, i.e. SLS helped to increase the interaction between gelatin and NaCMC and facilitate the complex coacervation reaction. In the case of 1.0 mM SLS addition, GE/NaCMC/SLS microcapsules with ultra-thin capsule wall,200 nm in thickness, can be prepared. The capsule owns high thermal stability and good barrier property,both of which prevent core materials from penetrating outside the capsules and are favor of the practical application for the capsules in areas of electrophoretic displays.

Isoindolin-1-ones from the stems of Nicotiana tabacum and their antiviral activities

Guang-Yu Yang,Jia-Meng Dai,Zhen-Jie Li,Jin Wang,Feng-Xian Yang,Xin Liu,Jing Li,Qian Gao,Xue-Mei Li,Yin-Ke Li,Wei-Guang Wang,Min Zhou,Qiu-Fen Hu 대한약학회 2022 Archives of Pharmacal Research Vol.45 No.8

In previous studies, several isoindolin-1-oneanalogs that exhibited signifi cant anti-tobacco mosaic virus(anti-TMV) activities were isolated from Nicotiana tabacum . Since gene-editing mutants provide a new sample for thediscovery of active metabolites, we focused on the stems ofYN-18–23 (a mutant N. tabacum for gene editing with thealkaloid metabolic pathway cultivated by Yunnan TobaccoCompany), which led to the isolation of four new ( 1–4 )and four known ( 5–8 ) isoindolin-1-ones. To the best of ourknowledge, nicindole C ( 3 ) is the fi rst subclass of isoindolin-1-one bearing a pentacyclic ketone, while nicindole D ( 4 )is the fi rst example of isoindolin-1-one bearing a methylpyridin-2-(1 H )-one moiety. Compounds 1–4 were testedfor their anti-TMV activities, and the results revealed thatcompounds 1 , 3 , and 4 exhibited high anti-TMV activities atconcentrations of 20 μM with inhibition rates of 48.6, 42.8,and 71.5%, respectively. These rates are higher than the inhibitionrate of the positive control (33.2%). The mechanisticstudy of compound 4 , which had the highest anti-TMV activityrevealed that increased potentiation of defense-related enzyme activities and downregulation of expression of theNtHsp70 protein may induce resistance in tobacco againstthe viral pathogen TMV. Molecular docking studies alsorevealed that the isoindolin-1-one substructure is fundamentalfor anti-TMV activity. The methyl-pyridin-2-(1 H )-onemoiety in compound 4 and the 2-oxopropyl groups in compounds1 and 3 at the N -2 position may increase inhibitoryactivities. This study of the structure–activity relationshipis helpful for fi nding new anti-TMV activity inhibitors. Tostudy whether the isoindolin-1-ones have broader antiviralactivities, compounds 1–4 were also tested for their antirotavirusactivities. Compound 4 exhibited high anti-rotavirusactivity with a therapeutic index (TI) value of 20.7. This TI value is close to that of the positive control (20.2).

Stereo-digital image correlation in the behavior investigation of CFRP-steel composite members

Xiao-Yuan He,Yun-Tong Dai,Hai-Tao Wang,Tian-Yuan Ge,Gang Wu,Jian-Xiao Wan,Shuang-Yin Cao,Fu-Jun Yang 국제구조공학회 2017 Steel and Composite Structures, An International J Vol.23 No.6

The application of carbon fiber reinforced polymer (CFRP) in steel structures primarily includes two categories, i.e., the bond-critical application and the contact-critical application. Debonding failure and buckling failure are the main failure modes for these two applications. Conventional electrometric techniques may not provide precise results because of the limitations associated with single-point contact measurements. A nondestructive full-field measurement technique is a valuable alternative to conventional methods. In this study, the digital image correlation (DIC) technique was adopted to investigate the bond behavior and buckling behavior of CFRP-steel composite members. The CFRP-to-steel bonded joint and the CFRPstrengthened square hollow section (SHS) steel column were tested to verify the suitability of the DIC technique. The stereo- DIC technique was utilized to measure continuous deformation. The bond-slip relationship of the CFRP-to-steel interface was derived using the DIC data. Additionally, a multi-camera DIC system consisting of four stereo-DIC subsystems was proposed and applied to the compressive test of CFRP-strengthened SHS steel column. The precise buckling location and CFRP delamination of the CFRP-strengthened SHS steel column were identified. The experimental results confirm that the stereo-DIC technique can provide effective measurements for investigating the behaviors of CFRP-steel composite members.