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      • KCI등재
      • SCISCIESCOPUS

        Comparative evaluation of bioremediation techniques on oil contaminated sediments in long-term recovery of benthic community health

        Lee, Changkeun,Hong, Seongjin,Noh, Junsung,Lee, Junghyun,Yoon, Seo Joon,Kim, Taewoo,Kim, Hosang,Kwon, Bong-Oh,Lee, Hanbyul,Ha, Sung Yong,Ryu, Jongseong,Kim, Jae-Jin,Kwon, Kae Kyoung,Yim, Un Hyuk,Khim, Elsevier Applied Science Publishers 2019 Environmental pollution Vol.252 No.1

        <P><B>Abstract</B></P> <P>While various bioremediation techniques have been widely used at oil spill sites, the in situ efficiency of such techniques on recovering the benthic communities in intertidal areas has not been quantified. Here, the performance of several bioremediation tools such as emulsifiers, multi-enzyme liquid (MEL), microbes, and rice-straw was evaluated by a 90-days semi-field experiment, particularly targeting recovery of benthic community. Temporal efficiency in the removal of sedimentary total petroleum hydrocarbons (TPH), reduction of residual toxicity, and recovery of bacterial diversity, microalgal growth, and benthic production was comprehensively determined. Concentrations of TPH and amphipod mortality for all treatments rapidly decreased within the first 10 days. In addition, the density of bacteria and microphytobenthos generally increased over time for all treatments, indicating recovery in the benthic community health. However, the recovery of some nitrifying bacteria, such as the class Nitrospinia (which are sensitive to oil components) remained incomplete (13–56%) during 90 days. Combination of microbe treatments showed rapid and effective for recovering the benthic community, but after 90 days, all treatments showed high recovery efficiency. Of consideration, the “no action” treatment showed a similar level of recovery to those of microbe and MEL treatments, indicating that the natural recovery process could prevail in certain situations.</P> <P><B>Highlights</B></P> <P> <UL> <LI> Residual hydrocarbons and amphipod toxicity rapidly decreased within 10 days. </LI> <LI> Quick recovery found for most of the bacteria, but some remained incomplete at >90 d. </LI> <LI> Microphytobenthos community took more than 90 days to recover against oil exposure. </LI> <LI> Combination of microbe treatments were effective for recovering the benthic community. </LI> <LI> “No action” showed comparable recovery to others, indicating prevailing natural recovery. </LI> </UL> </P> <P><B>Graphical abstract</B></P> <P>[DISPLAY OMISSION]</P>

      • Quantified high-throughput screening of Escherichia coli producing poly(3-hydroxybutyrate) based on FACS.

        Lee, Jae Hyung,Lee, Seung Hwan,Yim, Sung Sun,Kang, Kyoung-Hee,Lee, Sang Yup,Park, Si Jae,Jeong, Ki Jun Humana Press 2013 Applied biochemistry and biotechnology Vol.170 No.7

        <P>Here, we report on a highly sensitive method for the detection of P(3HB) accumulation in Escherichia coli cells based on the automated flow cytometry system using fluorescent dyes. E. coli containing P(3HB) were stained with either BODIPY or Nile red fluorescent dye, and their staining properties were analyzed under a variety of conditions. Compared with Nile red, BODIPY was much more sensitive in staining P(3HB) and overall demonstrated a more rapid staining of cells, a greater resistance to photobleaching, and greater cell viability. In addition, we also successfully monitored heterogeneity in P(3HB) accumulation within a cell population using BODIPY staining and flow cytometry. We believe this optimized staining method using BODIPY in combination with screening by high-speed flow cytometer will be helpful in the engineering of host cells toward an enhanced production of bioplastics.</P>

      • SCOPUSKCI등재

        Clinical Characteristics of False-Positive Lymph Node on Chest CT or PET-CT Confirmed by Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration in Lung Cancer

        Lee, Jongmin,Kim, Young Kyoon,Seo, Ye Young,Choi, Eun Kyoung,Lee, Dong Soo,Kim, Yeon Sil,Hong, Sook Hee,Kang, Jin Hyoung,Lee, Kyo Young,Park, Jae Kil,Sung, Sook Whan,Kim, Hyun Bin,Park, Mi Sun,Yim, Hy The Korean Academy of Tuberculosis and Respiratory 2018 Tuberculosis and Respiratory Diseases Vol.81 No.4

        Background: Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a standard procedure to evaluate suspicious lymph node involvement of lung cancer because computed tomography (CT) and $^{18}F$-fluorodeoxyglucose positron emission tomography-CT (PET-CT) have limitations in their sensitivity and specificity. There are a number of benign causes of false positive lymph node such as anthracosis or anthracofibrosis, pneumoconiosis, old or active tuberculosis, interstitial lung disease, and other infectious conditions including pneumonia. The purpose of this study was to evaluate possible causes of false positive lymph node detected in chest CT or PET-CT. Methods: Two hundred forty-seven patients who were initially diagnosed with lung cancer between May 2009 and December 2012, and underwent EBUS-TBNA to confirm suspicious lymph node involvement by chest CT or PET-CT were analyzed for the study. Results: Of 247 cases, EBUS-TBNA confirmed malignancy in at least one lymph node in 189. The remaining 58 patients whose EBUS-TBNA results were negative were analyzed. Age ${\geq}65$, squamous cell carcinoma as the histologic type, and pneumoconiosis were related with false-positive lymph node involvement on imaging studies such as chest CT and PET-CT. Conclusion: These findings suggest that lung cancer staging should be done more carefully when a patient has clinically benign lymph node characteristics including older age, squamous cell carcinoma, and benign lung conditions.

      • KCI등재후보

        Proteome Analysis of Differential Protein Expression in Cervical Cancer Cells after Paclitaxel Treatment

        Eun-Kyoung Yim,Jun-Sang Bae,Seung-Bak Lee,Keun-Ho Lee,Chan-Joo Kim,Sung-Eun Namkoong,Soo-Jong Um,Jong-Sup Park 대한암학회 2004 Cancer Research and Treatment Vol.36 No.6

        Purpose: It is well known that infection with HPV (human papillomavirus) is the main cause of cervical cancer and certain types of HPV are recognized as carcinogens. At present, there is little information regarding the antineoplastic mechanism of paclitaxel against cervical carcinoma cells. We thus tried to analyze differential protein expression and antineoplastic mechanism-related proteins after paclitaxel treatment on cervical cancer cells by using a proteomic analysis and to investigate the mechanism of action. Materials and Methods: Using proteomics analysis including 2-DE and MALDI-TOF-MS, we detected the antineoplastic mechanism-related proteins. Then, we performed western blot analysis for apoptosis- and transformation- related proteins to confirm expression patterns derived from proteome analysis after paclitaxel treatment. Results: We identified several cellular proteins that are responsive to paclitaxel treatment in HeLa cells using proteomics methods. Paclitaxel treatment elevated main-ly apoptosis, immune response and cell cycle check point- related proteins. On the other hand, paclitaxel treatment diminished growth factor/oncogene-related proteins and transcription regulation-related proteins. Also, in the HPV-associated cervical carcinoma cells, paclitaxel demonstrated anti-proliferative activity through the membrane death receptor-mediated apoptotic pathway and the mitochondrial-mediated pathway. Conclusion: Identification and characterization of functionally modulated proteins involved in anti-cancer regulatory events should lead to a better understanding of the long-term actions of paclitaxel at the molecular level and will contribute to the future development of novel therapeutic drug treatments based upon current therapies.(Cancer Res Treat. 2004;36:395-399)

      • KCI등재

        상피성 난소암에서 Wnt 1과 β-catenin의 발현에 관한 연구

        임경란 ( Kyoung Ran Yim ),이찬 ( Chan Lee ),김용민 ( Yong Min Kim ),김광일 ( Kwang Il Kim ),김승조 ( Seung Jo Kim ),황윤영 ( Youn Yeung Hwang ),이선영 ( Seon Yeong Lee ),나영정 ( Young Jeong Na ),정상근 ( Sang Geun Jeong ),오예은 대한산부인과학회 2008 Obstetrics & Gynecology Science Vol.51 No.9

        목적: 난소종양과 정상난소상피조직을 이용한 면역조직화학염색법을 통하여 난소종양의 상피세포에서 Wnt 1과 β-catenin의 발현 양상을 알아보고자 한다. 방법: 포천중문의과대학교 분당차병원 부인암센터에서 2000년 1월부터 2005년 12월까지 얻어진 난소종양과 정상난소상피조직의 포르말린 고정조직과 파라핀 포매조직을 이용하여 면역조직화학염색을 시행하였다. 실험 결과들은 SPSS 10.1을 이용하여 통계 분석하였으며, P<0.05인 경우 통계학적으로 의미 있는 것으로 판정하였다. 결과: 전체 난소상피조직 114예를 면역조직화학염색하였으며, 이 중 악성 종양은 54예였으며, 경계성 종양은 40예 그리고 양성 종양 12예, 정상난소상피조직이 8예였다. Wnt 1은 악성 종양의 51.9%, 경계성 종양의 32.5%, 양성 종양의 18.2%에서 면역조직화학염색에 양성 소견을 보였고, 모든 정상난소상피에서는 음성 소견을 보였다 (P<0.05). 상피성 난소암 중 투명세포 암 상피조직에서만 양성 소견을 보였다. β-catenin은 자궁내막모양 암의 28.6%에서 양성 소견을 보였다 (P<0.05). 결론: 난소상피조직을 이용한 본 연구 결과, Wnt 1의 과발현이 직접적으로 핵 세포질 내 β-catenin의 과발현을 유발시키지는 않는 것으로 생각되었다. 그러나 자궁내막모양암이나 투명세포암 등의 상피성 난소암의 발암 과정에 Wnt 1과 β-catenin이 관여하는 것으로 사료된다. 향후 보다 큰 규모의 연구를 통해 Wnt 신호의 다른 요소들에 대한 분석이 이루어진다면 상피성 난소암의 발암 과정에서의 역할이 규명될 수 있을 것이며, 이를 기초로 하여 난소암의 조기 진단, 치료 및 새로운 생물표지자의 개발에 유용한 정보를 제공해 줄 수 있을 것이다. Objective: We were trying to identify the expression of Wnt 1 and β-catenin in normal ovarian epithelium and epithelial ovarian tumor. Methods: We used archival formalin-fixed and paraffin-embedded tissues from Comprehensive Gynecologic Cancer Center and the Department of Pathology at Bundang CHA Hospital from 2000 to 2005. Immunohistochemical staining for Wnt 1 and β-catenin was performed on the ovarian epithelial tissues. Statistical analyses were performed with SPSS 10.1 for Windows and significance was defined as P<0.05. Results: Of 114 cases, the cases were composed of 54 carcinomas, 40 borderline tumors, 12 benign tumors and 8 normal control ovarian tissues. Abnormal nucleocytoplasmic expression of β-catenin was found in 4 endometrioid carcinomas. The nuclear expression of β-catenin was found especially in the components of the endometrioid carcinoma (28.6%, P<0.05). Wnt 1 was overexpressed in all 9 clear cell carcinomas, but not frequent in the other types of malignant tumors (P<0.05). We found a statistically significant correlation between β-catenin nuclear localization and endometrioid carcinomas. And we found a significant correlation between Wnt 1 expression and clear cell carcinomas. Conclusion: It does not seem that Wnt 1 over expression directly provoke the nuclear localization of β-catenin. But, deregulation of β-catenin and Wnt 1 may play a role in the pathogenesis of ovarian epithelial carcinogenesis of endometriod carcinoma and clear cell carcinoma. Evaluating this avenue of regulation of β-catenin and Wnt protein in ovarian epithelial carcinoma may provide a new direction for early diagnosis and treatment in ovarian epithelial carcinoma and provide opportunities for making a certain biomarkers.

      • KCI등재후보

        영구형 심박동기 삽입 후 유의한 삼첨판 역류증 발생의 예측인자

        이경진 ( Kyoung Jin Lee ),김계훈 ( Kye Hun Kim ),임이랑 ( Yi Rang Yim ),박혁진 ( Hyuk Jin Park ),이승헌 ( Seung Hun Lee ),김지은 ( Ji Eun Kim ),정형기 ( Hyung Ki Jeong ),윤현주 ( Hyun Ju Yoon ),윤남식 ( Nam Sik Yoon ),홍영준 ( You 대한내과학회 2014 대한내과학회지 Vol.86 No.5

        Background/Aims: We sought to identify predictors of significant tricuspid regurgitation (TR) after successful permanent pacemaker (PPM) implantation in Korean patients. Methods: Of 404 patients who underwent PPM implantation, 187 patients who had both baseline and follow-up echocardiographic examinations were assigned to one of two groups: no development or change in TR (Group I, n = 172, 65.5 ± 13.7 years) versus the development of significant TR (Group II, n = 15, 72.1 ± 8.3 years). Clinical, laboratory, and echocardiographic variables were compared between the two groups. Results: Overall, the grade of TR was significantly aggravated from 0.46 ± 0.73 to 0.81 ± 0.84 (p < 0.001) during 3.1 ± 1.8 years of follow-up (0.49 ± 0.75 to 0.69 ± 0.74 in Group I, p < 0.001; 0.13 ± 0.35 to 2.27 ± 0.46 in Group II, p < 0.001). The de novo development or aggravation of TR was observed in 66 patients (35.3%), and significant TR developed in 15 patients (8.0%). The presence of atrial fibrillation (AF) was significantly higher (53.3 vs. 18.6%, p = 0.002), and the implantation of a ventricle pacing, ventricle sensing, inhibited by ventricular event (VVI) type pacemaker was more frequent in Group II than in Group I (46.7 vs. 15.1%, p = 0.002). Other variables were not different between the groups. Conclusions: The development or aggravation of TR was not rare after successful PPM implantation, even though the development of significant TR was uncommon. The presence of AF and the implantation of a VVI type pacemaker were predictors of the development of significant TR. Together, the results of this study suggest that the development or aggravation of TR should be monitored carefully after PPM implantation. (Korean J Med 2014;86:577-584)

      • SCOPUSKCI등재

        Foliar Colonization and Growth Promotion of Red Pepper (Capsicum annuum L.) by Methylobacterium oryzae CBMB20

        ( Min Kyoung Lee ),( Puneet Singh Chauhan ),( Woo Jong Yim ),( Gyeong Ja Lee ),( Young Sang Kim ),( Kee Woong Park ),( Tong Min Sa ) 한국응용생명화학회(구 한국농화학회) 2011 Journal of Applied Biological Chemistry (J. Appl. Vol.54 No.2

        In order to exploit Methylobacterium oryzae CBMB20 as of plant growth promoting agent, different inoculation methods have been evaluated. The present study aimed to evaluate soil, foliar, and soil+foliar inoculations of M. oryzae CBMB20 to improve the growth, fruit yield, and nutrient uptake of red pepper (Capsicum annuum L.) under greenhouse conditions. The population range of green fluorescent protein (gfp)-tagged M. oryzae CBMB20 using the three inoculation methods was 2.5-2.9 log10 cfu/g in the rhizosphere and 4.5-6.0 log10 cfu/g in the phyllosphere of red pepper plants. Confocal laser scanning microscopy results confirmed the colonization of M. oryzae CBMB20 endophytically on leaf surface. Plant height, fruit dry weight, and total biomass were significantly higher (p≤0.05) in all M. oryzae CBMB20 inoculation methods as compared to noninoculated control. Furthermore, uptake of mineral nutrients such as N, P, K, Ca, and Mg in red pepper plants in all M. oryzae CBMB20 inoculation methods was higher than in non-inoculated control. Comparative results of inoculation methods clearly demonstrated that soil+foliar inoculation of M. oryzae CBMB20 lead to the highest biomass accumulation and nutrient uptake which may be due to its efficient colonization in the red pepper rhizosphere and phyllosphere.

      • KCI등재

        Inoculation Effect of Methylobacterium suomienseon Growth of Red Pepper under Different Levels of Organic and Chemical Fertilizers

        Min-Kyoung Lee(이민경),Gil-Seung Lee(이길승),Woo-Jong Yim(임우종),In-Soo Hong(홍인수),Pitchai Palaniappan,Md. Ashaduzzaman Siddikee,Hari P. Deka Boruah,Munusamy Madhaiyan,Ki-Sup Ahn(안기섭),Tongmin Sa(사동민) 한국토양비료학회 2009 한국토양비료학회지 Vol.42 No.4

        화학비료와 유기질비료를 시비 수준 및 Methylobacterium suomiense CBMB120의 접종이 고추 생육에 미치는 영향을 확인하기 위하여 유기질비료와 화학비료의 시비량을 권장시용수준의 100%, 75% 및 50%로 처리하고 Methylobacterium suomiense CBMB120을 접종 한 후 정식 후 19, 36, 및 166일에 작물의 높이를 측정하였으며 이식 후 166일에 건물량 측정하였다. 균주를 접종한 처리구의 식물체 높이는 정식 후 19, 36일에 각각 14.17%, 10.03% 증가하였다. 건물 중 역시 10.30%, 6.84% 증가하여 유의성 있는 차이를 나타내었다. 또한 균주 접종은 유기질 비료 100% 시용구는 36일 후 고도의 유의성(p<0.01)을 갖는 차이를 보였으며 화학 비료 100% 시용구는 19일 후 고도의 유의성(p<0.01)을 갖는 차이를 나타내었다. 화학비료 100% 시용구에 균주를 접종하지 않은 처리 구와 화학비료 75% 시용구에 균주를 접종한 처리구의 생육을 분석한 결과 유의성 있는 차이가 없는 것으로 나타났다. 이는 향후 다양한 처리량 및 처리방법의 연구를 통하여 Methylobacterium suomiense CBMB120 균주의 접종이 화학비료를 일정 부분 감비 할 수 있다는 가능성을 시사한다. Use of plant growth promoting symbiotic and non-symbiotic free-living beneficial bacteria as external source of nitrogen is a major research concern for sustainable crop production in the 21st century. In view of this, an experiment was conducted under controlled conditions to determine the effects of inoculation with Methylobacterium suomiense CBMB120, a plant growth promoting (PGP) root and shoot colonizer on red pepper, for the purpose of reducing external chemical nitrogen fertilization. Amendments with organic fertilizer and chemical fertilizer in the form of NPK were made at dosages of 50%, 75% and 100%, at 425 and 115 kg/ha-1 measurements. The soil type used was loam, with a pH of 5.13. The growth responses were measured as plant height at 19, 36 and 166 days after transplantation and final biomass production after 166 days. It was found that inoculation with M. suomiense CBMB120 promotes plant height increase during the active growth phase at 19 and 36 days by 14.17% and 10.03%, respectively. Thereafter, the bacteria inoculated plantlets showed canopy size increment. A highly significant inoculation effect on plant height at p<0.01 level was found for 100% level of organic matter and chemical amendment in red pepper plantlets after 36 days and 19 days from transplantation. Furthermore, there was a significantly higher (10.30% and 6.84%) dry biomass accumulation in M. suomiense CBMB120 inoculated plants compared to un-inoculated ones. A 25% reduction in the application of chemical nitrogen can be inferred with inoculation of M. suomiense CBMB120 at with comparable results to that of 100% chemical fertilization alone. Enumeration of total bacteria in rhizosphere soil confirms that the introduced bacteria can multiply along ther hizosphere soil. Large scale field study may lead to the development of M. suomiense CBMB120 as an efficient biofertilizer.

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