기침소리 데이터 전처리에 따른 CNN기반 분류모델의 성능 평가

구본철(Koo Bon Cheul),백문기(Back Moon Ki),이규철(Lee Kyu Chul) 한국통신학회 2019 한국통신학회 학술대회논문집 Vol.2019 No.6

Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes

Soo-Cheul Yoo,Bon-Hyuk Koo,Choon-Tak Kwon,Nam-Chon Paek 한국육종학회 2014 한국육종학회 심포지엄 Vol.2014 No.07

Heading date and photoperiod sensitivity are fundamental traits that determine rice adaptation to a wide range of geographic environments. By quantitative trait locus (QTL) mapping and candidate gene analysis using wholegenome re-sequencing, we found that Oryza sativa Pseudo-Response Regulator37 (OsPRR37; hereafter PRR37) is responsible for the Early heading7-2 (EH7-2)/Heading date2 (Hd2) QTL which was identified from a cross of late-heading rice ‘Milyang23 (M23)’ and early-heading rice ‘H143’. H143 contains a missense mutation of an invariantly conserved amino acid in the CCT (CONSTANS, CO-like, and TOC1) domain of PRR37 protein. In the world rice collection, different types of nonfunctional PRR37 alleles were found in many European and Asian rice cultivars. Notably, the japonica varieties harboring nonfunctional alleles of both Ghd7/Hd4 and PRR37/Hd2 flower extremely early under natural long-day conditions, and are adapted to the northernmost regions of rice cultivation, up to 53° N latitude. Genetic analysis revealed that the effects of PRR37 and Ghd7 alleles on heading date are additive, and PRR37 down-regulates Hd3a expression to suppress flowering under long-day conditions. Our results demonstrate that natural variations in PRR37/Hd2 and Ghd7/Hd4 have contributed to the expansion of rice cultivation to temperate and cooler regions

Casein Kinases I and 2α Phosphorylate Oryza Sativa Pseudo-Response Regulator 37 (OsPRR37) in Photoperiodic Flowering in Rice

Kwon, Choon-Tak,Koo, Bon-Hyuk,Kim, Dami,Yoo, Soo-Cheul,Paek, Nam-Chon Korean Society for Molecular and Cellular Biology 2015 Molecules and cells Vol.38 No.1

Flowering time (or heading date) is controlled by intrinsic genetic programs in response to environmental cues, such as photoperiod and temperature. Rice, a facultative short-day (SD) plant, flowers early in SD and late in long-day (LD) conditions. Casein kinases (CKs) generally act as positive regulators in many signaling pathways in plants. In rice, Heading date 6 (Hd6) and Hd16 encode $CK2{\alpha}$ and CKI, respectively, and mainly function to delay flowering time. Additionally, the major LD-dependent floral repressors Hd2/Oryza sativa Pseudo-Response Regulator 37 (OsPRR37;hereafter PRR37) and Ghd7 also confer strong photoperiod sensitivity. In floral induction, Hd16 acts upstream of Ghd7 and CKI interacts with and phosphorylates Ghd7. In addition, Hd6 and Hd16 also act upstream of Hd2. However, whether CKI and $CK2{\alpha}$ directly regulate the function of PRR37 remains unclear. Here, we use in vitro pull-down and in vivo bimolecular fluorescence complementation assays to show that CKI and $CK2{\alpha}$ interact with PRR37. We further use in vitro kinase assays to show that CKI and $CK2{\alpha}$ phosphorylate different regions of PRR37. Our results indicate that direct posttranslational modification of PRR37 mediates the genetic interactions between these two protein kinases and PRR37. The significance of CK-mediated phosphorylation for PRR37 and Ghd7 function is discussed.

Natural variation in Early flowering1 (EL1) contributes to alteration of heading date and gibberellin signaling in rice

Choon-Tak Kwon,Sung-Hwan Cho,Bon-Hyuk Koo,Soo-Cheul Yoo,Nam-Chon Paek 한국육종학회 2012 한국육종학회 심포지엄 Vol.2012 No.07

The timing of flowering, which is of crucial importance for plant growth and survival, is controlled by intricate pathways. To identify heading date-QTL, we constructed high resolution map on chromosome 3 using heterogeneous inbred family-near isogenic lines (H-NILs) derived from F7 RILs generated by the cross of early-heading japonica rice ‘H143’ and middle-late-heading indica-japonica hybrid cultivar ‘Milyang23’. QTL and subsequent sequence analysis using H-NILs revealed that the gene underlining QTL EH3, which is detected in the region of Hd16, is EL1 encoding casein kinase I (CKI). Two types of single amino acid substitutions in Ser/Thr kinase domain of EL1 were found in various cultivars, among which H-NIL(eh3) caused loss of function in EL1 demonstrated by altered heading date and GA response. Moreover, the phosphorylation of EL1 appears to involve in EL1 activity to regulate heading date. Transcriptional analysis clearly indicated that H-NIL(EH3) suppresses heading under LD conditions by down-regulating Ehd1, there by Hd3a and RFT1 expressions were not induced, suggesting that EL1 is photoperiod-sensitive and functions as a LD-specific suppressor of heading. Further characterization suggested that EL1 is likely to involve in anther development and seed settings by regulating GAMYB expression. Our study demonstrated that the genetic basis of natural variation occurred in ‘H143’ was revealed by QTL analysis using H-NILs, and EH3/EL1 function is crucial for heading and development in rice. The genetic natural variation of H-NIL(eh3) may have contributed to adaptation of rice cultivation to the higher regions by regulating the expression of rice flowering activator genes and GA signaling.

스마트 그리드에서 RDF 데이터 접근 속도 향상을 위한 클러스터링 알고리즘 기반 저장 방법 연구

이동재(Dong-Jae Lee),구본철(Bon-Cheul Koo),김인아(InA Kim),이규철(Kyu-Chul Lee) 한국정보과학회 2018 한국정보과학회 학술발표논문집 Vol.2018 No.12

$CO_2$ 농도 증가에 따른 벼의 생육 반응

김영국,신진철,최민규,구본철,김석동,Kim Young-Guk,Shin Jin-Chul,Choi Min-Gyu,Koo Bon-Cheul,Kim Seok-Dong 한국작물학회 2005 Korean journal of crop science Vol.50 No.3

대기중의 $CO_2$ 농도 증가에 따른 벼의 생육단계별 생육 및 광합성 관련 반응을 관찰한 결과는 다음과 같았다. 1. 벼 유묘기에는 $CO_2$ 농도가 증가하고 처리기간이 길어질수록 일품벼, 추청벼, 화성벼 모두 초장, 경수, 엽면적이 증가하였고 처리 후 18일경에는 대비구에 비해 500ppm, 700ppm에서 건물중 $35\~47\%$ 증가하는 경향이었다(3품종 평균). 2. 벼 유모기의 광합성율은 높은 $CO_2$>농도에서는 증가되었으나 처리기간이 길어져서 생육이 진전될수록 약간 감소하는 경향이었다. 3. 유수형성기 및 출수기에는 $CO_2$농도가 증가함에 따라 초장, 건물 중은 증가되었으나 SPAD값과 광합성속도, 기공전도도, 증산율 등은 처리기간이 길어질수록 감소하였다. 4. 출수 직전부터 55일간 처리한 벼의 수량은 대비구에 비해 500ppm, 700ppm 처리구에서 세 품종 모두 큰 차이가 없었다. 5. $CO_2$농도에 따른 광합성 속도 및 증산량은 농도가 높아지고 광합성속도가 빨라질수록 증산량은 낮아져 수분 이용 효율이 높은 것으로 나타났다. The effects of $CO_2$ enrichment on growth of rice (Oryza sativa L.) were examined. The plants were grown in growth chambers with a 12-h photoperiod and a day/night temperature of $28/21^{\circ}C$ of the seedling stage and $30/23^{\circ}C$ after the panicle initiation stage. The plants were exposed to two elevated $CO_2$ of 500, 700 ppm and ambient levels (350 ppm). At early growth stage of three varieties (IIpumbyeo, Chucheongbyeo, Hwaseongbyeo), the elevated $CO_2$ increased plant height, tiller, leaf area and dry weight. The photosynthetic rate was decreased at 24 days after treatment (DAT) compared to 11 DAT. The elevated $CO_2$ increased plant height and dry weight at panicle initiation stage (PIS) and heading stage (HS) of three varieties (IIpumbyeo, Chucheongbyeo, Hwaseongbyeo). The photosynthetic rate, stomatal conductance, evapotranspiration rate were decreased at the long days of treatment than that of short days. At entire stages, the elevated $CO_2$ increased the water use efficiency of rice plant because evapotranspiration rate was lowered at the elevated $CO_2$ than ambient levels.

한국 제주도 한란의 생태 진단에 기초한 보전 및 서식지 복원에 관한 연구

정지영 ( Jung Ji-young ),신재권 ( Jae-kwon Shin ),김한결 ( Han-gyeoul Kim ),변준기 ( Jun-gi Byun ),피정훈 ( Jung-hun Pi ),구본열 ( Bon-yeol Koo ),박정근 ( Jeong-geun Park ),서강욱 ( Gang-uk Suh ),이철호 ( Cheul-ho Lee ),손성원 ( S 한국하천호수학회(구 한국육수학회) 2016 생태와 환경 Vol.49 No.1

한란은 불법 채취 및 서식 환경 변화에 의해 지속성 확보가 위협받고 있음에도 불구하고, 종의 분포 변화, 개체군 및 자생 특성, 그리고 이에 따른 서식지 복원에 관한 연구가 부족하다. 본 연구에서는 2014년 제주도 일원의 한란자생지 탐사를 통하여 확인된 27개의 한란 자생지를 대상으로 분포 면적의 변화, 개체군 및 자생 환경을 분석하였으며, 한란의 종 특성을 고려한 대체 서식지 조성 전략을 마련하였다. 조사된 한란은 제주도 해발 200 m~700m 사이에 위치하였다. 2004년과 비교하여 한란의 분포 범위는 크게 감소 (-82%)하였다. 한란은 사면형 (예, 선돌지역) 및 계곡형 (예, 따라비오름) 서식지, 그리고 졸참나무 및 개서어나무가 우점하는 낙엽활엽수림 (선돌) 및 구실잣밤나무가 우점하는 상록활엽수림 모두에서 자라고 있어 특정한 서식 환경 선호성은 관찰되지 않았고, 공중습도가 높은 계곡부에서 보다 많이 관찰되었다. 조사된 총 96개체의 한란의 평균 밀도는 942.6 개체 ha^-1로 조사되었고, 모두 소형(평균 잎 길이=10.7±1.1 cm 및 촉 수=1.2±0.2) 개체였으며, 개화 및 결실 개체는 관찰되지 않았다. 연구 결과에 의하면, 제주 한란은 멸종위기 (Critically Endangered, CR) 식물로 분류된다. 한란의 표현형 유연성 (Phenotypic plasticity)은 한란이 그늘진 서식지 환경에서 지속할 수 있도록 도움을 준 것으로 판단되며, 최근의 닫힌 임과 및 낮은 광환경은 한란의 생활사에 부정적인 영향을 주고 있었다. 한란 서식지 복원은 초지 또는 낮은 관목수종의 개방된 환경을 조성하는 것이 중요하다. Cymbidium kanran Makino is being threatened in its own habitats due illegal collecting and habitat changes by vegetation growth along historical landuse change. In this study, we established habitat restoration model for conservation of C. kanran based on ecological diagnosis. Through exploration to Jeju Island in 2014 and 2015, we identified 27 unknown habitats of C. kanran and in there, abiotic variables and vegetation structure and composition were quantified. Altitudinal distribution of C. kanran was between 200m ~700 m a.s.l. and compared to distribution in 2004, Area of Occupation (AOO) decreased at 82%. Specific habitat affinity was not observed by evenly found in mountain slope and valley and summergreen and evergreen broadleaved forests, but likely more abundant in valley habitats with higher soil and ambient moisture. Total of 96 individual of C. kanran was observed with an average density of 942.6 individuals ha^-1. The plants showed relatively short leaf length (average=10.7 cm±1.1 cm) and small number of pseudo bulbs (1.2±0.2). Flowering and fruiting individuals were not observed in field. C. kanran was classified into endangered plant species as CR (Critically Endangered) category by IUCN criteria. Phenotypic plasticity of C. kanran was likely support to sustain in more shaded habitat environment and recent habatat changes to closed canopy and low light availability may exhibit negatively effects to C. kanran`s life history. Restoring C. kanran habitat should create open environment as grassland and low woody species density.