The miR-146a rs2910164 G > C Polymorphism and Susceptibility to Digestive Cancer in Chinese

Wu, Dong,Wang, Fan,Dai, Wei-Qi,He, Lei,Lu, Jie,Xu, Ling,Guo, Chuan-Yong Asian Pacific Journal of Cancer Prevention 2013 Asian Pacific journal of cancer prevention Vol.14 No.1

Background: Several studies have reported the role of the miR-146a rs2910164 G > C polymorphism as a susceptibility factor for several digestive cancers. However, the results have been controversial. Therefore, we conducted the present meta-analysis to obtain the most reliable estimate of the association. Methods: PubMed, Embase and Web of Science databases were searched. Crude odds ratios (ORs) with 95% confidence intervals (CIs) were extracted and pooled to assess the strength of the association between miR-146a rs2910164 G > C polymorphism and digestive cancer risk. A total of four eligible studies including 3,447 cases and 5,041 controls based on the search criteria were included. Results: We observed that miR-146a rs2910164 G > C polymorphism was not significantly correlated with digestive cancer risks when all studies were pooled into the meta-analysis. While we found that miR-146a rs2910164 polymorphism was not associated with gastric cancer, it was significantly linked with hepatocellular cancer risk (the homozygote codominant model: OR = 1.40, 95% CI = 1.04-1.87). In the stratified analysis by ethnicity, significant associations were observed in Chinese population for the allele contrast model (OR = 1.25; 95% CI = 1.12-1.38), for the homozygote codominant model (OR = 1.62; 95% CI = 1.28-2.04), and for the recessive model (OR = 1.38; 95% CI = 1.16-1.64). However, studies with Asian groups presented no significant association for all genetic models. Conclusions: This meta-analysis suggests that the miR-146a rs2910164 G > C polymorphism is a low-penetrant risk factor for digestive cancers in Chinese.

Isolation and Identification of Bacillus amyloliquefaciens BY01 with High Productivity of Menaquinone for Cheonggukjang Production

Wu, Wei-Jie,Ahn, Byung-Yong The Korean Society for Applied Biological Chemistr 2011 Applied Biological Chemistry (Appl Biol Chem) Vol.54 No.5

To develop a cheonggukjang with high content of menaquinone (MK), bacterial strains were isolated from good quality cheonggukjang, and MK productivities of isolated strains were determined by high-performance liquid chromatography. After sensory evaluation and MK determination, a potential probiotics, BY01, with acceptable sensory quality and high productivity of MK was isolated. Fermentation under aerobic condition produced more MK than that obtained under anaerobic condition, and the synthesized MK mainly remained in the form of endocellular deposit. To identify species of strain BY01, biochemical tests and gyrase B gene (gyrB) sequence analysis were carried out, and strain BY01 was identified as Bacillus amyloliquefaciens. The content of MK in cheonggukjang fermented with B. amyloliquefaciens BY01 reached 7.54 ${\mu}g$/g, 2-fold higher than that of commercial cheonggukjang products. This is the first report on the isolation of B. amyloliquefaciens as a superior MK producer in cheonggukjang fermentation.

Fate and Bioaccumulation of Polynuclear Aromatic Hydrocarbons in Coastal Sediment

Yong Zhang,Ya-Xian Zhu,Jie-Zhang,Feng Ren,Feng-Lan Zheng,Sang-Jin Kim(김상진),H. W. Lam,Hong Hua-sheng,S. S. Wu 한국해양환경·에너지학회 2001 한국해양환경·에너지학회 학술대회논문집 Vol.2001 No.-

Ethanol Production by Repeated Batch and Continuous Fermentations by Saccharomyces cerevisiae Immobilized in a Fibrous Bed Bioreactor

( Yong Chen ),( Qingguo Liu ),( Tao Zhou ),( Bingbing Li ),( Shiwei Yao ),( An Li ),( Jing Lan Wu ),( Han Jie Ying ) 한국미생물 · 생명공학회 2013 Journal of microbiology and biotechnology Vol.23 No.4

In this work, a fibrous bed bioreactor with high specific surface area and good adsorption efficacy for S. cerevisiae cells was used as the immobilization matrix in the production of ethanol. In batch fermentation, an optimal ethanol concentration of 91.36 g/l and productivity of 4.57 g l-1 h-1 were obtained at an initial sugar concentration of 200 g/l. The ethanol productivity achieved by the immobilized cells was 41.93% higher than that obtained from free cells. Ethanol production in a 22-cycle repeated batch fermentation demonstrated the enhanced stability of the immobilized yeast cells. Under continuous fermentation in packed-bed reactors, a maximum ethanol concentration of 108.14 g/l and a productivity of 14.71 g l-1 h-1 were attained at 35oC, and a dilution rate of 0.136 h-1 with 250 g/l glucose.

Fabrication of Bioactive Scaffold of Poly(ɛ-Caprolactone) and Nanofiber Wollastonite Composite

Wei, Jie,Wu, Xiaohui,Liu, Changsheng,Jia, Junfeng,Heo, Su-jin,Kim, Seung-eon,Hyun, Yong-taek,Shin, Jung-Woog Wiley (Blackwell Publishing) 2009 Journal of the American Ceramic Society Vol.92 No.5

Interactive Effect of Bisphenol A (BPA) Exposure with -22G/C Polymorphism in LOX Gene on the Risk of Osteosarcoma

Jia, Jie,Tian, Qing,Liu, Yong,Shao, Zeng-Wu,Yang, Shu-Hua Asian Pacific Journal of Cancer Prevention 2013 Asian Pacific journal of cancer prevention Vol.14 No.6

Background: Osteosarcomas have many established risk factors, both genetic and environmental, but by themselves these explain only part of the total cancer incidence. Bisphenol A (BPA) is an environmental estrogen associated with risk of several kinds of tumour. The lysyl oxidase gene (LOX) may also contribute to risk of tumours including osteosarcomas. Here, we investigated possible interactions of BPA and a LOX polymorphism on the risk of osteosarcoma. Method: The present hospital-based case-control study included 106 cancer patients and 112 controls from a Chinese population. Internal burden of BPA exposure was assessed using high-performance liquid chromatography-mass spectrometry (HPLC-MS) method. Genotypes were determined using PCR-RFLP methods. Results: Compared with those in low BPA exposure group, subjects with BPA more than or equal to median value had significant increased risk of osteosarcoma among subjects who carried GC or CC genotypes. A significant interaction with BPA level and the -22G/C polymorphism was observed for osteosarcoma overall, osteosarcoma affecting knee and osteosarcoma affecting hip, as $P_{forinteraction}$ = 0.036 for osteosarcoma overall; $P_{forinteraction}$ = 0.024 for osteosarcoma affecting knee; and $P_{forinteraction}$ = 0.017 for osteosarcoma affecting hip. Conclusions: The results suggest that BPA exposure interacts with the -22G/C polymorphism of the LOX gene to increase the risk of osteosarcoma.

A Glucose-Assisted Hydrothermal Reaction for Directly Transforming Metal-Organic Frameworks into Hollow Carbonaceous Materials

Wang, Jie,Luo, Xiliang,Young, Christine,Kim, Jeonghun,Kaneti, Yusuf Valentino,You, Jungmok,Kang, Yong-Mook,Yamauchi, Yusuke,Wu, Kevin C.-W. American Chemical Society 2018 Chemistry of materials Vol.30 No.13

<P>Hollow micro-/nanostructures with controllable shape, size, and composition are an intriguing class of porous materials with a promising potential for various applications. Metal-organic frameworks (MOFs) have been attractive as promising precursors for preparing carbon materials with various kinds of nanoartchitectures owing to the rich variety in their composition, morphology, and structure. Herein, we report a glucose-assisted hydrothermal method for directly transforming MOFs into hollow carbonaceous materials. During the hydrothermal reaction, the MOF particles (zeolitic imidazolate frameworks-8, ZIF-8) are decomposed, which is induced by the acid generated from the hydrolysis of glucose. At the same time, the species released from the decomposed MOF continuously diffuse out and react with the glucose-derived polymers, resulting in the formation of hollow Zn-containing carbonaceous composites. Following calcination at 900 °C and 500 °C under a nitrogen atmosphere, hollow carbon and zinc oxide/carbon (ZnO/C) materials can be obtained, respectively. The obtained ZnO/C materials with hollow interiors exhibit more active sites, which are supported by their superior electrochemical performance for supercapacitor applications. The proposed method in this work provides a pathway for synthesizing a variety of multicompositional inorganic hollow structures from MOFs, which would facilitate their potential use in practical applications.</P> [FIG OMISSION]</BR>

Single-cell transcriptomic analysis reveals transcriptional and cell subpopulation differences between human and pig immune cells

Li Jie,Xu Yanan,Zhang Jiayu,Zhang Zhaoqi,Guo Han,Wei Dong,Wu Changhong,Hai Tang,Sun Hai-Xi,Zhao Yong 한국유전학회 2024 Genes & Genomics Vol.46 No.3

Background The pig is a promising donor candidate for xenotransplantation. Understanding the differences between human and swine immune systems is critical for addressing xenotransplant rejection and hematopoietic reconstitution. The gene transcriptional profile differences between human and pig immune cell subpopulations have not been studied. To assess the similarities and differences between pigs and humans at the levels of gene transcriptional profiles or cell subpopulations are important for better understanding the cross-species similarity of humans and pigs, and it would help establish the fundamental principles necessary to genetically engineer donor pigs and improve xenotransplantation. Objective To assess the gene transcriptional similarities and differences between pigs and humans. Methods Two pigs and two healthy humans’ PBMCs were sorted for 10 × genomics single-cell sequence. We generated integrated human-pig scRNA-seq data from human and pig PBMCs and defined the overall gene expression landscape of pig peripheral blood immune cell subpopulations by updating the set of human-porcine homologous genes. The subsets of immune cells were detected by flow cytometry. Results There were significantly less T cells, NK cells and monocytes but more B cells in pig peripheral blood than those in human peripheral blood. High oxidative phosphorylation, HIF-1, glycolysis, and lysosome-related gene expressions in pig CD14+ monocytes were observed, whereas pig CD14+ monocytes exhibited lower levels of cytokine receptors and JAK-STAT-related genes. Pig activated CD4+T cells decreased cell adhesion and inflammation, while enriched for migration and activation processes. Porcine GNLY+CD8+T cells reduced cytotoxicity and increased proliferation compared with human GNLY+CD8+T cells. Pig CD2+CD8+γδT cells were functionally homologous to human CD2+CD4+ γδT cells. Pig CD2−CD8−γδT cells expressed genes with quiescent and precursor characteristics, while CD2−CD8+γδT cells expressed migration and memory-related molecules. Pig CD24+ and CD5+B cells are associated with inflammatory responses. Conclusion Our research with integrated scRNA-seq assays identified the different distribution of pig immune cell subpopulations and the different transcriptional profiles of human and pig immune cells. This study enables a deeper understanding of the development and function of porcine immune cells. Background The pig is a promising donor candidate for xenotransplantation. Understanding the differences between human and swine immune systems is critical for addressing xenotransplant rejection and hematopoietic reconstitution. The gene transcriptional profile differences between human and pig immune cell subpopulations have not been studied. To assess the similarities and differences between pigs and humans at the levels of gene transcriptional profiles or cell subpopulations are important for better understanding the cross-species similarity of humans and pigs, and it would help establish the fundamental principles necessary to genetically engineer donor pigs and improve xenotransplantation. Objective To assess the gene transcriptional similarities and differences between pigs and humans. Methods Two pigs and two healthy humans’ PBMCs were sorted for 10 × genomics single-cell sequence. We generated integrated human-pig scRNA-seq data from human and pig PBMCs and defined the overall gene expression landscape of pig peripheral blood immune cell subpopulations by updating the set of human-porcine homologous genes. The subsets of immune cells were detected by flow cytometry. Results There were significantly less T cells, NK cells and monocytes but more B cells in pig peripheral blood than those in human peripheral blood. High oxidative phosphorylation, HIF-1, glycolysis, and lysosome-related gene expressions in pig CD14+ monocytes were observed, whereas pig CD14+ monocytes exhibited lower levels of cytokine receptors and JAK-STAT-related genes. Pig activated CD4+T cells decreased cell adhesion and inflammation, while enriched for migration and activation processes. Porcine GNLY+CD8+T cells reduced cytotoxicity and increased proliferation compared with human GNLY+CD8+T cells. Pig CD2+CD8+γδT cells were functionally homologous to human CD2+CD4+ γδT cells. Pig CD2−CD8−γδT cells expressed genes with quiescent and precursor characteristics, while CD2−CD8+γδT cells expressed migration and memory-related molecules. Pig CD24+ and CD5+B cells are associated with inflammatory responses. Conclusion Our research with integrated scRNA-seq assays identified the different distribution of pig immune cell subpopulations and the different transcriptional profiles of human and pig immune cells. This study enables a deeper understanding of the development and function of porcine immune cells.

Effects of Soaking and Cyclic Wet-dry Actions on Shear Strength of an Artificially Mixed Sand

Jun-Jie Wang,Yong-Feng Zhou,Xiao Wu,Hui-Ping Zhang 대한토목학회 2019 KSCE JOURNAL OF CIVIL ENGINEERING Vol.23 No.4

This study focuses on the effects of soaking action and wetting-drying cycles on the shear strength of a sandstone-mudstone mixture. This mixture is constantly used as a filler in earth structures along bank of harbor or in a large reservoir. Two-type direct shear tests in laboratory, Soaking Direct Shear Test (SDST) and Wetting-Drying Direct Shear Test (WDDST), were carried out. The experimental data indicate that the shear strength is reduced by the soaking action and wetting-drying cycles. While the period of soaking time (t) increased from 24 to 392 hours, the values of initial angle of shearing resistance (φ0) and reducing angle of shearing resistance (φd) reduced from 45.17° to 40.26° and from 19.68° to 12.28°, respectively, along logarithmic curves. With increment of the number of wetting-drying cycles (N) from 1 to 30, the values of φ0 and φd reduced from 40.99° to 38.84° and from 8.76° to 7.58°, respectively, along logarithmic curves. During the soaking action or wetting-drying cycles, the inevitably lessening of the stiffness of soil particle would happen, and hence the shear strength of mixture is decreased. With increment of t or N value, the rates of effects isinstantly reducing.

Food Science/Microbiology : Isolation and Identification of Bacillus amyloliquefaciens BY01 with High Productivity of Menaquinone for Cheonggukjang Production

( Wei Jie Wu ),( Byung Yong Ahn ) 한국응용생명화학회(구 한국농화학회) 2011 Applied Biological Chemistry (Appl Biol Chem) Vol.54 No.5

To develop a cheonggukjang with high content of menaquinone (MK), bacterial strains were isolated from good quality cheonggukjang, and MK productivities of isolated strains were determined by high-performance liquid chromatography. After sensory evaluation and MK determination, a potential probiotics, BY01, with acceptable sensory quality and high productivity of MK was isolated. Fermentation under aerobic condition produced more MK than that obtained under anaerobic condition, and the synthesized MK mainly remained in the form of endocellular deposit. To identify species of strain BY01, biochemical tests and gyrase B gene (gyrB) sequence analysis were carried out, and strain BY01 was identified as Bacillus amyloliquefaciens. The content of MK in cheonggukjang fermented with B. amyloliquefaciens BY01 reached 7.54 μg/g, 2-fold higher than that of commercial cheonggukjang products. This is the first report on the isolation of B. amyloliquefaciens as a superior MK producer in cheonggukjang fermentation.