A Critical Survey of Seaweed Diversity of Chilika Lake, India

Sahoo, Debasish,Sahu, Nivedita,Sahoo, Dinabandhu The Korean Society of Phycology 2003 ALGAE Vol.18 No.1

PCR-SSCP of Serum Lysozyme Gene (Exon-III) in Riverine Buffalo and Its Association with Lysozyme Activity and Somatic Cell Count

Sahoo, Nihar Ranjan,Kumar, Pushpendra,Bhushan, Bharat,Bhattacharya, T.K.,Sharma, Arjava,Dayal, Sanker,Pankaj, Prabhat Kumar,Sahoo, Monalisa Asian Australasian Association of Animal Productio 2010 Animal Bioscience Vol.23 No.8

Serum lysozyme gene is one of the important genes influencing the immune system as its product can cause lysis of bacterial cell wall by cleaving the peptidoglycan layer. The present investigation on the serum lysozyme gene of Indian riverine buffalo was undertaken with the objectives to identify and characterize single nucleotide polymorphic patterns by PCR-SSCP method as well as to study the effect of different genotypes on serum lysozyme activity and somatic cell count. A total of 280 animals comprising four different famous bubaline breeds (Murrah, Mehsana, Surti and Bhadawari), spread over six different farms across the country were used for this study. A 276 bp (partial intron 2, complete exon 3 and partial intron 3) fragment of lysozyme gene was screened for polymorphism using the SSCP technique. Four genotypes namely AA, AB, BC and AC were observed, out of which BC genotype was found to be the most frequent. Among these three alleles, C allele (0.38) was most prevalent in these populations. Various SSCP allelic variants were cloned for sequencing and sequences were submitted to NCBI Genbank. From the alignment of the nucleotide sequences of various allelic variants, it was found that there were differences in 12 positions among the alleles, out of which maximum variation (at 8 places) was found in the intronic region. The allele A was closer to allele-C than allele-B. Allele B was phylogenetically equidistant from both of the other alleles. Mean lysozyme activity determined in serum samples of different animals of Murrah buffalo was $27.35{\pm}2.42\;{\mu}g$ per ml of serum, whereas the mean somatic cell count was $1.25{\pm}0.13{\times}10^5$ cells per ml of milk. The SSCP pattern-wise effects of various genotypes on lysozyme activity and SCC were analyzed. Although the mean values were apparently different in various genotypes, these differences were statistically non-significant. It can be concluded that the riverine buffaloes are sufficiently polymorphic with respect to serum lysozyme gene. The absence of AA genotype in Bhadawari breed of buffalo can be considered as a marker for breed characterization. The difference of four nucleotides in exon-3 indicates high selection pressure on the gene.

Preparation of ultra-porous graphene oxide using a glucose-mediated hydrothermal method for efficient removal of fluoride ions from water: kinetics, isotherms and co-existing ions studies

Sahoo Shraban Kumar,Sahoo Jitendra Kumar,Biswal Susanta Kumar,Gagan Kumar Panigrahi 한국탄소학회 2024 Carbon Letters Vol.34 No.1

Porous graphene oxide (P-GO) was successfully synthesized by using a simple glucose mediated hydrothermal method form prepared graphene oxide (GO). Then the P-GO was characterized by X-ray Powder Diffraction (XRD), Fourier-Transform Infrared (FITR), Raman, Brunauer–Emmett–Teller (BET), Field Emission Scanning Electron Microscopy (FESEM) and Transmission Electron Microscopy (TEM) analysis to determine the crystallinity, surface functionality, surface defect, surface area and porous nature of the material. For the comparative properties studies with P-GO, the synthesised GO was also characterised using the aforementioned analytical techniques. The formation of macroporous 2D sheet-like structure of P-GO with pore size diameters of 0.2–0.5 µm was confirmed by FESEM and TEM images. The surface area of P-GO was found to be 1272 m2/g which is much higher compare to GO (i.e., 172 m2/g) because of porous structure. P-GO was used for the adsorptive removal of F− ions from water using batch adsorption method. The highest adsorption occurs in the pH range of 5–7 with maximum adsorption capacity of 1272 mg/g. The experimental data revealed that the adsorption process obeys Langmuir monolayer isotherm model. The kinetic analysis revealed that the adsorption procedure is extremely rapid and mainly fit to the Pseudo-second-order (PSO) model. The effect of co-existing ions on fluoride adsorption capacity by P-GO decreases in the following order: PO43− > CO32− > SO42− > HCO3− > NO3− > Cl−. The mechanism of adsorption of fluoride onto the P-GO surface includes electrostatic interactions and hydrogen bonding.

Thermal frequency analysis of FG sandwich structure under variable temperature loading

Brundaban Sahoo,Kulmani Mehar,Bamadev Sahoo,Nitin Sharma,Subrata Kumar Panda 국제구조공학회 2021 Structural Engineering and Mechanics, An Int'l Jou Vol.77 No.1

The thermal eigenvalue responses of the graded sandwich shell structure are evaluated numerically under the variable thermal loadings considering the temperature-dependent properties. The polynomial type rule-based sandwich panel model is derived using higher-order type kinematics considering the shear deformation in the framework of the equivalent single-layer theory. The frequency values are computed through an own home-made computer code (MATLAB environment) prepared using the finite element type higher-order formulation. The sandwich face-sheets and the metal core are discretized via isoparametric quadrilateral Lagrangian element. The model convergence is checked by solving the similar type published numerical examples in the open domain and extended for the comparison of natural frequencies to have the final confirmation of the model accuracy. Also, the influence of each variable structural parameter, i.e. the curvature ratios, core-face thickness ratios, end-support conditions, the power-law indices and sandwich types (symmetrical and unsymmetrical) on the thermal frequencies of FG sandwich curved shell panel model. The solutions are helping to bring out the necessary influence of one or more parameters on the frequencies. The effects of individual and the combined parameters as well as the temperature profiles (uniform, linear and nonlinear) are examined through several numerical examples, which affect the structural strength/stiffness values. The present study may help in designing the future graded structures which are under the influence of the variable temperature loading.

Numerical buckling temperature prediction of graded sandwich panel using higher order shear deformation theory under variable temperature loading

Brundaban Sahoo,Bamadev Sahoo,Nitin Sharma,Kulmani Mehar,Subrata Kumar Panda 국제구조공학회 2020 Smart Structures and Systems, An International Jou Vol.26 No.5

The finite element solutions of thermal buckling load values of the graded sandwich curved shell structure are reported in this research using a higher-order kinematic model including the shear deformation effect. The numerical buckling temperature has been computed using an in-house specialized code (MATLAB environment) prepared in the framework of the current mathematical formulation. In addition, the mathematical model includes the excess structural distortion under the influence of elevated environment via Green-Lagrange nonlinear strain. The corresponding eigenvalue equation has been solved to predict the critical buckling temperature of the graded sandwich structure. The numerical stability and the accuracy of the current solution have been confirmed by comparing with the available published results. Thereafter, the model is extended to bring out the influences of structural parameters i.e. the curvature ratio, core-face thickness ratio, support conditions, power-law indices and sandwich types on the thermal buckling behavior of graded sandwich curved shell panels.

Problems and solutions to conduct of thesis of postgraduate medical students during the COVID-19 pandemic: an insight into the students perspective

Alok Kumar Sahoo,Nitasha Mishra,Manisha Sahoo,Premangshu Ghoshal 한국의학교육학회 2023 Korean journal of medical education Vol.35 No.1

Purpose: The coronavirus disease 2019 (COVID-19) pandemic has adversely impacted medical education worldwide. However, its impact on the postgraduate medical thesis and dissertation work is still not evaluated. Through this study, we planned to find out the problems brought by the pandemic and likely alternatives and possible solutions to thrust the academic competence of postgraduate students. Methods: After obtaining institutional ethics committee approval, we sent a 13-item questionnaire to postgraduate medical students in India via various social media online platforms. Data on the impact of the COVID-19 pandemic on thesis work and alternatives/solutions to improve the research competence were collected on a Likert scale and analyzed. Results: We received a total of 398 responses out of which 377 entries were included for final analysis. The majority of participants (88%) reportedly had an adverse impact on the thesis work and out of 25% of the participants who recently submitted their around 45% had to do so without achieving the estimated sample size. The 6-month departmental review for thesis progress was seen in merely 28% of participants. Possible alternatives suggested were the maintenance of log books, task-based assessment of research methodology, departmental audits, and systematic reviews. Solutions suggested for improving the research competence of students were a compulsory research methodology curriculum, a biostatistics department in each institution, permission to conduct thesis work beyond submission time, exclusive time for research work, and financial incentives. Conclusion: Modification in the research aspect of the current postgraduate medical education is the need of the hour and the pandemic has enlightened us regarding the current weaknesses.

Virtual Screening for Potential Inhibitors of NS3 Protein of Zika Virus

Sahoo, Maheswata,Jena, Lingaraja,Daf, Sangeeta,Kumar, Satish Korea Genome Organization 2016 Genomics & informatics Vol.14 No.3

Zika virus (ZIKV) is a mosquito borne pathogen, belongs to Flaviviridae family having a positive-sense single-stranded RNA genome, currently known for causing large epidemics in Brazil. Its infection can cause microcephaly, a serious birth defect during pregnancy. The recent outbreak of ZIKV in February 2016 in Brazil realized it as a major health risk, demands an enhanced surveillance and a need to develop novel drugs against ZIKV. Amodiaquine, prochlorperazine, quinacrine, and berberine are few promising drugs approved by Food and Drug Administration against dengue virus which also belong to Flaviviridae family. In this study, we performed molecular docking analysis of these drugs against nonstructural 3 (NS3) protein of ZIKV. The protease activity of NS3 is necessary for viral replication and its prohibition could be considered as a strategy for treatment of ZIKV infection. Amongst these four drugs, berberine has shown highest binding affinity of -5.8 kcal/mol and it is binding around the active site region of the receptor. Based on the properties of berberine, more similar compounds were retrieved from ZINC database and a structure-based virtual screening was carried out by AutoDock Vina in PyRx 0.8. Best 10 novel drug-like compounds were identified and amongst them ZINC53047591 (2-(benzylsulfanyl)-3-cyclohexyl-3H-spiro[benzo[h]quinazoline-5,1'-cyclopentan]-4(6H)-one) was found to interact with NS3 protein with binding energy of -7.1 kcal/mol and formed H-bonds with Ser135 and Asn152 amino acid residues. Observations made in this study may extend an assuring platform for developing anti-viral competitive inhibitors against ZIKV infection.

Carbon nanoflake growth from carbon nanotubes by hot filament chemical vapor deposition

Sahoo, S.C.,Mohapatra, D.R.,Lee, H.J.,Jejurikar, S.M.,Kim, I.,Lee, S.C.,Park, J.K.,Baik, Y.J.,Lee, W.S. Pergamon Press ; Elsevier Science Ltd 2014 Carbon Vol.67 No.-

We report the growth of carbon nanoflakes (CNFs) on Si substrate by the hot filament chemical vapor deposition without the substrate bias or the catalyst. CNFs were grown using the single wall carbon nanotubes and the multiwall carbon nanotubes as the nucleation center, in the Ar-rich CH<SUB>4</SUB>-H<SUB>2</SUB>-Ar precursor gas mixture with 1% CH<SUB>4</SUB>, at the chamber pressure and the substrate temperature of 7.5Torr and 840<SUP>o</SUP>C, respectively. In the H<SUB>2</SUB>-rich condition, CNF synthesis failed due to severe etch-removal of carbon nanotubes (CNTs) while it was successful at the optimized Ar-rich condition. Other forms of carbon such as nano-diamond or mesoporous carbon failed to serve as the nucleation centers for the CNF growth. We proposed a mechanism of the CNF synthesis from the CNTs, which involved the initial unzipping of CNTs by atomic hydrogen and subsequent nucleation and growth of CNFs from the unzipped portion of the graphene layers.

Identification of Suitable Natural Inhibitor against Influenza A (H1N1) Neuraminidase Protein by Molecular Docking

Sahoo, Maheswata,Jena, Lingaraja,Rath, Surya Narayan,Kumar, Satish Korea Genome Organization 2016 Genomics & informatics Vol.14 No.3

The influenza A (H1N1) virus, also known as swine flu is a leading cause of morbidity and mortality since 2009. There is a need to explore novel anti-viral drugs for overcoming the epidemics. Traditionally, different plant extracts of garlic, ginger, kalmegh, ajwain, green tea, turmeric, menthe, tulsi, etc. have been used as hopeful source of prevention and treatment of human influenza. The H1N1 virus contains an important glycoprotein, known as neuraminidase (NA) that is mainly responsible for initiation of viral infection and is essential for the life cycle of H1N1. It is responsible for sialic acid cleavage from glycans of the infected cell. We employed amino acid sequence of H1N1 NA to predict the tertiary structure using Phyre2 server and validated using ProCheck, ProSA, ProQ, and ERRAT server. Further, the modelled structure was docked with thirteen natural compounds of plant origin using AutoDock4.2. Most of the natural compounds showed effective inhibitory activity against H1N1 NA in binding condition. This study also highlights interaction of these natural inhibitors with amino residues of NA protein. Furthermore, among 13 natural compounds, theaflavin, found in green tea, was observed to inhibit H1N1 NA proteins strongly supported by lowest docking energy. Hence, it may be of interest to consider theaflavin for further in vitro and in vivo evaluation.

Modafinil Dependence and Hypersexuality: A Case Report and Review of the Evidence

Sahoo Swapnajeet,Subodh BN,Gupta Gourav 대한정신약물학회 2016 CLINICAL PSYCHOPHARMACOLOGY AND NEUROSCIENCE Vol.14 No.4

Apart from sleep wake disorders, nowadays, modafinil is being prescribed for several psychiatric disorders including depression. Despite being reported as to be having very low abuse potential, cases of modafinil dependence had come to the limelight. In this case report, we describe a 35 year old man with bipolar affective disorder while in remission who developed modafinil dependence and later on, had hypersexuality when he increased the dose of modafinil from 400 to 1,000 mg/day. Existing literature suggests that modafinil when taken above prescribed doses can cause many side effects ranging from nausea, vomiting to psychotic exacerbation and mania. However, hypersexuality as a side effect of modafinil overuse is not commonly seen. The exact pathophysiological mechanism of modafinil induced hypersexuality is not clear. Clinicians should be aware of possibility of modafinil leading to dependence and this rare significant side effect of modafinil.