The effects of codon usage on the formation of secondary structures of nucleocapsid protein of peste des petits ruminants virus

Xiao‑xia Ma,Yi‑ning Wang,Xiao‑an Cao,Xue‑rui Li,Yong‑sheng Liu,Jian‑hua Zhou,Xue‑peng Cai 한국유전학회 2018 Genes & Genomics Vol.40 No.9

The nucleocapsid (N) protein of peste des petits ruminants virus (PPRV) with a conserved amino acid usage pattern plays an important role in viral replication. The primary objective of this study was to estimate roles of synonymous codon usages of PPRV N gene and tRNA abundances of host in the formation of secondary structure of N protein. The potential effects of synonymous codon usages of N gene and tRNA abundances of host on shaping different folding units (α-helix, β-strand and the coil) in N protein were estimated, based on the information about the modeling secondary structure of PPRV N protein. The synonymous codon usage bias was found in different folding units in PPRV N protein. To better understand the role of translation speed caused by variant tRNA abundances in shaping the specific folding unit in N protein, we modeled the changing trends of tRNA abundance at the transition boundaries from one folding unit to another folding unit (β-strand → coil, coil → β-strand, α-helix → coil, coil → α-helix). The obvious fluctuations of tRNA abundance were identified at the two transition boundaries (β-strand → coil and coil → β-strand) in PPRV N protein. Our findings suggested that viral synonymous codon usage bias and cellular tRNA abundance variation might have potential effects on the formation of secondary structure of PPRV N protein.

LncRNA A2M-AS1 lessens the injury of cardiomyocytes caused by hypoxia and reoxygenation via regulating IL1R2

Xue‑Lian Song,Fei‑Fei Zhang,Wen‑Jing Wang,Xin‑Ning Li,Yi Dang,Ying‑Xiao Li,Qian Yang,Mei‑Jing Shi,Xiao‑Yong Qi 한국유전학회 2020 Genes & Genomics Vol.42 No.12

Background: Myocardial ischemia and reperfusion injury (MI/RI) is a complex pathophysiological process, which can lead to severe myocardial injury. The long noncoding RNA alpha-2-macroglobulin antisense RNA 1 (A2M-AS1) has been revealed to be abnormally expressed in MI, However, its function in MI and the potential mechanism are still unclear. Objective: To evaluate the functional role of A2M-AS1 in hypoxia/reoxygenation (H/R)-induced neonatal cardiomyocytes and its potential molecular mechanism. Methods: Dataset GSE66360 was obtained from GEO database for analyzing the RNA expression of A2M-AS1 and interleukin 1 receptor type 2 (IL1R2). KEGG pathway enrichment analysis of the genes that co-expressed with A2M-AS1 was performed. Human neonatal cardiomyocytes were subjected to H/R to construct in vitro models. QRT-PCR and Western blot were adopted to test the levels of mRNA and protein. The viability and apoptosis of cardiomyocytes were tested by CCK-8 and flow cytometry assays, respectively. Results: The expression of A2M-AS1 was notably downregulated in H/R-treated cardiomyocytes. Overexpression of A2M-AS1 can notably enhance the cell viability of H/R-damaged cardiomyocytes, whereas knockdown of A2M-AS1 showed the opposite outcomes. Besides, a negative correlation was showed between A2M-AS1 and IL1R2 expression. In H/R-treated cardiomyocytes, overexpression of IL1R2 weakened the promoting proliferation and anti-apoptosis effects caused by overexpressing A2M-AS1, however, IL1R2-knockdown abolished the anti-proliferation and pro-apoptosis effects caused by silencing A2M-AS1. Conclusion: This study demonstrates the potential regulatory role of A2M-AS1/ IL1R2 axis in cardiomyocytes suffered from H/R, and provides insight into the protection of MI/RI.

Treatment of fever with traditional Chinese medicine according to Zheng on cancer patients (based on case reports)

Peng Cao,Lan-Ying Liu,Xue-Ting Cai,Xiao-Ning Wang,Jie-Ge Huo,Zhong-Ying Zhou 셀메드 세포교정의약학회 2012 셀메드 (CellMed) Vol.2 No.2

Fever in cancer patients is often due to the following causes: evil qi and toxity stagnancy, disorders of qi and blood, deficiencies of zang and fu organs, and the disorder of yin and yang. The treatments given to cancer patients with a fever are according to five: (a) Excessive inner heat and toxicants: remove heat and the toxicant, induce purgation. We use Cheng-Qi-Tang plus Qing-Wen-Bai-Du-Yin. (b) Tangle of damp and heat, and qi stagnancy: remove damp and heat, smooth the qi channel. We use Gan-Lu-Xiao-Du-Dan or San-Ren-Tang. (c) Obvious blood and heat stagnancy: remove heat and blood stasis. We use Xue-Fu-Zhu-Yu-Tang. (d) Deficiency of spleen qi, inner heat caused by a yin deficiency: nourish spleen qi and yin to remove the inner heat. We use Bu-Zhong-Yi-Qi-Tang or Xiao-Jian-Zhong-Tang. (e) Prominent yin deficiency and hectic fever: replenish yin and remove inner heat. We use Qing-Hao-Bie-Jia-Tang or Chai-Qian-Mei-Lian-San. The pathogenesis of fever in cancer patients is complicated. We can see both deficiency and excess in one differentiation. Therefore, we must make sure of it, then we can get the most effective treatment.

Degrees of Freedom for Complex MIMO Multiple-Way Relay Channel

Xiao Chen,Yan Zhu,Xinxing Yin,Fangbiao Li,Zhi Xue 보안공학연구지원센터 2014 International Journal of Multimedia and Ubiquitous Vol.9 No.11

The amount of diversity or the number of degrees of freedom (DOF) can be increased by multiple antennas in wireless communication systems. In this paper, we study the DOF of multiple-input multiple-output (MIMO) multiple-way relay channel. There are two groups of source nodes and several one relay node which are equipped with multiple antennas in this kind of channel. Each source node in one group exchanges independent message with the source node in the other group via the relay node. We first show the upper bound on the total DOF for this channel. Then we extend it to the complex MIMO multiple-way relay channel and present the corresponding upped bound.

Cinnamaldehyde Derivatives Inhibit Coxsackievirus B3-Induced Viral Myocarditis

( Xiao-qiang Li ),( Xiao-xiao Liu ),( Xue-ying Wang ),( Yan-hua Xie ),( Qian Yang ),( Xin-xin Liu ),( Yuan-yuan Ding ),( Wei Cao ),( Si-wang Wang ) 한국응용약물학회 2017 Biomolecules & Therapeutics(구 응용약물학회지) Vol.25 No.3

The chemical property of cinnamaldehyde is unstable in vivo, although early experiments have shown its obvious therapeutic effects on viral myocarditis (VMC). To overcome this problem, we used cinnamaldehyde as a leading compound to synthesize derivatives. Five derivatives of cinnamaldehyde were synthesized: 4-methylcinnamaldehyde (1), 4-chlorocinnamaldehyde (2), 4-methoxycinnamaldehyde (3), α-bromo-4-methylcinnamaldehyde (4), and α-bromo-4-chlorocinnamaldehyde (5). Neonatal rat cardiomyocytes and HeLa cells infected by coxsackievirus B3 (CVB3) were used to evaluate their antiviral and cytotoxic effects. In vivo BALB/c mice were infected with CVB3 for establishing VMC models. Among the derivatives, compound 4 and 5 inhibited the CVB3 in HeLa cells with the half-maximal inhibitory concentrations values of 11.38 ± 2.22 μM and 2.12 ± 0.37 μM, respectively. The 50% toxic concentrations of compound 4 and 5-treated cells were 39-fold and 87-fold higher than in the cinnamaldehyde group. Compound 4 and 5 effectively reduced the viral titers and cardiac pathological changes in a dose-dependent manner. In addition, compound 4 and 5 significantly inhibited the secretion, mRNA and protein expressions of inflammatory cytokines TNF-α, IL-1β and IL-6 in CVB3-infected cardiomyocytes, indicating that brominated cinnamaldehyde not only improved the anti-vital activities for VMC, but also had potent anti-inflammatory effects in cardiomyocytes induced by CVB3.

Synthesis of coryphantha elephantidens-like SnO2 nanospheres and their gas sensing properties

Xiao-xue Lian,Yan Li,Junwu Zhu,Yun-ling Zou,Xiulin Liu,Dongmin An,Qiong Wang 한국물리학회 2019 Current Applied Physics Vol.19 No.7

In this work, coryphantha elephantidens-like SnO2 with porous structures were prepared successfully by a simple hydrothermal route, through adjusting the temperature of hydrotherm. Its morphology was characterized by Xray diffraction (XRD), scanning electron microscopy (SEM) and Brunauer–Emmett–Teller (BET). Compared to the regular nanospheres, the coryphantha elephantidens-like SnO2 nanospheres had obviously higher gas-sensing response, owing to the special structure with large specific surface area (161.16m2 g−1). It surprised us that the coryphantha elephantidens-like SnO2 sensor could easily distinguish between ethanol and acetone, whose chemical property were similar. Moreover, it also exhibited wide measurement range, fast response speed (less than 10 s) and good repeatability at a low temperature (180 °C) to ethanol. The desirable specific surface area and pore volume were conducive to molecules adsorption and diffusion, which were believed to be the major cause of the improvement of gas sensing performance.

Efficient Measurement Method for Spatiotemporal Compressive Data Gathering in Wireless Sensor Networks

( Xiao Xue ),( Song Xiao ),( Lei Quan ) 한국인터넷정보학회 2018 KSII Transactions on Internet and Information Syst Vol.12 No.4

By means of compressive sensing (CS) technique, this paper considers the collection of sensor data with spatiotemporal correlations in wireless sensor networks (WSNs). In energy-constrained WSNs, one-dimensional CS methods need a lot of data transmissions since they are less applicable in fully exploiting the spatiotemporal correlations, while the Kronecker CS (KCS) methods suffer performance degradations when the signal dimension increases. In this paper, an appropriate sensing matrix as well as an efficient sensing method is proposed to further reduce the data transmissions without the loss of the recovery performance. Different matrices for the temporal signal of each sensor node are separately designed. The corresponding energy-efficient data gathering method is presented, which only transmitting a subset of sensor readings to recover data of the entire WSN. Theoretical analysis indicates that the sensing structure could have the relatively small mutual coherence according to the selection of matrix. Compared with the existing spatiotemporal CS (CS-ST) method, the simulation results show that the proposed efficient measurement method could reduce data transmissions by about 25% with the similar recovery performance. In addition, compared with the conventional KCS method, for 95% successful recovery, the proposed sensing structure could improve the recovery performance by about 20%.

Species Classification and Quality Assessment of Chaihu (Radix Bupleuri) Based on High-Performance Liquid Chromatographic Fingerprint and Combined Chemometrics Methods

Xiao-Jie Li,Jie Hu,Zhen-Yu Li,Xue-Mei Qin,Li-Zeng Zhang,Xiao-Qing Guo 대한약학회 2011 Archives of Pharmacal Research Vol.34 No.6

A high-performance liquid chromatographic (HPLC) method was established to analyze 36 Chaihu (Radix Bupleuri) samples collected from three species (Bupleurum chinense DC., B. scorzonerifolium Willd. and B. smithii Wolff.). Addition of trifluoroacetic acid into the mobile phase resulted in fingerprint chromatograms with stable baselines. There were thirty-two characteristic peaks in the standard fingerprint of B. chinense DC. Different recognition pattern methods, including similarity analysis (SA), hierarchical cluster analysis (HCA), principal component analysis (PCA) and partial least squares-discrimination analysis (PLS-DA) were utilized to analyze the 36 samples based on the contents of chemical constituents. Consistent results from SA, HCA and PCA analysis illustrated the rationalisation for why B. smithii Wolff. was not quoted in the Chinese Pharmacopoeia and classified samples were in agreement with their species. PLS-DA loading plots showed the chemical markers which had the most influences on the separation among different species. However, SA, HCA and PCA could not differentiate between wild and cultivated B. chinense DC. as well as between samples from different provinces. HPLC fingerprint in combination with chemometric techniques provided a very flexible and reliable method for homogeneity evaluation and quality assessment of traditional Chinese medicine.

Association of adjuvant radiotherapy with long-term overall and recurrence-free survival following hepatectomy for hepatocellular carcinoma: A multicenter propensity-matched study

Xiao-Xue GOU,Hong-Yun SHI,Chao LI,Zheng-Liang CHEN,Wei OUYANG,Li-Yang SUN,Timothy M. PAWLIK,Wan Yee LAU,Feng SHEN,Jun XUE,Tian YANG 한국간담췌외과학회 2022 Annals of hepato-biliary-pancreatic surgery Vol.26 No.-

Native and non-native listeners` perception of foreign accent for duration-manipulated English L2 speech

( Xiao Jiao Xue ),( Joo Kyeong Lee ) 한국외국어대학교 언어연구소 2015 언어와 언어학 Vol.0 No.66

This work investigates if non-native Chinese and Korean listeners agree with natives in the evaluation of foreign accent for Chinese talkers’ English L2 speech, but unlike many previous studies, speech rate was manipulated to expand and compress in English statement and yes-no question stimuli. Results showed that Chinese listeners’ ratings were significantly similar with those of native listeners in the assessment of English statement stimuli regardless of the listeners’ L2 proficiency. Korean listeners did not, however, show such a pattern. When judging yes-no question stimuli, Chinese listeners statistically agreed with natives, yet high listeners only for Chinese high talkers and low listeners only for Chinese low talkers. Korean listeners did not, on the other hand, show a significant agreement with natives. This was interpreted as stating that the interlanguage shared by the same L1 talkers and listeners might facilitate speech comprehension and ultimately enable the listeners to be sensible enough to the temporal changes of stimuli. Concerning non-native listeners’ L1 background and L2 proficiency, the Pearson correlation analysis showed that non-natives’ L1 background, rather than L2 proficiency, contributed to inducing similar foreign accent ratings to native listeners. However, L2 proficiency seemed to play a role in a particular sentence type where the sound features were closely associated with proficiency in the interlanguage shared by the same L1 non-natives.