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Misato Hirano,Junko Shibato,Randeep Rakwal,Nobuo Kouyama,Yoko Katayama,Motohiro Hayashi,Yoshinori Masuo 한국분자세포생물학회 2009 Molecules and cells Vol.27 No.2
Gamma knife surgery (GKS) is used for the treatment of various human brain disorders. However, the biological effects of gamma ray irradiation on both the target area, and the surrounding tissues are not well studied. The effects of gamma ray exposure to both targeted and untargeted regions were therefore evaluated by monitoring gene expression changes in the unilateral irradiated (60 Gy) and contralateral un-irradiated striata in the rat. Striata of irradiated and control brains were dissected 16 hours post-irradiation for analysis using a whole genome 44K DNA oligo microarray approach. The results revealed 230 induced and 144 repressed genes in the irradiated striatum and 432 induced and 239 repressed genes in the unirradiated striatum. Out of these altered genes 39 of the induced and 16 of the reduced genes were common to both irradiated and un-irradiated tissue. Results of semiquantitative, confirmatory RT-PCR and western blot analyses suggested that γ-irradiation caused cellular damage, including oxidative stress, in the striata of both hemispheres of the brains of treated animals.
Cho, Kyoungwon,Shibato, Junko,Kubo, Akihiro,Kohno, Yoshihisa,Satoh, Kouji,Kikuchi, Shoshi,Agrawal, Ganesh Kumar,Sarkar, Abhijit,Rakwal, Randeep Kluwer Academic Publishers 2013 Biotechnology letters. Vol.35 No.4
<P>The 'ozone (O3)-responsive transcriptome' behavior in the panicles and grains of rice plant was studied individually through high-throughput oligo-DNA microarray technique. O3 differentially and separately regulated 620 and 130 genes in the panicles and grains. Among the O3-responsive genes, 176 and 444 genes were up- and down-regulated in panicle compared to 24 and 106 genes in grain, respectively. Further mapping revealed that the majority of differentially expressed genes were mainly involved in signaling, hormonal, cell wall, transcription, proteolysis, and defense events. Many previously unknown O3-responsive novel genes were identified. Inventory of 745 O3-responsive genes and their mapping will expand our knowledge on novel regulatory processes in both panicles and grains of rice; and, serve as a resource towards the designing of rice crops for future high-O3world.</P>
Comparative analysis of seed transcriptomes of ambient ozone-fumigated 2 different rice cultivars
Cho, Kyoungwon,Shibato, Junko,Kubo, Akihiro,Kohno, Yoshihisa,Satoh, Kouji,Kikuchi, Shoshi,Sarkar, Abhijit,Agrawal, Ganesh Kumar,Rakwal, Randeep Informa UK (Taylor Francis) 2013 Plant signaling & behavior Vol.8 No.11
장성국,조경원,Junko Shibato,Oksoo Han,Hitoshi Iwahashi,Shigeru Tamogami,Sajad Majeed Zargar,Akihiro Kubo,Yoshinori Masuo,Ganesh Kumar Agrawal,Randeep Rakwal 한국식물학회 2009 Journal of Plant Biology Vol.52 No.3
The 12-oxo-phytodienoic acid reductase (OPR) is a key enzyme in jasmonic acid (JA) biosynthesis. Previously, we reported the presence of 13 OPR isogenes (OsOPR1-13) in rice. OsOPRs phylogenetically belong to two subgroups, OPRI and OPRII. OsOPR13 is assigned to the second subgroup, which is involved in JA biosynthesis, while the others are found in the first subgroup. Here, we systematically investigated transcript levels of OsOPRs in various tissues and against diverse environmental stresses. Each gene was differentially involved in flower maturation, showing a tissue-specific response. OsOPR1, OsOPR2, and OsOPR13 were also active in responses to wounding, a fungal elicitor (chitosan), salt, UV-C irradiation, H2O2, and ozone exposure. In the case of JA-responsive OsOPRs (OsOPR1, OsOPR2, OsOPR6, OsOPR10, and OsOPR13), co-application of JA and SA suppressed jasmonate-induced transcript levels and delayed OsOPR10 expression. We also investigated the biochemical properties of OsOPR1 and found a flavin cofactor with optimal activity at pH7.8 and values of 0.048 min−1 kcat and 8.33 μM Km for (9S,13R)- 12-oxo-phytodienoic acid. Here, we discuss the role of OsOPRs in stress responses and floral development.
Rakwal, Randeep,Kimura, Shinzo,Shibato, Junko,Nojima, Kumie,Kim, Yeonki,Nahm, Baekhie,Jwa, Namsoo,Endo, Satoru,Tanaka, Kenichi,Iwahashi, Hitoshi Korean Society for Molecular Biology 2008 Molecules and cells Vol.25 No.2
The carbon-ion beam (CIB) generated by the heavy-ion medical accelerator in Chiba (HIMAC) was targeted to 7-day-old rice. Physiological parameters such as growth, and gene expression profiles were examined immediately after CIB irradiation. Dose-dependent growth suppression was seen three days post-irradiation (PI), and all the irradiated plants died by 15 days PI. Microarray (Agilent rice 22K) analysis of the plants immediately after irradiation (iai) revealed effects on gene expression at 270 Gy; 353 genes were up-regulated and 87 down-regulated. Exactly the same set of genes was affected at 90 Gy. Among the highly induced genes were genes involved in information storage and processing, cellular processes and signaling, and metabolism. RT-PCR analysis confirmed the microarray data.
Randeep Rakwal,Shinzo Kimura,Junko Shibato,Kumie Nojima,Yeon-Ki Kim,남백희,Nam-Soo Jwa,Satoru Endo,Kenichi Tanaka,Hitoshi Iwahashi 한국분자세포생물학회 2008 Molecules and cells Vol.25 No.2
The carbon-ion beam (CIB) generated by the heavy-ion medical accelerator in Chiba (HIMAC) was targeted to 7-day-old rice. Physiological parameters such as growth, and gene expression profiles were examined immediately after CIB irradiation. Dose-dependent growth suppression was seen three days post-irradiation (PI), and all the irradiated plants died by 15 days PI. Microarray (Agilent rice 22K) analysis of the plants immediately after irradiation (iai) revealed effects on gene expression at 270 Gy; 353 genes were up-regulated and 87 down-regulated. Exactly the same set of genes was affected at 90 Gy. Among the highly induced genes were genes involved in information storage and processing, cellular processes and signaling, and metabolism. RT-PCR analysis confirmed the microarray data.