An On-line Adaptive Glucose Feeding System Incorporating Patterns Recognition for Glucose Concentration Control in Glutamate Fermentations

Jian Ding,Luqiang Jia,Enock Mpofu,Minjie Gao,Xidong Ren 한국생물공학회 2016 Biotechnology and Bioprocess Engineering Vol.21 No.6

In glutamate fermentation, intermittent feeding is the most widely used glucose feed strategy. This feeding strategy causes severe fluctuations of glucose concentration and osmotic pressure in fermentation broth, which deteriorates the viability of the cell and reduces glutamate production in turn. In order to maintain glucose concentration at stable and constant levels, an on-line prediction and feedback control system based an empiric mass balance model was developed. However, the control system did not work properly and sometimes glucose concentration could even decline to 0 level (glucose exhaustion), as the model parameter varies in different runs. As a result, a novel model-based adaptive feedback control system incoporating with an artificial neural network (ANN) based pattern reconition unit for on-line diagnosizing the fault of glucose exhaustion was proposed and applied for glutamate fermentation. This adaptive control system could accurately detect glucose exhaustion when it occurs, and then immediately updates the control parameter based on some pre-defined rule. With the proposed control system, glucose was automatically fed, and its concentration could be maintained at desired levels constantly. As a result, glutamate concentration was 17 ~ 30% higher than that of the traditional fermentations using the intermittent glucose feed strategy.

CircularRNA_104670 plays a critical role in intervertebral disc degeneration by functioning as a ceRNA

Jian Son,Hong-Li Wang,Ke-Han Song,Zhi-Wen Ding,Hai-Lian Wang,Xiao-Sheng Ma,Fei-Zhou Lu,Xin-Lei Xia,Ying-Wei Wang,Fei-Zou,Jian-Yuan Jiang 생화학분자생물학회 2018 Experimental and molecular medicine Vol.50 No.-

This study was carried out to explore the roles of circular RNAs (circRNAs) in nucleus pulposus (NP) tissues in intervertebral disc degeneration (IDD). Differentially expressed circRNAs in IDD and normal NP tissues were identified based on the results of microarray analysis. Bioinformatics techniques were employed to predict the direct interactions of selected circRNAs, microRNAs (miR), and mRNAs. CircRNA_104670 was selected as the target circRNA due to its large multiplier expression in IDD tissues. After luciferase reporter and EGFP/RFP reporter assays, we confirmed that circRNA_104670 directly bound to miR-17-3p, while MMP-2 was the direct target of miR-17-3p. The receiver-operating characteristic (ROC) curve showed that circRNA_104670 and miR-17-3p had good diagnostic significance for IDD (AUC circRNA_104670 = 0.96; AUC miRNA-17-3p = 0.91). A significant correlation was detected between the Pfirrmann grade and expression of circRNA_104670 (r = 0.63; p = 0.00) and miR-17-3p (r = −0.62; p = 0.00). Flow-cytometric analysis and the MTT assay showed that interfering with circRNA_104670 using small interfering RNA (siRNA) inhibited NP cell apoptosis (p < 0.01), and this inhibition was reduced by interfering with miR-17-3p. Interfering with circRNA_104670 suppressed MMP-2 expression and increased extracellular matrix (ECM) formation, which were also reduced by interfering with miR-17-3p. Finally, an MRI evaluation showed that circRNA_104670 inhibition mice had a lower IDD grade compared with control mice (p < 0.01), whereas circRNA_104670 and miRNA-17-3p inhibition mice had a higher IDD grade compared with circRNA_104670 inhibition mice (p < 0.05). CircRNA_104670 is highly expressed in the NP tissues of IDD and acts as a ceRNA during NP degradation.

Microstructure evolution and effect on deuterium retention in oxide dispersion strengthened tungsten during He⁺ irradiation

Ding, Xiao-Yu,Xu, Qiu,Zhu, Xiao-yong,Luo, Lai-Ma,Huang, Jian-Jun,Yu, Bin,Gao, Xiang,Li, Jian-Gang,Wu, Yu-Cheng Korean Nuclear Society 2020 Nuclear Engineering and Technology Vol.52 No.12

Oxide dispersion-strengthened materials W-1wt%Pr₂O₃ and W-1wt%La₂O₃ were synthesized by wet chemical method and spark plasma sintering. The field emission scanning electron microscopy (FE-SEM) analysis, XRD and Vickers microhardness measurements were conducted to characterize the samples. The irradiations were carried out with a 5 keV helium ion beam to fluences up to 5.0 × 10²¹ ions/m² under 600 ℃ using the low-energy ion irradiation system. Transmission electron microscopy (TEM) study was performed to investigate the microstructural evolution in W-1wt%Pr₂O₃ and W-1wt%La₂O₃. At 1.0 × 10²⁰ He⁺/m², the average loops size of the W-1wt%Pr₂O₃ was 4.3 nm, much lower than W-1wt% La₂O₃ of 8.5 nm. However, helium bubbles were not observed throughout in both doped W materials. The effects of pre-irradiation with 1.0 × 10²¹ He⁺/m² on trapping of injected deuterium in doped W was studied by thermal desorption spectrometry (TDS) technique using quadrupole mass spectrometer. Compared with the samples without He⁺ pre-irradiation, deuterium (D) retention of doped W materials increased after He⁺ irradiation, whose retention was unsaturated at the damage level of 1.0 × 10²²D₂⁺/m². The present results implied that irradiation effect of He⁺ ions must be taken into account to evaluate the deuterium retention in fusion material applications.

Relationship among porcine lncRNA TCONS_00010987, miR-323, and leptin receptor based on dual luciferase reporter gene assays and expression patterns

Ding, Yueyun,Qian, Li,Wang, Li,Wu, Chaodong,Li, DengTao,Zhang, Xiaodong,Yin, Zongjun,Wang, Yuanlang,Zhang, Wei,Wu, Xudong,Ding, Jian,Yang, Min,Zhang, Liang,Shang, Jinnan,Wang, Chonglong,Gao, Yafei Asian Australasian Association of Animal Productio 2020 Animal Bioscience Vol.33 No.2

Objective: Considering the physiological and clinical importance of leptin receptor (LEPR) in regulating obesity and the fact that porcine LEPR expression is not known to be controlled by lncRNAs and miRNAs, we aim to characterize this gene as a potential target of SSC-miR-323 and the lncRNA TCONS_00010987. Methods: Bioinformatics analyses revealed that lncRNA TCONS_00010987 and LEPR have SSC-miR-323-binding sites and that LEPR might be a target of lncRNA TCONS_00010987 based on cis prediction. Wild-type and mutant TCONS_00010987-target sequence fragments and wild-type and mutant LEPR 3'-UTR fragments were generated and cloned into pmiRRB-REPORT^TM-Control vectors to construct respective recombinant plasmids. HEK293T cells were co-transfected with the SSC-miR-323 mimics or a negative control with constructs harboring the corresponding binding sites and relative luciferase activities were determined. Tissue expression patterns of lncRNA TCONS_00010987, SSC-miR-323, and LEPR in Anqing six-end-white (AQ, the obese breed) and Large White (LW, the lean breed) pigs were detected by real-time quantitative polymerase chain reaction; backfat expression of LEPR protein was detected by western blotting. Results: Target gene fragments were successfully cloned, and the four recombinant vectors were constructed. Compared to the negative control, SSC-miR-323 mimics significantly inhibited luciferase activity from the wild-type TCONS_00010987-target sequence and wild-type LEPR-3'-UTR (p<0.01 for both) but not from the mutant TCONS_00010987-target sequence and mutant LEPR-3'-UTR (p>0.05 for both). Backfat expression levels of TCONS_00010987 and LEPR in AQ pigs were significantly higher than those in LW pigs (p<0.01), whereas levels of SSC-miR-323 in AQ pigs were significantly lower than those in LW pigs (p<0.05). LEPR protein levels in the backfat tissues of AQ pigs were markedly higher than those in LW pigs (p<0.01). Conclusion: LEPR is a potential target of SSC-miR-323, and TCONS_00010987 might act as a sponge for SSC-miR-323 to regulate LEPR expression.

Accuracy modeling, analysis and radical error distribution of 3-RPR planar parallel mechanism

Jian Ding,Changlong Ye,Suyang Yu,Jianguang Li,Jinguo Liu,Guangbo Hao 대한기계학회 2022 JOURNAL OF MECHANICAL SCIENCE AND TECHNOLOGY Vol.36 No.11

Output accuracy performance is directly determined by geometric errors and working poses of a mechanism. Accuracy sensitivity as geometric error transmission coefficient, closely relates to pose configuration and geometric parameters. This research focuses on accuracy of a 3-RPR planar parallel mechanism: firstly, established 3 models in an analytic form, to describe relationship between output errors and geometric ones, then they are mutually verified statistically. Secondly, the anisotropy and periodic fluctuation of position errors, independently contributed by each category of geometric errors, are illustrated; and mirror symmetric trajectories and poses generating output errors with mirror symmetry, are also revealed by numerical simulation. Finally, the radical accuracy model in an analytic form, was established through variance and covariance analysis on output errors. We concluded that the radical error of the movable platform in central symmetric poses, follows Rayleigh distribution pattern. Through statistical comparison with Monte Carlo simulation, the radical error model was demonstrated, that provided a reference for accuracy design for other planar parallel mechanism.

Excessive mechanical strain accelerates intervertebral disc degeneration by disrupting intrinsic circadian rhythm

Ding Sheng-Long,Zhang Tai-Wei,Zhang Qi-Chen,Ding Wang,Li Ze-Fang,Han Guan-Jie,Bai Jin-Song,Li Xi-Lei,Dong Jian,Wang Hui-Ren,Jiang Li-Bo 생화학분자생물학회 2021 Experimental and molecular medicine Vol.53 No.-

Night shift workers with disordered rhythmic mechanical loading are more prone to intervertebral disc degeneration (IDD). Our results showed that circadian rhythm (CR) was dampened in degenerated and aged NP cells. Long-term environmental CR disruption promoted IDD in rats. Excessive mechanical strain disrupted the CR and inhibited the expression of core clock proteins. The inhibitory effect of mechanical loading on the expression of extracellular matrix genes could be reversed by BMAL1 overexpression in NP cells. The Rho/ROCK pathway was demonstrated to mediate the effect of mechanical stimulation on CR. Prolonged mechanical loading for 12 months affected intrinsic CR genes and induced IDD in a model of upright posture in a normal environment. Unexpectedly, mechanical loading further accelerated the IDD in an Light-Dark (LD) cycle-disrupted environment. These results indicated that intrinsic CR disruption might be a mechanism involved in overloading-induced IDD and a potential drug target for night shift workers.

An Advanced Thin Film PV Technology and Application

Jian Ding 한국신재생에너지학회 2019 AFORE Vol.2019 No.11

A Human Case of Lumbosacral Canal Sparganosis in China

Jian-Feng Fan,Sheng Huang,Jing Li,Ren-Jun Peng,He Huang,Xi-Ping Ding,Li-Ping Jiang,Jian Xi 대한기생충학열대의학회 2021 The Korean Journal of Parasitology Vol.59 No.6

Comparative transcriptome analysis of lipid biosynthesis in seeds and non-seed tissues of sea buckthorn

Jian Ding,Li Wang,Chengjiang Ruan 한국유전학회 2017 Genes & Genomics Vol.39 No.9

Sea buckthorn (Hippophae L.) is a woody crop with an unusual ability to thrive in very dry, nutrient-poor habitats. Seeds and berry pulp are rich in bioactive compounds with powerful medicinal properties, and are being used worldwide to an increasing extent. However, genomic information is still lacking for this crop, which limits the possibilities of raise the oil quality and yield with advanced breeding program. In this study, (1) sea buckthorn de novo transcriptome libraries for seeds, pulp, leaf, stem and root tissues were first constructed simultaneously, and 62,166 unigenes were assembled. Sixty-six differential expression genes (e-value cutoff <1 × 10−30) were found to be involved in lipid biosynthesis pathway, (2) based on the comparative transcriptome data, we first revealed the differentially expressed genes of oil biosynthesis and accumulation in seeds and berry pulp, and the high unigene expression of source gene ‘GPD1’ (3.61) contributed to synthesis more G3P of TAG precursor in pulp, and the high expression of sink genes ‘DGAT1 and DGAT2’ (14.57 and 12.57, respectively) accelerated high TAG accumulation in pulp, compared to their expressions in seeds (0, 1.24 and 6.85, respectively). The oil content in pulp (36.90%) was also higher than that in seed (14.15%), (3) qRT-PCR verification results showed the expressions of GPD1, DGAT1 and DGAT2 genes (1.46, 0.93 and 2.13 fold change, respectively) in pulp were also higher than those in seeds (0.47, 0.21 and 1.02 fold change, respectively). Our results suggest that the high coordinated expression of source ‘GPD1’ and sink ‘DGAT1 and DGAT2’ genes resulted in strong oil biosynthesis and accumulation in the pulp with highoil pulp, compared to its seed with low-oil seeds. These transcriptome data provide genomic information for identification of genetic regulation system for sea buckthorn, especially understanding lipid biosynthesis mechanism in seeds and pulp. The detection of these three source and sink genes of lipid biosynthesis provided scientific basis for improving low oil contents in seeds and pulp of sea buckthorn berries.

역사학 : 송초조광윤잠저구신적권력지쟁여이부제(宋初趙匡胤潛邸舊臣的權力之爭與二府製)

정건군 ( Jian Jun Ding ),고굉의 ( Hong Yi Gu ) 경희대학교 인문학연구소 2007 인문학연구 Vol.11 No.-