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Sangshetty Balkunde,Hung-Linh Lee,Dong-Min Kim,Ju-Won Kang,Hyun-Sook Lee,Sang-Nag Ahn 한국육종학회 2014 한국육종학회 심포지엄 Vol.2014 No.07
Using a series of BC8F4 nearly isogenic lines(IL-20) derived from a cross between Hwaseongbyeo, as the recurrent parent, and wild rice Oryza minuta (IRGC Acc. No. 101144) as the donor parent we constructed a high-resolution physical map for the days to heading (dth9)-QTL. dth9 QTL was mapped to the long arm of chromosome 9 across a 34.74-kb region containing 8 predicted genes. Heading date of Japonica rice variety Hwaseongbyeo was one week earlier than a near-isogenic line (NILs) IL-20 under natural field (NF) conditions and 3-4 days under short-day (SD) conditions implying that the dth9-QTL is involved in photoperiod sensitivity in rice. Of the 8 predicted genes three were protein-coding genes in dth9-QTL region. According to RiceXpro published data, micro-array analysis of different leaf developmental stages of Nipponbare showed a higher level of LOC_Os09g36700 mRNA expression during panicle initiation stage. This data further supported our prediction that dth9 locus is responsible for delayed heading in IL-20. Previous studies showed that RNase T2 family proteins are involved in photoperiod sensitivity. Based on these findings we sequenced two candidate genes, which encoded for RNase T2 family proteins. Interestingly, we found the existence of a missense mutation in LOC_Os09g36700 gene suggesting that dth9-QTL might control difference in days to heading between Hwaseongbyeo and IL-20. The QTL for days to heading had not been detected in previous QTL studies between Oryza cultivars, indicating the existence of potentially novel allele from O. mimuta.
Ju-Won Kang,Dong-Min Kim,Sangshetty,Hyun-Sook Lee,Sang-Nag Ahn 한국육종학회 2014 한국육종학회 심포지엄 Vol.2014 No.07
Drought stress is one of the major stress affecting growth and productivity in rice. Drought tolerance is a complex trait governed by quantitative trait loci (QTLs) making it difficult to understand mechanisms underlying it. We generated a set of 55 introgression lines via a backcrossing using Milyang23, a Korean Tongil-type rice variety as the recurrent parent and O. glaberrima (IRGC Acc. No. 103544), an exotic collection from Mali, West Africa as donor parent. 141 SSR markers were used to genotype 55 introgression lines. The 55 introgression lines with the Milyang23 were evaluated for physiological traits such as Fresh shoot weight (FSW), Fresh root weight (FRW) and Dry shoot weight (DSW) under control and 20% PEG-treated condition. Three lines (IL9, 12, 55) showing significant difference with Milyang23 were selected. The genetic background of the three lines were similar to Milyang23 and it has four, four and two O. glaberrima homozygous segments, respectively. IL9 performed better than Milyang23 in all traits measured in the 20% PEG-treated condition. IL9 possessed four O. glaberrima introgressions on chromosomes 1, 2, 6 and 7. IL12 performed better than Milyang23 in FSW and FRW. IL12 contains four O. glaberrima introgressions on chromosomes 3 and 6. And IL55 contains two O. glaberrima introgressions on chromosomes 2 and 6. O. glaberrima segment delimited by markers OSR19-RM225 at chromosomes 6 was commonly present in these three lines. This region corresponds to the QTL region for drought tolerance reported by other previous studies. A set of introgression lines are being developed containing only few chromosomal segments from O. glaberrima in the Milyang23 background. These would be useful not only in developing drought tolerant lines in the breeding program but also in fine-mapping the genes/QTLs for drought resistance.
Ji‐Min Oh,Sangshetty Balkunde,Paul Yang,Dong‐Beom Yoon,안상낙 한국유전학회 2011 Genes & Genomics Vol.33 No.3
In our previous study, we reported the grain weight (GW)QTL, tgw11 in isogenic lines derived from a cross between Oryza sativa ssp. Japonica cv. Hwaseong and O. grandiglumis. The O. grandiglumis allele at tgw11 decreased GW in the Hwaseong background. To fine-map tgw11, one F5 plant homozygous for the O. grandiglumis DNA in the target region on chromosome 11 was selected from F_4 line,CR1242 segregating for tgw11 and crossed with Hwaseong to produce secondary F_2 and F_3 populations. QTL analysis using 760 F_2 plants confirmed the existence of tgw11 with an R^2 value of 15.0%. This QTL explained 32.2% of the phenotypic variance for GW in 91 F_3 lines. Substitution mapping with 65 F_3 lines with informative recombination breakpoints in the target region was carried out to narrow down the position of the tgw11. The result indicated that tgw11 was located in the 900-kb interval between two SSR markers, RM224 and RM27358. QTLs for grain width and grain thickness were also located in the same interval suggesting that a single gene is involved in controlling these three traits. Analysis of F3 lines indicated that the variation in TGW is associated with variation in grain shape, specifically grain thickness and grain width. Genetic analysis indicated that the O. grandiglumis allele for small seed was dominant over the Hwaseong allele. SSR markers tightly linked to the GW QTL would be useful in marker-assisted selection for variation in GW in breeding program.
Microsatellite를 이용한 자포니카 벼의 다양성 분석
나소(Luo Xiao),상세티(Sangshetty Balkunde),양바오로(Paul Yang),이현숙(Hyun-Sook Lee),안상낙(Sang-Nag Ahn) 충남대학교 농업과학연구소 2012 농업과학연구 Vol.39 No.1
The study was conducted to evaluate the genetic similarity among commercial japonica rice varieties in Korea and China and to develop markers to differentiate between japonica cultivars developed in Korea and China. The genetic similarity and cluster of 38 accessions were analyzed using 47 SSR(simple sequence repeat) markers. The number of alleles by 47 SSR markers ranged from 2 to 9 with an average of 3.6. A total of 169 alleles were detected among these tested rice varieties. The PIC value varied from 0.05 to 0.79 with an average of 0.44. The Chinese japonica cultivars could be differentiated from the japonica cultivars in Korea by combining 2 SSR markers, RM223 and RM266. Cluster analysis showed that 38 tested varieties could be distinguished into japonica and indica based on the genetic distance.
밀양23호/Oryza glaberrima 조합 이입계통의 내건성 특성 평가
강주원(Ju-Won Kang),김동민(Dong-Min Kim),상세티(Sangshetty),이현숙(Hyun-Sook Lee),안상낙(Sang-Nag Ahn) 한국육종학회 2015 한국육종학회지 Vol.47 No.1
We generated 55 introgression lines via backcrosses using Milyang23 as the recurrent parent and Oryza glaberrima as the donor. 141 SSR markers were used to genotype 55 introgression lines. The 55 introgression lines with Milyang23 were evaluated for physiological traits; fresh shoot weight (FSW), fresh root weight (FRW) and dry shoot weight (DSW) under the control and 30% PEG-treated condition. Three lines showing significant difference with Milyang23 were selected for further analysis. Three lines had four, four and two O. glaberrima homozygous segments, respectively. IL9 performed better than Milyang23 in all traits measured in the 30% PEG-treated condition. IL9 possessed four O. glaberrima introgressions on chromosomes 1, 2, 6 and 7. IL12 performed better than Milyang23 in FSW and FRW. IL55 contains two O. glaberrima introgressions on chromosomes 2 and 6. Three lines shared the O. glaberrima segment delimited by markers RM133-RM225 at chromosomes 6. This region corresponds to the QTL region for drought tolerance reported by other previous studies. Although IL9 and IL12 showed improved drought tolerance at the seedling and vegetative stage, they performed poor under the drought stress at the reproductive stage implying that the level of drought tolerance differs according to the growth stage in rice. IL55 had significantly higher no. of the total grain than Milyang 23. This result seems to indicate that IL55 will be a good resource for drought tolerance breeding. The population would be useful in developing drought tolerant lines in the breeding program.
Darandale, Sunil N.,Sangshetti, Jaiprakash N.,Shinde, Devanand B. Korean Chemical Society 2012 대한화학회지 Vol.56 No.3
A simple, convenient and practical green synthetic protocol for sodium bisulfite catalyzed multicomponent reaction of ethyl acetoacetate, hydrazine hydrate, malononitrile, and various aldehydes for the synthesis of 6-amino-4-phenyl-3-methyl-2,4-ihydropyrano[2,3-c]pyrazole-5-carbonitriles using ultrasound irradiations in solvent free condition. This method provides the advantage of operational simplicity, shorter reaction time and excellent yields making the protocol environment friendly and economically lucrative.