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Stenesen, D.,Suh, J.,Seo, J.,Yu, K.,Lee, K.S.,Kim, J.S.,Min, K.J.,Graff, Jonathan M. Cell Press 2013 Cell metabolism Vol.17 No.1
A common thread among conserved life span regulators lies within intertwined roles in metabolism and energy homeostasis. We show that heterozygous mutations of AMP biosynthetic enzymes extend Drosophila life span. The life span benefit of these mutations depends upon increased AMP:ATP and ADP:ATP ratios and adenosine monophosphate-activated protein kinase (AMPK). Transgenic expression of AMPK in adult fat body or adult muscle, key metabolic tissues, extended life span, while AMPK RNAi reduced life span. Supplementing adenine, a substrate for AMP biosynthesis, to the diet of long-lived AMP biosynthesis mutants reversed life span extension. Remarkably, this simple change in diet also blocked the prolongevity effects of dietary restriction. These data establish AMP biosynthesis, adenosine nucleotide ratios, and AMPK as determinants of adult life span; provide a mechanistic link between cellular anabolism and energy sensing pathways; and indicate that dietary adenine manipulations might alter metabolism to influence animal life span.
Lee, Won Dong,Lee, Hyun,Fong, Jonathan J.,Oh, Seung-Yoon,Park, Myung Soo,Quan, Ying,Jung, Paul E.,Lim, Young Woon The Korean Society of Mycology 2014 Mycobiology Vol.42 No.2
Basidiomycetous macrofungi play important roles in maintaining forest ecosystems via carbon cycling and the mobilization of nitrogen and phosphorus. To understand the impact of human activity on macrofungi, an ongoing project at the Korea National Arboretum is focused on surveying the macrofungi in unexploited areas. Mt. Oseo was targeted in this survey because the number of visitors to this destination has been steadily increasing, and management and conservation plans for this destination are urgently required. Through 5 field surveys of Mt. Oseo from April to October 2012, 116 specimens of basidiomycetous macrofungi were collected and classified. The specimens were identified to the species level by analyzing their morphological characteristics and their DNA sequence data. A total of 80 species belonging to 57 genera and 25 families were identified. To the best of our knowledge, this is the first study to identify five of these species-Artomyces microsporus, Hymenopellis raphanipes, Pholiota abietis, Phylloporus brunneiceps, and Sirobasidium magnum-in Korea.
Different Calcium Binding Affinity of Calmodulin Isoforms and Its Effect on Target Enzyme Activation
Lee, Sang Hyoung,Jonathan Davis,Seo, Hae Young,Heo, Won Do,Lee, Kyoung Joo,J.David Johnson,Cho, Moo Je Gyeongsang National University, Chinju, Korea 1996 Plant molecular biology and biotechnology research Vol.1996 No.
Lee, Hyun,Park, Myung Soo,Jung, Paul Eunil,Fong, Jonathan J.,Oh, Seung-Yoon,Verbeken, Annemieke,Lim, Young Woon Magnolia Press 2015 Phytotaxa Vol.205 No.3
<P>A new species belonging to Lactarius subg. Plinthogalus was discovered during a long-term project on the diversity of Korean Lactarius. This species is proposed here as Lactarius cucurbitoides. The status of L. cucurbitoides as a new species is supported by molecular data and morphological features. Phylogenetic analysis based on internal transcribed spacer (ITS) sequences shows that L. cucurbitoides is closely related to L. subplinthogalus, L. friabilis, and L. oomsisiensis, with pairwise distances of 2.8-4.3%. Morphological characters of L. cucurbitoides that distinguish it from these closely related species are a pale yellow to pale orange colored pileus and non-discoloration of white latex. The new species is described and illustrated in the present paper.</P>
Labonne, Jonathan D. J.,Lee, Kang-Han,Iwase, Shigeki,Kong, Il-Keun,Diamond, Michael P.,Layman, Lawrence C.,Kim, Cheol-Hee,Kim, Hyung-Goo Springer-Verlag 2016 HUMAN GENETICS Vol.135 No.7
<P>Microdeletion syndromes are frequent causes of neuropsychiatric disorders leading to intellectual disability as well as autistic features accompanied by epilepsy and craniofacial anomalies. From comparative deletion mapping of the smallest microdeletion to date at 12q24.31, found in a patient with overlapping clinical features of 12q24.31 microdeletion syndrome, we narrowed the putative critical region to 445 kb containing seven genes, one microRNA, and one non-coding RNA. Zebrafish in situ hybridization and comprehensive transcript analysis of annotated genes in the panels of human organ and brain suggest that these are all candidates for neurological phenotypes excluding the gene HPD. This is also corroborated by synteny analysis revealing the conservation of the order of these six candidate genes between humans and zebrafish. Among them, we propose histone demethylase KDM2B and histone methyltransferase SETD1B as the two most plausible candidate genes involved in intellectual disability, autism, epilepsy, and craniofacial anomalies. These two chromatin modifiers located approximately 224 kb apart were both commonly deleted in six patients, while two additional patients had either KDM2B or SETD1B deleted. The four additional candidate genes (ORAI1, MORN3, TMEM120B, RHOF), a microRNA MIR548AQ, and a non-coding RNA LINC01089 are localized between KDM2B and SETD1B. The 12q24.31 microdeletion syndrome with syndromic intellectual disability extends the growing list of microdeletion syndromes and underscores the causative roles of chromatin modifiers in cognitive and craniofacial development.</P>
Skelton, Jonathan M.,Burton, Lee A.,Jackson, Adam J.,Oba, Fumiyasu,Parker, Stephen C.,Walsh, Aron Royal Society of Chemistry 2017 Physical chemistry chemical physics Vol.19 No.19
<▼1><P>First-principles lattice-dynamics calculations are used to model and compare the vibrational spectra and thermal transport of four bulk tin-sulphide materials.</P></▼1><▼2><P>We present an in-depth first-principles study of the lattice dynamics of the tin sulphides SnS<SUB>2</SUB>, <I>Pnma</I> and π-cubic SnS and Sn<SUB>2</SUB>S<SUB>3</SUB>. An analysis of the harmonic phonon dispersion and vibrational density of states reveals phonon bandgaps between low- and high-frequency modes consisting of Sn and S motion, respectively, and evidences a bond-strength hierarchy in the low-dimensional SnS<SUB>2</SUB>, <I>Pnma</I> SnS and Sn<SUB>2</SUB>S<SUB>3</SUB> crystals. We model and perform a complete characterisation of the infrared and Raman spectra, including temperature-dependent anharmonic linewidths calculated using many-body perturbation theory. We illustrate how vibrational spectroscopy could be used to identify and characterise phase impurities in tin sulphide samples. The spectral linewidths are used to model the thermal transport, and the calculations indicate that the low-dimensional Sn<SUB>2</SUB>S<SUB>3</SUB> has a very low lattice thermal conductivity, potentially giving it superior performance to SnS as a candidate thermoelectric material.</P></▼2>
Coote, Jonathan P.,Kim, Jin-Seong,Lee, Byeongdu,Han, Junghun,Kim, Bumjoon J.,Stein, Gila E. American Chemical Society 2018 Macromolecules Vol.51 No.22
<P>Conjugated block copolymers (BCPs) can self-assemble into highly ordered nanostructures in a melt state. However, when cooled below the melting temperature, crystal growth can disrupt the self-assembled structure and produce a poorly ordered fibrillar texture. We demonstrate that crystallization modes of conjugated BCPs based on poly(3-dodecylthiophene) (P3DDT) and poly(2-vinylpyridine) (P2VP) can be tuned through P3DDT regioregularity (RR), as this attribute controls the melting temperature and crystallization rates of P3DDT. When RR is low (70-80%), crystallization is observed at temperatures near or below the glass transition of P2VP, so crystal growth is largely confined by the glassy cylindrical or lamellar BCP structure. When RR is high (94%), crystallization occurs at 40 K above the glass transition of P2VP, so there is no longer a restriction of glassy domains. Importantly, crystal growth remains confined by the rubbery P2VP lamellae, but breaks through the rubbery P2VP cylinders. This morphology-dependent behavior is attributed to geometric compatibility of P3DDT crystal growth and the self-assembled symmetry. In a lamellar phase, the P3DDT chain orientations at the P3DDT-<I>block</I>-P2VP interface are compatible with crystal growth, and both the alkyl-stacking and π-π growth directions are unrestricted within a lamellar sheet. In a cylindrical phase, the radial orientation of P3DDT chains at the P3DDT-<I>block</I>-P2VP interface is not compatible with crystal growth, and the hexagonal close-packed symmetry only allows for one direction of unrestricted crystal growth. Significantly, these studies demonstrate that tuning RR of polyalkylthiophenes can open up multiple crystallization modes with the same monomer chemistries and block lengths, thereby decoupling the parameters that govern classical BCP self-assembly and crystal growth.</P> [FIG OMISSION]</BR>
Taxonomic Revision of the Genus Lactifluus (Russulales, Basidiomycota) of South Korea
( Hyun Lee ),( Komsit Wissitrassameewong ),( Myung Soo Park ),( Jonathan J. Fong ),( Annemieke Verbeken ),( Changmu Kim ),( Young Woon Lim ) 한국균학회 2021 Mycobiology Vol.49 No.4
Lactifluus (Pers.) Roussel is an ectomycorrhizal genus that was recently recognized to be distinct from the genus Lactarius. To date, 226 Lactifluus species have been reported worldwide. Misidentification of Lactifluus species is common because of intraspecific morphological variation, cryptic diversity, and the limited number of taxonomic keys available. Molecular data are indispensable for species delimitation; a multilocus phylogenetic analysis showed that most Asian Lactifluus species are not conspecific with morphologically similar species present on other continents. In particular, Korea has misused European and North American Lactifluus names. In this study, we evaluated the taxonomy of Lactifluus in Korea using both morphological and multilocus molecular (ITS, nrLSU, rpb1, and rpb2) data. We examined 199 Lactifluus specimens collected between 1980 and 2016, and a total of 24 species across the four Lactifluus subgenera were identified. All Korean species are distinct and clearly separated from European and North American species. Five taxa corresponded to previously described species from Asia and the remaining 19 taxa are confirmed as new species. Herein, we provide keys to the Korean Lactifluus species within their subgenera, molecular phylogenies, a summary of diversity, and detailed description of the new species.