http://chineseinput.net/에서 pinyin(병음)방식으로 중국어를 변환할 수 있습니다.
변환된 중국어를 복사하여 사용하시면 됩니다.
Ramchiary, Nirala,Nguyen, Van Dan,Li, Xiaonan,Hong, Chang Pyo,Dhandapani, Vignesh,Choi, Su Ryun,Yu, Ge,Piao, Zhong Yun,Lim, Yong Pyo Oxford University Press 2011 DNA research Vol.18 No.5
<P>Genic microsatellite markers, also known as functional markers, are preferred over anonymous markers as they reveal the variation in transcribed genes among individuals. In this study, we developed a total of 707 expressed sequence tag-derived simple sequence repeat markers (EST-SSRs) and used for development of a high-density integrated map using four individual mapping populations of <I>B. rapa</I>. This map contains a total of 1426 markers, consisting of 306 EST-SSRs, 153 intron polymorphic markers, 395 bacterial artificial chromosome-derived SSRs (BAC-SSRs), and 572 public SSRs and other markers covering a total distance of 1245.9 cM of the <I>B. rapa</I> genome. Analysis of allelic diversity in 24 <I>B. rapa</I> germplasm using 234 mapped EST-SSR markers showed amplification of 2 alleles by majority of EST-SSRs, although amplification of alleles ranging from 2 to 8 was found. Transferability analysis of 167 EST-SSRs in 35 species belonging to cultivated and wild <I>brassica</I> relatives showed 42.51% (<I>Sysimprium leteum</I>) to 100% (<I>B. carinata, B. juncea</I>, and <I>B. napus</I>) amplification. Our newly developed EST-SSRs and high-density linkage map based on highly transferable genic markers would facilitate the molecular mapping of quantitative trait loci and the positional cloning of specific genes, in addition to marker-assisted selection and comparative genomic studies of <I>B. rapa</I> with other related species.</P>
Development Of SNP Markers And Genome-wide Association Study In Chinese Cabbage
Wenxing Pang,Nirala Ramchiary,Su Ryun Choi,Yong Pyo Lim 한국육종학회 2012 한국육종학회 심포지엄 Vol.2012 No.07
Genome-wide association study (GWAS) is a very powerful method to identify the natural allelic variation present in crop plants causing variation to economically important traits. The recent advances in high throughput genotyping and sequencing technology supplemented greatly to GWAS. Taking this advantage, we selected a total of 382 Chinese cabbage inbred lines for GWAS study. The selected inbred lines are being sequenced using next generation sequencing technology to develop genome wide gene specific single nucleotide polymorphism markers. The morphological and quality traits data were taken from field grown inbred lines. The phenotype and genotype association study will be done with more environmental grown data’s and developed SNP. At the end of this project, gene specific SNP markers will be developed for Chinese cabbage breeding for morphological and quality traits.
Development and linkage mapping of unigene-derived microsatellite markers in <i>Brassica rapa</i> L.
Ge, Yu,Ramchiary, Nirala,Wang, Tao,Liang, Cui,Wang, Na,Wang, Zhe,Choi, Su-Ryun,Lim, Yong Pyo,Piao, Zhong Yun Japanese Society of Breeding 2011 Breeding science Vol.61 No.2
<P><I>Brassica rapa</I> plants are highly important as vegetables, sources of oilseeds and fodder crop. Here, we developed 450 unigene derived microsatellite (UGMS) markers in <I>B. rapa</I> using unigenes downloaded from the National Center for Biotechnology Information database. Of the 450 UGMS primer pairs, 428 (95.1%) produced repeatable and reliable amplifications of expected size in at least one parental line of <I>B. rapa</I>, and 70 UGMS markers gave 72 polymorphic loci between the two contrasting parental lines. Cross-species transferability analysis of these 70 polymorphic UGMS markers in five other cultivated <I>Brassica</I> species showed varying transferability rates ranging from 82.9% in <I>B. nigra</I> to 97.1% in <I>B. juncea</I> and <I>B. napus</I>, and overall 53 UGMS markers amplified targets in all five species. The <I>B. rapa</I> linkage map was constructed using the 72 UGMS polymorphic loci and 154 previously developed SSRs. The newly developed UGMS markers and linkage map in this study would help in future studies to better understand the organization and evolution of <I>Brassica</I> genomes with respect to unigenes, in addition to mapping, tagging and cloning of economically important trait QTL/gene(s) and marker-assisted breeding in <I>Brassica</I> crops.</P>
Jiang, Congcong,Ramchiary, Nirala,Ma, Yongbiao,Jin, Mina,Feng, Ji,Li, Ruiyuan,Wang, Hao,Long, Yan,Choi, Su Ryun,Zhang, Chunyu,Cowling, Wallace A,Park, Beom Seok,Lim, Yong Pyo,Meng, Jinling Springer 2011 TAG. Theoretical and applied genetics. Theoretisch Vol.123 No.6
<P>Brassica napus (AACC genome) is an important oilseed crop that was formed by the fusion of the diploids B. rapa (AA) and B. oleracea (CC). The complete genomic sequence of the Brassica A genome will be available soon from the B. rapa genome sequencing project, but it is not clear how informative the A genome sequence in B. rapa (A(r)) will be for predicting the structure and function of the A subgenome in the allotetraploid Brassica species B. napus (A(n)). In this paper, we report the results of structural and functional comparative mapping between the A subgenomes of B. napus and B. rapa based on genetic maps that were anchored with bacterial artificial chromosomes (BACs)-sequence of B. rapa. We identified segmental conservation that represented by syntenic blocks in over one third of the A genome; meanwhile, comparative mapping of quantitative trait loci for seed quality traits identified a dozen homologous regions with conserved function in the A genome of the two species. However, several genomic rearrangement events, such as inversions, intra- and inter-chromosomal translocations, were also observed, covering totally at least 5% of the A genome, between allotetraploid B. napus and diploid B. rapa. Based on these results, the A genomes of B. rapa and B. napus are mostly functionally conserved, but caution will be necessary in applying the full sequence data from B. rapa to the B. napus as a result of genomic rearrangements in the A genome between the two species.</P>
Yu Ge,Nirala Ramchiary,Tao Wang,Cui Liang,Na Wang,Zhe Wang,최수련,임용표,Zhong Yun Piao 한국원예학회 2011 Horticulture, Environment, and Biotechnology Vol.52 No.5
The inheritance of leaf and heading-related traits in Chinese cabbage (Brassica rapa ssp. pekinensis) are poorly understood since only a handful of studies of these traits are available till date. In this study, QTL mapping was done for seven leaf and heading related traits that includes gross weight, number of non-wrapper leaves, head weight, head length, head width,head length/head width ratio, and the number of head-forming leaves in 139 F3 families derived from a cross between two diverse Chinese cabbage lines, ‘501’ with small head and ‘601’ with large head. A total of 27 QTL spread over the nine linkage groups were identified for seven leaf and head-related traits, many of which showed major effects clustered in A2, A4,A6, and A8. The results provided a better understanding of the genetic factors controlling leaf and head-related traits in Chinese cabbage.
Identification of Potential microRNAs and Their Targets in Brassica rapa L.
Vignesh Dhandapani,Nirala Ramchiary,Parameswari Paul,김준기,최선희,Jeongyeo Lee,Yoonkang Hur,임용표 한국분자세포생물학회 2011 Molecules and cells Vol.32 No.1
MicroRNAs (miRNAs) are recently discovered, noncoding, small regulatory RNA molecules that negatively regulate gene expression. Although many miRNAs are identified and validated in many plant species, they remain largely unknown in Brassica rapa (AA 2n =, 20). B. rapa is an important Brassica crop with wide genetic and morphological diversity resulting in several subspecies that are largely grown for vegetables, oilseeds, and fodder crop production. In this study, we identified 186 miRNAs belonging to 55 families in B. rapa by using comparative genomics. The lengths of identified mature and pre-miRNAs ranged from 18 to 22 and 66 to 305 nucleotides, respectively. Comparison of 4 nucleotides revealed that uracil is the predominant base in the first position of B. rapa miRNA, suggesting that it plays an important role in miRNA- mediated gene regulation. Overall, adenine and guanine were predominant in mature miRNAs, while adenine and uracil were predominant in pre-miRNA sequences. One DNA sequence producing both sense and antisense mature miRNAs belonging to the BrMiR 399 family, which differs by 1 nucleotide at the, 20th position, was identified. In silico analyses, using previously established methods, predicted 66 miRNA target mRNAs for 33 miRNA families. The majority of the target genes were transcription factors that regulate plant growth and development, followed by a few target genes that are involved in fatty acid metabolism, glycolysis, biotic and abiotic stresses, and other cellular processes. Northern blot and qRT-PCR analyses of RNA samples prepared from different B. rapa tissues for 17 miRNA families revealed that miRNAs are differentially expressed both quantitatively and qualita-tively in different tissues of B. rapa.