Association Between Polymorphisms of XRCC1 Arg399Gln and XPD Lys751Gln Genes and Prognosis of Colorectal Cancer in a Chinese Population

Gan, Yi,Li, Xiao-Rong,Chen, Dao-Jin,Wu, Jun-Hui Asian Pacific Journal of Cancer Prevention 2012 Asian Pacific journal of cancer prevention Vol.13 No.11

We conducted this study to detect associations between XRCC1 Arg399Gln and XPD Lys751Gln genotypes and survival of colorectal cancer patients treated with 5-FU/oxalipatin chemotherapy. We included 289 Chinese patients with advanced colorectal cancer, who had received 5-FU/oxalipatin chemotherapy as first-line treatment from January 2005 to January 2007. All patients were followed up till Nov. 2011. Genotyping for XRCC1 Arg399Gln and XPD Lys751Gln polymorphisms was based upon duplex polymerase-chain-reaction with the PCR-RFLP method. In our study, we found the XRCC1 399 Gln/Gln genotype to confer significantly higher rates of response to chemotherapy when compared to the Arg/Arg genotype [OR (95% CI)= 2.56(1.57-2.55)]. patients with the XPD 751 Gln/Gln genotype had significantly higher rates of response to chemotherapy [OR (95% CI)= 1.54(0.87-2.65)] and those with the XRCC1 399 Gln/Gln genotype had a longer average survival time and significantly lower risk of death than did those with the Arg/Arg genotype [HR (95% CI)= 0.66(0.36-0.95)]. Similarly, those carrying the XPD 751Gln/Gln genotype had 0.51-fold the risk of death of those with XPD 751Lys/Lys [HR (95% CI)= 0.51(0.33 -0.94)]. In conclusion, it is suggested that the XRCC1 Arg399Gln and XPD Lys751Gln polymorphisms should be routinely assessed to determine colorectal patients who are more likely to benefit from 5-FU/oxalipatin chemotherapy.

Identification and comparative analysis of piRNAs in ovary and testis of Nile tilapia (Oreochromis niloticus)

Fan Yu,Xi Gan,Yi Zhou,Huan Zhong,Jun Xiao,Jinpeng Yan,Yongju Luo 한국유전학회 2016 Genes & Genomics Vol.38 No.6

It has been shown that piRNA is the largest class of small non-coding RNA in germline cells of animals which plays key roles in transposons regulation and transcriptional activities. In the present study, piRNAs from two small RNA libraries including ovary and testis of Nile tilapia were identified and characterized. By length and k-mer based small RNA prediction algorithm, 279,059 and 583,230 small RNA reads were confirmed as piRNA from ovary and testis, respectively. The identified piRNAs showed evolutionarily conserved characterization, such as uridine bias in the 50 ends. The 142,961 and 296,775 piRNAs from ovary and testis were mapped to the draft assembly of the tilapia genome, respectively. Both ovary and testis piRNAs were enriched from linkage (LG)6 and LG7. Meanwhile, the even distribution of ?strand and -strand suggested the Ping–pong pathway (a double-displacement reaction of ?strand and -strand) hypothesis. These piRNAs were derived from the upstream -2 kb and downstream ?2 kb as well as gene regions which suggested a regulatory function on transcription activities. In gene regions, abundant piRNAs were derived from 50UTR, 30UTR and CDS. Furthermore, we characterized the differentially expressed piRNAs between ovary and testis. In total, 1979 and 2453 piRNAs were significantly higher and lower expressed in ovary compared to that in testis, respectively. Thereinto, the most concentrated up-regulate and down-regulate piRNAs were both from serine/threonine– protein kinase PIM genes of different transcripts. These findings will be helpful to facilitate studies on the piRNAs regulation on genes during gonad development of teleosts.

Genetic Diversity and Classification of Pineapple Germplasm as Revealed by AFLP

Wei Guo Liu,Gan Jun Yi,Ji Wu Zeng,Qiu Ming Zhang 한국원예학회 2006 한국원예학회 기타간행물 Vol.- No.-

Studies on Tissue Culture and Cryopreservation Germplasm of Papaya

JI Wu Zeng,Gan Jun Yi,Qiu Ming Zhang,Bi Rong Zhou,Yuan li Wu,Yonghong Hong Huang 한국원예학회 2006 한국원예학회 기타간행물 Vol.- No.-

Genetic structure of six cattle populations revealed by transcriptomewide SNPs and gene expression

Wei Wang,Huai Wang,Hui Tang,Jia Gan,Changgeng Shi,Qing Lu,Donghui Fang,Jun Yi,Maozhong Fu 한국유전학회 2018 Genes & Genomics Vol.40 No.7

There are abundant cattle breeds/populations in China, and the systematic discovery of genomic variants is essential for performing the marker assisted selection and conservation of genetic resources. In the present study, we employed whole transcriptome sequencing (RNA-Seq) technology for revealing genetic structure among six Chinese cattle populations according to transcriptome-wide SNPs and gene expression. A total of 68,094 variants consisting of 61,754 SNPs and 6340 InDels were detected and widely distributed among all chromosomes, by which the clear patterns of population structures were revealed. We also found the significantly differential density of variant distribution among genes. Additionally, we totally assembled 15,992 genes and detected obvious differences on the expression profiles among populations. In contrast to genomic variants, the measure of gene expression levels failed to support the expected population structure. Here, we provided a global landscape on the differential expression genes among these cattle populations.

Microstructural Effect on Cold Strengthening Mechanism of MP159 Alloys

Luorong Dengzhu,Leiming Fang,Bin Gan,Zhengwei Xiong,Qian Liu,Yi Liu,Jia Yang,Jun Li,Zhipeng Gao 대한금속·재료학회 2024 METALS AND MATERIALS International Vol.30 No.2

Previous investigations on MP159 alloys have largely reported the striking reinforcement performance after cold deformation,which the deformation mechanism was attributed to HCP phases and deformed twins and so on. To data, the microstructuraleffect on cold strengthening mechanism of MP159 alloy was still controversial. In this work, the processes of microstructuralevolution were elaborated through multi-scale structural characterizations. In the initial MP159, the recrystallized grainsand Σ3 twins (<111> 60°) play a dominant role in the microstructures. After cold drawing, the microcosmic dislocationswere significantly increased in the deformed grains. The mesoscopic Σ3 twins were seriously deformed to become thedeformed twins, inducing that the grains were refined. Meanwhile, the grain boundaries were broken and the HAGBs weresubsequently transformed to the LAGBs. The microstructural transition of dislocations → LAGBs ← HAGBs was confirmed. The high stacking fault energy in the deformed twins promoted a high strain energy stored in the MP159, forming the macroscopical<111> //RD texture. The series of microstructural changes induced the significant enhancement of the strengthand hardness. The microstructural effect on cold strengthening mechanism of MP159 alloys was clarified, which would bea great significance to strengthening metallic materials in the current investigations.

Evolutionary and functional implications of 3′ untranslated region length of mRNAs by comprehensive investigation among four taxonomically diverse metazoan species

Wei Wang,Dong‑hui Fang,Jia Gan,Yi Shi,Hui Tang,Huai Wang,Mao‑zhong Fu,Jun Yi 한국유전학회 2019 Genes & Genomics Vol.41 No.7

Background In eukaryotic organisms, it has been well acknowledged that 3′ untranslated regions (3′ UTRs) of mRNA are actively involved in post-transcriptional regulations of gene expression. Although both shortening and lengthening of 3′ UTRs of specific candidate genes were explicitly documented to have functional consequences, landscape of 3′ UTR lengths in relation to evolutionary dynamics and biological meanings remains to be elucidated when large-scale data become available. Objectives The primary objective of this study was to revealed different inter- and intra-species patterns on length distribution of 3′ UTRs in comparison with 5′ UTRs and coding regions. Methods In the present study, we investigated 3′ UTR lengths in a highly curated set of 57,135 mRNA sequences among four well-studied and taxonomically diverse metazoan species (fruit fly, zebrafish, mouse and human). Results The average length ratio of 3′–5′ UTRs considerably increased from fruit fly (twofold) to human (fivefold). Moreover, genes can be characterized by the obviously different patterns of evolutionary change on 3′ UTR lengths. By utilizing the Gene Ontology annotations, genes with differential lengths of 3′ UTRs were suggested to have the divergent functional implications. In human, we further revealed that ubiquitously transcribed genes had higher median lengths of 3′ UTRs than the genes of tissue-restricted expressions. Conclusion We conducted a comprehensive analysis and provided an overview regarding 3′ UTRs biology of mRNAs in animals, whereas the mechanistic explanations of 3′ UTRs length variation in correlation to regulation of gene expression still remain to be further studied.

Cryopreservation of in Vitro Shoot Tips of Banana by Vitrification and Its Regeneration

Li Ming Wu,Ji Wu Zeng,Shu Ang Peng,Gan Jun Yi,Bi Rong Zhou,Yuan Li Wu 한국원예학회 2006 한국원예학회 기타간행물 Vol.- No.-

Glass fiber reinforced graphite/carbon black@PES composite films for high-temperature electric heaters

Yaning Liu,Zhen Xiao,Wenkui Zhang,Hui Huang,Jun Zhang,Yongping Gan,Xinping He,Bingjia Wang,Yi Han,Yang Xia 한국공업화학회 2022 Journal of Industrial and Engineering Chemistry Vol.107 No.-

Carbon based conductive polymer composites as electrothermal materials offers many merits in highflexibility, light weight, low cost, excellent processability, and rapid heating ability, however, the maximumworking temperature is usually lower than 200 C, hampering seriously the medium–high temperatureapplications. Herein, a series of rationally designed glass fiber reinforced graphite/carbonblack@polyethersulfone (G/CB@PES) composites are developed to significantly promote the maximumworking temperature over 300 C. To be specific, the introduced glass fibers acted as rigid skeleton greatlyenhance the mechanical strength of PES polymer matrix, thereby offering robust structural stability inhigh temperature working scenario. Meanwhile, glass fibers not only endow G/CB@PES composite withexcellent flame-retardant ability, but also provide rapid thermal conduction channels to reduce the riskof heat accumulation and overheating. More importantly, glass fiber reinforced G/CB@PES composites aselectrothermal film heaters exhibit superior electric heating performance in terms of fast temperatureresponsiveness, high electric heating efficiency, stable maximum working temperatures, and high electricpower efficiency under the relatively low applied voltages of 3–21 V. This work provides new insights onthe innovative design and facile fabrication of high working temperature electrothermal film heaters inemerging applications.

X-Ray Repair Cross-Complementing Group 1(XRCC1) Genetic Polymorphisms and Thyroid Carcinoma Risk: a Meta-Analysis

Qian, Ke,Liu, Kui-Jie,Xu, Feng,Chen, Xian-Yu,Chen, Gan-Nong,Yi, Wen-Jun,Zhou, En-Xiang,Tang, Zhong-Hua Asian Pacific Journal of Cancer Prevention 2012 Asian Pacific journal of cancer prevention Vol.13 No.12

A number of studies have been conducted to explore the association of XRCC1 polymorphisms with thyroid cancer risk, but the results have been inconsistent. Thus we performed the present meta-analysis to clarify this issue based on all of the evidence available to date. Relevant studies were retrieved by searching PubMed and statistical analysis conducted using Stata software. Nine studies were included in this meta-analysis (1,620 cases and 3,557 controls). There were 6 studies (932 cases and 2,270 controls) of the Arg194Trp polymorphism, 7 studies (1432 cases and 3356 controls) of the Arg280His polymorphism and 9 studies (1,620 cases and 3,557 controls) for the Arg399Gln polymorphism. No association of XRCC1 Arg194Trp, Arg280His and Arg399Gln polymorphism with thyroid cancer risk was observed in the overall analysis. However, subgroup analysis revealed: 1) an elevated risk in aa vs AA analysis (OR=2.03, 95%CI= 1.24-3.31) and recessive genetic model analysis (OR=1.93, 95%CI= 1.20-3.08) in the larger sample size trials for XRCC1 Arg194Trp polymorphism; 2) a decreased thyroid cancer risk on subgroup analysis based on ethnicity in Aa vs AA analysis (OR=0.84, 95%CI= 0.72-0.98) and in a dominant genetic model (OR=0.84, 95%CI= 0.72-0.97) in Caucasian populations for the XRCC1 Arg399Gln polymorphism; 3) a decreased thyroid cancer risk on subgroup analysis based on design type in Aa vs AA analysis (OR=0.72, 95% CI= 0.54-0.97) among the PCC trials for the Arg399Gln polymorphism. Our results suggest that the XRCC1 Arg399Gln polymorphism may be associated with decreased thyroid cancer risk among Caucasians and XRCC1 Arg194Trp may be associated with a tendency for increased thyroid cancer risk in the two larger sample size trials.