Transcriptome analysis of flower colour reveals the correlation between SNP and differential expression genes in Phalaenopsis

Ding Yu,Wang Ma-Yin,Yang Ding-Hai,Hao Dai-Cheng,Li Wei-Shi,Ling Peng,Xie Shang-Qian 한국유전학회 2023 Genes & Genomics Vol.45 No.12

Background Phalaenopsis is an important ornamental plant that has great economic value in the world flower market as one of the most popular flower resources. Objective To investigate the flower colour formation of Phalaenopsis at the transcription level, the genes involved in flower color formation were identified from RNA-seq in this study. Methods In this study, white and purple petals of Phalaenopsis were collected and analyzed to obtained (1) differential expression genes (DEGs) between white and purple flower color and (2) the association between single nucleotide polymorphisms (SNP) mutations and DEGs at the transcriptome level. Results The results indicated that a total of 1,175 DEGs were identified, and 718 and 457 of them were up- and down-regulated genes, respectively. Gene Ontology and pathway enrichment showed that the biosynthesis of the secondary metabolites pathway was key to color formation, and the expression of 12 crucial genes (C4H, CCoAOMT, F3’H, UA3’5’GT, PAL, 4CL, CCR, CAD, CALDH, bglx, SGTase, and E1.11.17) that are involved in the regulation of flower color in Phalaenopsis. Conclusion This study reported the association between the SNP mutations and DEGs for color formation at RNA level, and provides a new insight to further investigate the gene expression and its relationship with genetic variants from RNA-seq data in other species.

Strong convergence of an iterative algorithm for a class of nonlinear set-valued variational inclusions

Xie-Ping Ding,Salahuddin 강원경기수학회 2017 한국수학논문집 Vol.25 No.1

In this communication, we introduce an Ishikawa type iterative algorithm for finding the approximate solutions of a class of nonlinear set valued variational inclusion problems. We also establish a characterization of strong convergence of this iterative techniques.

History and reality of Chinese spices

XIE Ding-Yuan 부산대학교 문화유산보존연구소 2008 한국전통복식연구소 학술심포지움 Vol.- No.-

The Aurora Kinase Inhibitor CYC116 Promotes the Maturation of Cardiomyocytes Derived from Human Pluripotent Stem Cells

Xin Xie,Wanzhi Tu,Chenwen Huang,Ziyang Chen,Xinyue Ren,Bingqing He,Xiaoyan Ding,Yuelei Chen,Xin Xie 한국분자세포생물학회 2022 Molecules and cells Vol.45 No.12

Human pluripotent stem cell-derived cardiomyocytes (hPSC-CMs) have great potential in applications such as regenerative medicine, cardiac disease modeling, and in vitro drug evaluation. However, hPSC-CMs are immature, which limits their applications. During development, the maturation of CMs is accompanied by a decline in their proliferative capacity. This phenomenon suggests that regulating the cell cycle may facilitate the maturation of hPSC-CMs. Aurora kinases are essential kinases that regulate the cell cycle, the role of which is not well studied in hPSC-CM maturation. Here, we demonstrate that CYC116, an inhibitor of Aurora kinases, significantly promotes the maturation of CMs derived from both human embryonic stem cells (H1 and H9) and iPSCs (induced PSCs) (UC013), resulting in increased expression of genes related to cardiomyocyte function, better organization of the sarcomere, increased sarcomere length, increased number of mitochondria, and enhanced physiological function of the cells. In addition, a number of other Aurora kinase inhibitors have also been found to promote the maturation of hPSC-CMs. Our data suggest that blocking aurora kinase activity and regulating cell cycle progression may promote the maturation of hPSC-CMs.

The Aurora Kinase Inhibitor CYC116 Promotes the Maturation of Cardiomyocytes Derived from Human Pluripotent Stem Cells

Xin Xie,Wanzhi Tu,Chenwen Huang,Ziyang Chen,Xinyue Ren,Bingqing He,Xiaoyan Ding,Yuelei Chen,Xin Xie 한국분자세포생물학회 2022 Molecules and cells Vol.45 No.12

Human pluripotent stem cell-derived cardiomyocytes (hPSC-CMs) have great potential in applications such as regenerative medicine, cardiac disease modeling, and in vitro drug evaluation. However, hPSC-CMs are immature, which limits their applications. During development, the maturation of CMs is accompanied by a decline in their proliferative capacity. This phenomenon suggests that regulating the cell cycle may facilitate the maturation of hPSC-CMs. Aurora kinases are essential kinases that regulate the cell cycle, the role of which is not well studied in hPSC-CM maturation. Here, we demonstrate that CYC116, an inhibitor of Aurora kinases, significantly promotes the maturation of CMs derived from both human embryonic stem cells (H1 and H9) and iPSCs (induced PSCs) (UC013), resulting in increased expression of genes related to cardiomyocyte function, better organization of the sarcomere, increased sarcomere length, increased number of mitochondria, and enhanced physiological function of the cells. In addition, a number of other Aurora kinase inhibitors have also been found to promote the maturation of hPSC-CMs. Our data suggest that blocking aurora kinase activity and regulating cell cycle progression may promote the maturation of hPSC-CMs.

Political Ties and Firm Performance in China: Evidence from a Quantile Regression

Wenjing Xie,Keji Liu,Fei Xie,Haoyuan Ding 동아시아연구원 2017 Journal of East Asian Studies Vol.17 No.3

Whether political ties enhance or weaken firm performance has been widely investigated in a number of studies, including some on China. Based on a database of non-financial A-share listed firms from 2004 to 2012, we study the effects of political ties on firm performance within a quantile regression framework. We find that there is a positive relationship between political ties and economic performance, but that it is diminishing with respect to firm performance. Political ties appear particularly important for weaker firms.

Research on self-propulsion simulation of a polar ship in a brash ice channel based on body force model

Xie Chang,Zhou Li,Ding Shifeng,Lu Mingfeng,Zhou Xu 대한조선학회 2023 International Journal of Naval Architecture and Oc Vol.15 No.-

Main engine power prediction is important for polar ships operating in brash ice channels, which is one of the most important concerns of shipowners. Self-propulsion simulation is an efficient method to predict the developed power. At present, such models as the discretized propeller model (DPM) and the body force model (BFM) are used for self-propulsion simulation. However, these models are often limited to open water. There is little research on self-propulsion calculations in ice-infested water. This paper presents the BFM to carry out selfpropulsion simulations in a brash ice channel. Research on simulation strategy for open water performance based on the BFM is carried out. Ship–ice–water interactions are simulated using computational fluid dynamicsdiscrete element method (CFD-DEM) coupling method. Both loaded and ballast conditions are considered in the model-scale self-propulsion simulations. Numerical results based on the BFM are compared with the simulation results based on the DPM, as well as model test results. Ship–propeller–ice interactions and propeller suction effects are also compared with photographs taken at an ice tank test. The results show that the differences of the developed power based on the BFM for both loaded and ballast conditions are 8.94% and 15.25%, respectively. The prediction accuracies of the developed power based on the BFM for both loaded and ballast conditions are 1.56% and 7.01%, respectively; lower than those based on the DPM. However, the computation efficiency based on the BFM is 12 times higher than that based on the DPM. To conclude, the proposed BFM could be used as an effective means to calculate the developed power and to evaluate the trend of hull-line optimization at the development stage.

Lane-Change Collision Avoidance Control for Automated Vehicles with Control Barrier Functions

Ding Yang,Zhong Hong,Qian Yahui,Wang Liangmo,Xie Yuan 한국자동차공학회 2023 International journal of automotive technology Vol.24 No.3

In congested street or highway scenarios, such as lane-change in dynamically changing traffic flow situations, the planning and tracking of trajectories for connected and automated vehicles (CAVs) represent some of the most challenging tasks. As an introduction to automated lane-change in CAVs, this paper presents a control Lyapunov function (CLF) approach that follows an optimal desired trajectory while observing the constraints imposed by the control barrier function (CBF) in order to avoid collision with surrounding vehicles. By combining CLF and CBF within the framework of quadratic programs (QP), it allows the implementation to simultaneously track the control objective (represented by the CLF) and satisfy the constraints of the desired state of the system (represented by the CBF). Therefore, it provides the possibility of tracking simultaneously the path of the unmanned vehicle, within the constraints of the surrounding vehicles as well as the surrounding environment. From simulations and comparison results, the controller presented here can perform collision avoidance well and can be used on a real traffic system, which has the advantage of providing faster and more precise lane-change results than another work.

Relationships Among Character Strengths, Self-efficacy, Social Support, Depression, and Psychological Well-being of Hospital Nurses

Xie Jianfei,Liu Min,Zhong Zhuqing,Zhang Qiuxiang,Zhou Jianda,Wang Lu,Ma Keke,Ding Siqing,Zhang Xiaohong,Sun Qian,Cheng Andy S.K. 한국간호과학회 2020 Asian Nursing Research Vol.14 No.3

Purpose: From the perspective of positive psychology, our study aimed to explore depressive symptoms and psychological well-being among Chinese nurses, as well as analyze the impacts of character strengths, self-efficacy and social support on the mental health of nurses. Methods: A cross-sectional and descriptive design using five self-reported questionnaires was used to investigate a cohort of 4238 nurses during 2018. A structural equation modeling analysis was used to verify a hypothetical model linking character strengths, self-efficacy, social support, depressive symptoms, and psychological well-being. Results: The prevalence of depression among this cohort of Chinese nurses was 58.1%. The mean scores for caring, inquisitiveness, and self-control were 19.93 (SD ¼ 2.82), 15.94 (SD ¼ 3.00), and 16.34 (SD ¼ 2.95), respectively. The hypothesized model was a good fit of the data (c2/df ¼ 1.77, p ¼ .183, root mean square error of approximation ¼ 0.04, goodness of fit index ¼ 1.00, comparative fit index ¼ 1.00, TuckereLewis index ¼ 1.00). Except for the path from self-control to depression, the other hypothetical paths investigated were statistically significant. Conclusion: Character strengths were directly and positively associated with psychological well-being. Inquisitiveness was the strongest direct protective factor for depression. In addition, character strengths indirectly alleviated depression and increased psychological well-being through mediating variables of social support and self-efficacy. This study should alert nurse managers that more attention should be paid to the character strengths and mental health of nurses. This study provides evidence for interventions based on character strengths as a management strategy to support the mental health of nurses.

Therapeutic Benefits of Mesenchymal Stromal Cells in a Rat Model of Hemoglobin-Induced Hypertensive Intracerebral Hemorrhage

Ding, Rui,Lin, Chunnan,Wei, ShanShan,Zhang, Naichong,Tang, Liangang,Lin, Yumao,Chen, Zhijun,Xie, Teng,Chen, XiaoWei,Feng, Yu,Wu, LiHua Korean Society for Molecular and Cellular Biology 2017 Molecules and cells Vol.40 No.2

Previous studies have shown that bone marrow mesenchymal stromal cell (MSC) transplantation significantly improves the recovery of neurological function in a rat model of intracerebral hemorrhage. Potential repair mechanisms involve anti-inflammation, anti-apoptosis and angiogenesis. However, few studies have focused on the effects of MSCs on inducible nitric oxide synthase (iNOS) expression and subsequent peroxynitrite formation after hypertensive intracerebral hemorrhage (HICH). In this study, MSCs were transplanted intracerebrally into rats 6 hours after HICH. The modified neurological severity score and the modified limb placing test were used to measure behavioral outcomes. Blood-brain barrier disruption and neuronal loss were measured by zonula occludens-1 (ZO-1) and neuronal nucleus (NeuN) expression, respectively. Concomitant edema formation was evaluated by H&E staining and brain water content. The effect of MSCs treatment on neuroinflammation was analyzed by immunohistochemical analysis or polymerase chain reaction of CD68, Iba1, iNOS expression and subsequent peroxynitrite formation, and by an enzyme-linked immunosorbent assay of pro-inflammatory factors (IL-$1{\beta}$ and TNF-${\alpha}$). The MSCs-treated HICH group showed better performance on behavioral scores and lower brain water content compared to controls. Moreover, the MSC injection increased NeuN and ZO-1 expression measured by immunochemistry/immunofluorescence. Furthermore, MSCs reduced not only levels of CD68, Iba1 and pro-inflammatory factors, but it also inhibited iNOS expression and peroxynitrite formation in perihematomal regions. The results suggest that intracerebral administration of MSCs accelerates neurological function recovery in HICH rats. This may result from the ability of MSCs to suppress inflammation, at least in part, by inhibiting iNOS expression and subsequent peroxynitrite formation.