FLOW MECHANISM AND EXPRIMENTAL STUDY OF COMMUTATING MEASUREMENTS IN BRANCHED-CHANNEL IN PUMPING STATION

BAOHUA CHEN,YUFENG CHANG,CHUNTIAN ZHOU 한국수자원학회 2005 한국수자원학회 학술대회 Vol.2005 No.1

Minimal Rational Curves on Complete Toric Manifolds and Applications

Chen, Yifei,Fu, Baohua,Hwang, Jun-Muk Cambridge University Press 2014 Proceedings of the Edinburgh Mathematical Society Vol.57 No.1

<B>Abstract</B><P>We show that minimal rational components on a complete toric manifold <I>X</I> correspond bijectively to some special primitive collections in the fan defining <I>X</I>, and the associated varieties of minimal rational tangents are linear subspaces. Two applications are given: the first is a classification of <I>n</I>-dimensional toric Fano manifolds with a minimal rational component of degree <I>n</I>, and the second shows that any complete toric manifold satisfying certain combinatorial conditions on the fan has the target rigidity property.</P>

Evolution of plant Ash1 SET genes: structural divergence and functional differentiation

Xinyu Zhu,Baohua Wang,Xianzhao Kan,Caoyi Chen,Chunmei Yu 한국유전학회 2013 Genes & Genomics Vol.35 No.4

Plant Ash1 SET proteins are involved in H3K36methylation, and play a key role in plant reproductive development. Genes encoding Ash1 SET proteins constitute a multigene family in which the copy number varies among plant species and functional divergence appears to have occurred repeatedly. To investigate the evolutionary history and functional differentiation of the Ash1 SET gene family,we made a comprehensive evolutionary analysis of this gene family from eleven major representatives of green plants. A novel deep sister relationship grouping previously resolved II-1 and II-2 orthologous groups was identified. The absence of AWS domain in the group II-2 suggests that the independent losses of AWS domain have occurred during evolution. A diversity of gene structures in plant Ash1 SET gene family have been presented since the divergence of Physcomitrella patens (moss) from the other land plants. A small proportion of codons in SET domain regions were detected to be under positive selection along the branches ancestral to land plant and angiosperms, which may have allowed changes of substrate specificity among different evolutionary groups while maintaining the primary function of SET domains. Our predictive subcellular localization and comparative anatomical meta-expression analyses can assort with the structural divergences of Ash1SET proteins.

LINC00943 knockdown exerts neuroprotective effects in Parkinson’s disease through regulates CXCL12 expression by sponging miR-7-5p

Han Lian,Baohua Wang,Quan Lu,Bin Chen,Hui Yang 한국유전학회 2021 Genes & Genomics Vol.43 No.7

Background Parkinson’s disease (PD) is a common neurodegenerative movement disorder, but the pathogenesis is still unclear. Long non-coding RNAs (lncRNAs) have been reported to play a prominent role in PD. Objective This study is designed to explore the role and mechanism of long intergenic non-coding RNA 00943 (LINC00943) in the N-methyl-4-phenylpyridine (MPP+)-inducted PD model. Methods LINC00943, microRNA-7-5p (miR-7-5p), and the chemokine (C-X-C motif) ligand 12 (CXCL12, also referred to as SDF-1) level were examined by real-time quantitative polymerase chain reaction (RT-qPCR). Cell viability and apoptosis were analyzed by 3-(4, 5-dimethyl-2-thiazolyl)-2, 5-diphenyl-2-H-tetrazolium bromide (MTT), and fow cytometry assays, severally. Protein levels of interleukin-1β (IL-1β), tumor necrosis factor-α (TNF-α), and CXCL12 were assessed by western blot assay. The ROS generation and SOD activity were detected by the corresponding kits. The binding relationship between miR-7-5p and LINC00943 or CXCL12 was predicted by Starbase and then verifed by a dual-luciferase reporter and RNA Immunoprecipitation (RIP) assays. Results LINC00943 and CXCL12 were increased, and miR-7-5p was decreased in MPP+-inducted SK-N-SH cells. LINC00943 silencing promoted cell viability, and repressed apoptosis and the infammatory response in MPP+-treated SK-N-SH cells. The mechanical analysis discovered that LINC00943 acted as a sponge of miR-7-5p to regulate CXCL12 expression. Conclusions LINC00943 knockdown could attenuate MPP+-triggered neuron injury by regulating the miR-7-5p/CXCL12 axis, hinting at a promising therapeutic target for PD treatment.

Genome‑wide association analysis of salt tolerance QTLs with SNP markers in maize (Zea mays L.)

Yonghong Xie,Yan Feng,Qi Chen,Feike Zhao,Shuijuan Zhou,Ying Ding,Xianliang Song,Ping Li,Baohua Wang 한국유전학회 2019 Genes & Genomics Vol.41 No.10

Background Salt-tolerant breeding of maize has great significance to the development and utilization of saline–alkaline soil and the maintenance of grain security. Genome-wide association study (GWAS) has been widely used in maize genetics and breeding. Objective To discover new salt-tolerant genes in maize by association analysis, which can provide technical supports for the innovation and genetic improvement of salt-tolerant germplasm resources in maize. Methods Totally 150 maize inbred lines were genotyped with a high-density chip. GWAS was carried out to identify the significant single nucleotide polymorphisms (SNPs) which were associated with maize salt tolerance. Totally 34,972 SNPs with high quality and diversity were selected from 56,110 SNP markers, which were distributed on 10 chromosomes of maize. The GLM algorithm in TASSEL5.2 was used to analyze the five traits related to salt tolerance. Results Using a strict LOD threshold of 4.5, totally 7 SNP loci were identified, which were significantly correlated with plant height change rate and fresh weight change rate. The high density fingerprints of 150 inbred lines were clustered by TASSEL5.2 software to construct genetic clustering map to estimate the genetic distance and the subgroups. The 150 maize inbred lines were divided into two groups: SS group and NSS group, and the SNP loci of the salt-tolerant index showed difference in chromosome distribution. Based on previous studies, we screened 8 candidate genes for salt tolerance in maize and four of them were further validated by real-time quantitative PCR. Conclusion Totally 7 SNP loci and 8 candidate genes related to salt tolerance in maize were identified, which will be of special value in molecular breeding of salt-tolerant maize.

Supragingival Plaque Microbial Community Analysis of Children with Halitosis^s

( Wen Ren ),( Qun Zhang ),( Xuenan Liu ),( Shuguo Zheng ),( Lili Ma ),( Feng Chen ),( Tao Xu ),( Baohua Xu ) 한국미생물 · 생명공학회 2016 Journal of microbiology and biotechnology Vol.26 No.12

As one of the most complex human-associated microbial habitats, the oral cavity harbors hundreds of bacteria. Halitosis is a prevalent oral condition that is typically caused by bacteria. The aim of this study was to analyze the microbial communities and predict functional profiles in supragingival plaque from healthy individuals and those with halitosis. Ten preschool children were enrolled in this study; five with halitosis and five without. Supragingival plaque was isolated from each participant and 16S rRNA gene pyrosequencing was used to identify the microbes present. Samples were primarily composed of Actinobacteria, Bacteroidetes, Proteobacteria, Firmicutes, Fusobacteria, and Candidate phylum TM7. The α and β diversity indices did not differ between healthy and halitosis subjects. Fifteen operational taxonomic units (OTUs) were identified with significantly different relative abundances between healthy and halitosis plaques, and included the phylotypes of Prevotella sp., Leptotrichia sp., Actinomyces sp., Porphyromonas sp., Selenomonas sp., Selenomonas noxia, and Capnocytophaga ochracea. We suggest that these OTUs are candidate halitosis-associated pathogens. Functional profiles were predicted using PICRUSt, and nine level-3 KEGG Orthology groups were significantly different. Hub modules of co-occurrence networks implied that microbes in halitosis dental plaque were more highly conserved than microbes of healthy individuals` plaque. Collectively, our data provide a background for the oral microbiota associated with halitosis from supragingival plaque, and help explain the etiology of halitosis.

The Diet Imbalance and Its Corrective Action in Chinese Athletes

Yang, ZeYi,Zhou, Lili,Yi, Muqing,Wang, Qirong,Gao, Hong,Xu, BaoHua,Qiao, Li,Chen, Jidi,Huang, Yuan,He, Cong,Wu, Wei,Sun, Nan,Chen, Rui 한국체육무용국제교류학회 2001 한국체육무용국제교류학회지 Vol.7 No.-

Diet is the most important substantial base to ensure athletes nutrients needs and maintain the performance. It is important for the Olympic Gold Medal Strategy. An athlete is like a racing car. Therere two key factors for the car to run faster: the engine and the gasoline. The physical components decide the engines highest power while the diet is like the gasoline the better quality of the gasoline is, the faster the urns. It is inconsistent between the importance of diet for competitive sports and the ubiquity of diet imbalance. It will influence the training efficiency and the recovery after training for a long time, and consequently hinder the improvement of the performance.

Exploring the oral microflora of preschool children

Wen Ren,Qun Zhang,Xuenan Liu,Shuguo Zheng,Lili Ma,Feng Chen,Tao Xu,Baohua Xu 한국미생물학회 2017 The journal of microbiology Vol.55 No.7

The oral cavity is one of the most important and complicated habitats in our body and supports diverse microbial communities. In this study, we aimed to determine the bacterial diversity and composition of various oral micro-niches. Samples were collected from supragingival plaque, saliva, and tongue coating from 10 preschool children (30 samples total). 16S rRNA gene pyrosequencing dataset generated 314,639 clean reads with an average of 10,488 ± 2,787 reads per sample. The phyla Firmicutes, Proteobacteria, Actinobacteria, Bacteroidetes, and Fusobacteria were predominant, accounting for more than 90% of the total sequences. We found the highest α diversity, microbial richness, and evenness in plaque, compared with saliva and tongue coating. Plaque was also distinguished from saliva and tongue coating by phylogenetic distances (weighted UniFrac). Taxa with different relative abundances were further identified, confirming the existence of microbial differences across the three niches. Core microbiomes were defined of each niche; however, only a small proportion of operational taxonomic units (8.07%) were shared by the three niches. Coaggregation between Actinomyces spp. and Streptococcus spp. and other correlations among periodontal pathogens, such as Prevotella, Fusobacteria, Capnocytophaga, and Tannerella, were shown by a co-occurrence network. In summary, our study provides a framework of oral microbial communities in the population of preschool children as a baseline for further studies of oral diseases related to microbes.