Polymorphisms in Epigenetic and Meat Quality Related Genes in Fourteen Cattle Breeds and Association with Beef Quality and Carcass Traits

Liu, Xuan,Usman, Tahir,Wang, Yachun,Wang, Zezhao,Xu, Xianzhou,Wu, Meng,Zhang, Yi,Zhang, Xu,Li, Qiang,Liu, Lin,Shi, Wanhai,Qin, Chunhua,Geng, Fanjun,Wang, Congyong,Tan, Rui,Huang, Xixia,Liu, Airong,Wu, Asian Australasian Association of Animal Productio 2015 Animal Bioscience Vol.28 No.4

Improvement for carcass traits related to beef quality is the key concern in beef production. Recent reports found that epigenetics mediates the interaction of individuals with environment and nutrition. The present study was designed to analyze the genetic effect of single nucleotide polymorphisms (SNPs) in seven epigenetic-related genes (DNMT1, DNMT3a, DNMT3b, DNMT3L, Ago1, Ago2, and HDAC5) and two meat quality candidate genes (CAPN1 and PRKAG3) on fourteen carcass traits related to beef quality in a Snow Dragon beef population, and also to identify SNPs in a total of fourteen cattle populations. Sixteen SNPs were identified and genotyped in 383 individuals sampled from the 14 cattle breeds, which included 147 samples from the Snow Dragon beef population. Data analysis showed significant association of 8 SNPs within 4 genes related to carcass and/or meat quality traits in the beef populations. SNP1 (13154420A>G) in exon 17 of DNMT1 was significantly associated with rib-eye width and lean meat color score (p<0.05). A novel SNP (SNP4, 76198537A>G) of DNMT3a was significantly associated with six beef quality traits. Those individuals with the wild-type genotype AA of DNMT3a showed an increase in carcass weight, chilled carcass weight, flank thicknesses, chuck short rib thickness, chuck short rib score and in chuck flap weight in contrast to the GG genotype. Five out of six SNPs in DNMT3b gene were significantly associated with three beef quality traits. SNP15 (45219258C>T) in CAPN1 was significantly associated with chuck short rib thickness and lean meat color score (p<0.05). The significant effect of SNP15 on lean meat color score individually and in combination with each of other 14 SNPs qualify this SNP to be used as potential marker for improving the trait. In addition, the frequencies of most wild-type alleles were higher than those of the mutant alleles in the native and foreign cattle breeds. Seven SNPs were identified in the epigenetic-related genes. The SNP15 in CAPN1 could be used as a powerful genetic marker in selection programs for beef quality improvement in the Snow Dragon Beef population.

Polymorphisms in Epigenetic and Meat Quality Related Genes in Fourteen Cattle Breeds and Association with Beef Quality and Carcass Traits

Xuan Liu,Tahir Usman,Yachun Wang,Zezhao Wang,Xianzhou Xu,Meng Wu,Yi Zhang,Xu Zhang,Qiang Li,Lin Liu,Wanhai Shi,Chunhua Qin,Fanjun Geng,Congyong Wang,Rui Tan,Xixia Huang,Airong Liu,Hongjun Wu,Shixin Ta 아세아·태평양축산학회 2015 Animal Bioscience Vol.28 No.4

Improvement for carcass traits related to beef quality is the key concern in beef production. Recent reports found that epigenetics mediates the interaction of individuals with environment and nutrition. The present study was designed to analyze the genetic effect of single nucleotide polymorphisms (SNPs) in seven epigenetic-related genes (DNMT1, DNMT3a, DNMT3b, DNMT3L, Ago1, Ago2, and HDAC5) and two meat quality candidate genes (CAPN1 and PRKAG3) on fourteen carcass traits related to beef quality in a Snow Dragon beef population, and also to identify SNPs in a total of fourteen cattle populations. Sixteen SNPs were identified and genotyped in 383 individuals sampled from the 14 cattle breeds, which included 147 samples from the Snow Dragon beef population. Data analysis showed significant association of 8 SNPs within 4 genes related to carcass and/or meat quality traits in the beef populations. SNP1 (13154420A>G) in exon 17 of DNMT1 was significantly associated with rib-eye width and lean meat color score (p<0.05). A novel SNP (SNP4, 76198537A>G) of DNMT3a was significantly associated with six beef quality traits. Those individuals with the wild-type genotype AA of DNMT3a showed an increase in carcass weight, chilled carcass weight, flank thicknesses, chuck short rib thickness, chuck short rib score and in chuck flap weight in contrast to the GG genotype. Five out of six SNPs in DNMT3b gene were significantly associated with three beef quality traits. SNP15 (45219258C>T) in CAPN1 was significantly associated with chuck short rib thickness and lean meat color score (p<0.05). The significant effect of SNP15 on lean meat color score individually and in combination with each of other 14 SNPs qualify this SNP to be used as potential marker for improving the trait. In addition, the frequencies of most wild-type alleles were higher than those of the mutant alleles in the native and foreign cattle breeds. Seven SNPs were identified in the epigenetic-related genes. The SNP15 in CAPN1 could be used as a powerful genetic marker in selection programs for beef quality improvement in the Snow Dragon Beef population.

Integrated analysis of transcriptome and milk metagenome in subclinical mastitic and healthy cows

Zhang Jinning,Liu Xueqin,Usman Tahir,Tang Yongjie,Mi Siyuan,Li Wenlong,Yang Mengyou,Yu Ying 아세아·태평양축산학회 2024 Animal Bioscience Vol.37 No.4

Objective: Abnormally increased somatic cell counts (SCCs) in milk is usually a sign of bovine subclinical mastitis. Mutual interaction between the host and its associated microbiota plays an important role in developing such diseases. The main objective of this study was to explore the difference between cows with elevated SCCs and healthy cattle from the perspective of host-microbe interplay. Methods: A total of 31 milk samples and 23 bovine peripheral blood samples were collected from Holstein dairy cattle to conduct an integrated analysis of transcriptomic and metagenomics. Results: The results showed that Ralstonia and Sphingomonas were enriched in cows with subclinical mastitis. The relative abundance of the two bacteria was positively correlated with the expression level of bovine transcobalamin 1 and uridine phosphorylase 1 encoding gene. Moreover, functional analysis revealed a distinct alternation in some important microbial biological processes. Conclusion: These results reveal the relative abundance of Ralstonia and Sphingomonas other than common mastitis-causing pathogens varied from healthy cows to those with subclinical mastitis and might be associated with elevated SCCs. Potential association was observed between bovine milk microbiota composition and the transcriptional pattern of some genes, thus providing new insights to understand homeostasis of bovine udder.

Polyaniline-engineered zinc sulphide nanocomposite as a highly efficient electrocatalyst for the oxygen evolution process

Alenad Asma M.,Fatima Sofia,Khalid Usman,Bano Nigarish,Abid Abdul Ghafoor,Manzoor Sumaira,Farid Hafiz Muhammad Tahir,Messali Mouslim,Alzahrani Huda A.,Taha Taha Abdel Mohaymen 한국세라믹학회 2023 한국세라믹학회지 Vol.60 No.5

Hydrogen is the ideal future fuel, since it is clean, saves energy, and is abundant in nature. Though there are several methods for producing hydrogen, only a few of them are environmentally friendly. To employ water electrolysis to make hydrogen and solve the energy shortage problem, highly active electrocatalysts must be created. Zinc sulphide/polyaniline (ZnS/PANI) nanocomposite was successfully produced using a straightforward two-step coprecipitation and polymerization procedure. Different analyses were used to characterize the fabricated materials. The findings show that the ZnS/PANI nanocomposite's morphology has a consistent porous shape, and the electrical structure of the active sites determines how well catalysts can make contact with the intermediates. Multiple attempts have been made to create the most affordable, functional electrocatalyst for oxygen evolution reactions (OER). However, clean energy production from such materials is sluggish. In comparison to pure PANI nanofibers (143.14 m2 g−1 and 0.4827 nm) and ZnS nanostructures (249.85 m2 g−1 and 0.4224 nm), the composite ZnS/PANI displays a greater Brunauer–Emmett–Teller (BET) surface area around 372.65 m2 g−1 along with nanoporous size of 0.393 nm due to the interaction, which provides distinctive features in contrast to ZnS and PANI. Synergistically, composite ZnS/PANI indicates lower overpotentials of 132 mV for oxygen evolution performance at 10 mA cm−2. An improved OER activity is observed by composite ZnS/PANIs as high current density, lower overpotential and reduced Tafel value of 53 mV dec−1. This catalyst also exhibited a significant double-layer capacitance and a large electrochemically active surface area. ZnS/PANI is a magnificent electrocatalyst for oxygen evolution.

Virulence of entomopathogenic fungi Beauveria bassiana and Metarhizium anisopliae against red palm weevil, Rhynchophorus ferrugineus (Olivier)

Muhammad YASIN,Waqas Wakil,Muhammad Usman GHAZANFAR,Mirza Abdul QAYYUM,Muhammad TAHIR,Geoffrey O. BEDFORD 한국곤충학회 2019 Entomological Research Vol.49 No.1

Nineteen different isolates of the entomopathogenic fungi Beauveria bassiana sensu lato (s.l.) and Metarhizium anisopliae s.l. (Ascomycota: Hypocreales), recovered from different soil samples (field crops, fruit orchards, vegetable fields and forests) and insect cadavers were tested against Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae) at two different spore concentrations (1 × 107 and 1 × 108 conidia mL−1). Three isolates of B. bassiana and two of M. anisopliae gave >88 % larval and >75 % adult mortality of R. ferrugineus on their highest dose rate respectively. More sporulating cadavers (mycosis) resulted from a high dose rate compared to low dose on both life stages of R. ferrugineus. The current study confirmed the lethal action of B. bassiana and M. anisopliae isolates with mortality levels usually directly proportional to the conidial concentration. This study further confirmed that the isolates recovered from R. ferrugineus dead cadavers gave more mortality compared to the other sources. In the virulence assay two isolates of B. bassiana caused the highest percentage of both larval and adult mortality at all exposure intervals which suggest that they may be the most promising for use in sustainable management programs aimed at microbial control in date palm orchards.

Investigation on the Beneficiation of Fluorite-ore using a mixture of Oleic acid and Palmitic acid via Froth Flotation

Aiman Fatima,Syed Sheraz Daood,Shafia Inaam,Zaeem Bin Babar,Ashfaq Ahmed,Muhammad Zafar,Tahir Maqsood Qaisrani,Abdul Razzaq,Muhammad Usman Rashid,Sunhyung Kim,Young-Kwon Park 대한환경공학회 2023 Environmental Engineering Research Vol.28 No.3

Fluorite (fluorspar), an important industrial mineral ore, is one of the major raw materials for the production of hydrofluoric acid. Naturally occurring fluorite ore contains gangue minerals, primarily silica (SiO2) and calcite (CaCO3). The beneficiation of fluorspar is needed to mitigate the severity of operational issues. Several studies on fluorspar beneficiation using the froth floatation technique have been executed, but the process is restricted by the use of minerals acids to remove calcite. In this study, a novel scheme for fluorspar beneficiation was investigated for the floatation of fluorite and depression of calcite and other gangue minerals simultaneously without the use of mineral acids. Moreover, mixtures of saturated and unsaturated fatty acids (oleic acid and palmitic acid) were used instead of mineral acids. Various parameters were investigated, such as the weight percent of the feed-slurry, feed pH, the effect of reagents on the process selectivity, and the effect of feed boiling and dilution on the up-gradation of fluorspar. The adopted methodology with tested reagents resulted a 67 wt. % reduction of CO32− and 75 wt. % reduction of SiO2 in gangue material at a pH 10 for the feed slurry. Fluorspar purity increased from 65–75 wt. % to 95 wt. % after the boiling and dilution steps, respectively.