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Diversity of Yeasts Associated with Panax ginseng
Soon Gyu Hong,Kang Hyun Lee,Jangyul Kwak,배경숙 한국미생물학회 2006 The journal of microbiology Vol.44 No.6
Biodiversity of yeasts was investigated in the ginseng cultivation field. Among 34 isolates tested in this study, 26 isolates belonged to the hymenomycetous yeast group. These 26 strains were classified into 12 species including four new-species candidates that did not have clear affiliation to any established species. Seven isolates among the remaining strains were classified into three ascomycetous yeast species, and one isolate was identified as a urediniomycetous yeast species.
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Kang, Yongsung,Kim, Jinwoo,Kim, Suhyun,Kim, Hongsup,Lim, Jae Yun,Kim, Minkyun,Kwak, Jangyul,Moon, Jae Sun,Hwang, Ingyu WILEY-VCH Verlag 2008 Proteomics Vol.8 No.1
<P>Plant pathogenic bacteria transfer effector proteins into plant cells via the hypersensitive response and pathogenicity (Hrp) type III protein secretion system (T3SS) during infection. The genes encoding the Hrp T3SS are expressed only under plant apoplast-mimicking conditions in an AraC-type transcriptional activator HrpB-dependent manner. To identify the proteins controlled by HrpB in Burkholderia glumae in vitro, we constitutively expressed hrpB and analyzed the proteins showing altered expression using 2-DE and ESI-MS/MS. Among 46 proteins exhibiting consistently altered expression, which were encoded by 34 different genes, 34 were secretory proteins and 12 were cytoplasmic. Twenty-eight of the secreted proteins showed increased accumulation, whereas the other six showed decreased accumulation. None of the HrpB-dependent proteins had significant homology to known T3SS-dependent proteins, except for HrpK from Pseudomonas syringae pv. syringae and two T3SS-associated cytoplasmic proteins from Ralstonia solanacearum. Twenty-one of the 34 genes had putative HrpB-binding sequences in their upstream regulatory regions. Secretion of all 34 extracellular proteins was independent of the Hrp T3SS, and 16 were secreted via a type II protein secretion system (T2SS). Mutants lacking the T2SS or Hrp T3SS produced toxoflavin but were less virulent to rice panicles, indicating the importance of these proteins in pathogenicity.</P>
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무당거미에서 분리한 Serratia proteamaculans에서 분비되는 단백질분해효소의 생화학적 특성
이기은,김철희,권현정,곽장열,신동하,박두상,배경숙,박호용,Lee Kieun,Kim Chul-Hee,Kwon Hyun-Jung,Kwak Jangyul,Shin Dong-Ha,Park Doo-Sang,Bae Kyung-Sook,Park Ho-Yong 한국미생물학회 2004 미생물학회지 Vol.40 No.4
거미의 중장에서 분리한 장내 세균인 Serratia proteamaculans는 우유 단백질 배지상에서 투명환을 형성하는 것으로 보아 세포 외로 분비되는 단백질 분해효소를 생산함을 알 수 있었다. Zymogram을 사용한 단백질 분획의 활성 염색 실험에서 세포 외로 분비된 분자량 52 KD의 단백질이 높은 단백질분해 활성을 가진 것으로 추정되었다. 이 단백질 분해효소의 배양 상등액을 여과, 이온교환, 크로마토그래피 등의 방법을 사용하여 순수 정제하였다. 정제된 단백질 분해 효소는 pH 6.0과 10.0사이와 넓은 온도범위에서 상대적으로 높은 활성을 나타내었다. 1,10-phenanthroline과 EDTA등의 단백질분해효소 저해제를 처리하였을 때 단백질 분해 활성이 강하게 억제되며 $Zn^{2+}$이나 $Ca^{2+}$ 이온의 존재에 의해 단백질 분해효소의 활성이 증가되는 것으로 보아 이 효소가 금속성 단백질 분해효소임을 알 수 있었다. Serratia proteamaculans isolated from the midgut of a spider formed big halos around the bacterial colonies, indicating that the bacterial strain produces an extracellular protease. Activity staining of the extracellular protein fractions using zymogram also demonstrated that the major protein with an estimated molecular mass of 52 kDa contained a high proteolytic activity. The protease was purified to near electrophoretic homogeneity from the culture supernatant after filtration and ion exchange and size exclusion chromatography. The purified enzyme had a relatively high proteolytic activity between pH 6.0 and 10.0 and at broad temperature range. The proteolytic activity of the enzyme was not inhibited by phenylmethylsulfonyl fluoride but strongly inhibited by 1, 10-phenanthroline and EDTA. The activity also was dependent on the presence of $Ca^{++}\;and\;Zn^{++}$ ions. These observations indicate that the enzyme is a metalloprotease.
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