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      • Multi-granulation rough set: from crisp to fuzzy case

        Xi-Bei Yang,Xiaoning Song,Huili Dou,Jingyu Yang 원광대학교 기초자연과학연구소 2011 ANNALS OF FUZZY MATHEMATICS AND INFORMATICS Vol.1 No.1

        Multi–granulation is an improvement of the classical rough set theory since it uses a family of binary relations instead of of a single indiscernibility relation for the constructing of approximation. In this paper, the multi–granulation rough set approach is further generalized into fuzzy environment. A family of fuzzy $T$–similarity relations are used to define the optimistic and pessimistic fuzzy rough sets respectively. The basic properties about these fuzzy rough sets are then discussed. Finally, the relationships among single relation based fuzzy rough set, optimistic and pessimistic multi–granulation fuzzy rough sets are addressed.

      • Characterization and Expression Profile of CMTM3/CKLFSF3

        Zhong, Ji,Wang, Yu,Qiu, Xiaoyan,Mo, Xiaoning,Liu, Yanan,Li, Ting,Song, Quansheng,Ma, Dalong,Han, Wenling Korean Society for Biochemistry and Molecular Biol 2006 Journal of biochemistry and molecular biology Vol.39 No.5

        CMTM/CKLFSF is a novel family of proteins linking chemokines and TM4SF. In humans, these proteins are encoded by nine genes, CKLF and CMTM1-8/CKLFSF1-8. Here we report the characteristics and expression profile of CMTM3/CKLFSF3. Human CMTM3/CKLFSF3 has a high sequence identity among various species and similar characteristics as its mouse and rat homologues. Established by results both of RT-PCR and Quantitative Real-time PCR, the gene is highly transcribed in testis, leukocytes and spleen. For further verification, we generated a polyclonal antibody against human CMTM3/CKLFSF3 and found that the protein is highly expressed in the testis and some cells of PBMCs. Therefore, CMTM3/CKLFSF3 is an evolutionarily conserved gene that may have important roles in the male reproductive system and immune system. Further studies are necessary to validate its functions in the two systems.

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        Biochemical Properties and Physiological Roles of NADP-Dependent Malic Enzyme in Escherichia coli

        Baojuan Wang,Peng Wang,Enxia Zheng,Xiangxian Chen,Hanjun Zhao,Ping Song,Ruirui Su,Xiaoning Li,Guoping Zhu 한국미생물학회 2011 The journal of microbiology Vol.49 No.5

        Malic enzymes catalyze the reversible oxidative decarboxylation of L-malate using NAD(P)^+ as a cofactor. NADP-dependent malic enzyme (MaeB) from Escherichia coli MG1655 was expressed and purified as a fusion protein. The molecular weight of MaeB was about 83 kDa, as determined by SDS-PAGE. The recombinant MaeB showed a maximum activity at pH 7.8 and 46°C. MaeB activity was dependent on the presence of Mn^(2+) but was strongly inhibited by Zn^(2+). In order to understand the physiological roles, recombinant E. coli strains (icdNADP/ΔmaeB and icdNAD/ΔmaeB) containing NADP-dependent isocitrate dehydrogenase (IDH), or engineered NAD-dependent IDH with the deletion of the maeB gene, were constructed using homologous recombination. During growth on acetate, icd^(NAD)/ΔmaeB grew poorly, having a growth rate only 60% that of the wild-type strain (icd^(NADP)). Furthermore, icd^(NAD)P/ΔmaeB exhibited a 2-fold greater adaptability to acetate than icdNAD/ΔmaeB, which may be explained by more NADPH production for biosynthesis in icd^(NAD)P/ΔmaeB due to its NADP-dependent IDH. These results indicated that MaeB was important for NADPH production for bacterial growth on acetate. We also observed that MaeB activity was significantly enhanced (7.83-fold) in icd^(NAD), which was about 3-fold higher than that in icd^(NADP), when switching from glucose to acetate. The marked increase of MaeB activity was probably induced by the shortage of NADPH in icd^(NAD). Evidently, MaeB contributed to the NADPH generation needed for bacterial growth on two carbon compounds.

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