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Wang, Shuang,Zhang, Yuchen,Dai, Wenrui,Lauter, Kristin,Kim, Miran,Tang, Yuzhe,Xiong, Hongkai,Jiang, Xiaoqian Oxford University Press 2016 Bioinformatics Vol.32 No.2
<P>Motivation: Genome-wide association studies (GWAS) have been widely used in discovering the association between genotypes and phenotypes. Human genome data contain valuable but highly sensitive information. Unprotected disclosure of such information might put individual's privacy at risk. It is important to protect human genome data. Exact logistic regression is a bias-reduction method based on a penalized likelihood to discover rare variants that are associated with disease susceptibility. We propose the HEALER framework to facilitate secure rare variants analysis with a small sample size. Results: We target at the algorithm design aiming at reducing the computational and storage costs to learn a homomorphic exact logistic regression model (i.e. evaluate P-values of coefficients), where the circuit depth is proportional to the logarithmic scale of data size. We evaluate the algorithm performance using rare Kawasaki Disease datasets.</P>
Prediction of black tea fermentation quality indices using NIRS and nonlinear tools
Chunwang Dong,Hongkai Zhu,Jinjin Wang,Haibo Yuan,Jiewen Zhao,Quansheng Chen 한국식품과학회 2017 Food Science and Biotechnology Vol.26 No.4
Catechin content, the ratio of tea polyphenols and free amino acids (TP/FAA), as well as the ratio of theaflavins and thearubigins (TFs/TRs) are important biochemical indicators to evaluate fermentation quality. To achieve rapid determination of such biochemical indicators, synergy interval partial least square and extreme learning machine combined with an adaptive boosting algorithm, Si-ELM-AdaBoost algorithm, were used to establish quantitative analysis models between near infrared spectroscopy (NIRS) and catechin content and between TFs/TRs and TP/FAA, respectively. The results showed that prediction performance of the Si-ELM-AdaBoost mixed algorithm is superior than that of other models. The prediction results with root-mean-square error of prediction ranged from 0.006 to 0.563, the ratio performance deviation values exceeded 2.5, and predictive correlation coefficient values exceeded 0.9 in the prediction model of each biochemical indicator. NIRS combined with Si-ELMAdaBoost mixed algorithm could be utilized for online monitoring of black tea fermentation. Meanwhile, the AdaBoost algorithm effectively improved the accuracy of the ELM model and could better approach the nonlinear continuous function.
Preparation of 2,3,4,5-Tetrafluorobenzoic Acid
Li, Hua,Wang, Hongkai,Zhao, Ruiju,Liu, Juan,Zhao, Zhengui,Hu, Guoqin,Liang, Zhengyong Korean Chemical Society 2010 대한화학회지 Vol.54 No.6
Fluoroquinolone 항생제의 중요한 중간체인 2,3,4,5-tetrafluorobenzoic acid를 tetrachloride phthalic anhydride에서 출발 하여 imidation, fluorination, hydrolysis과 decarboxylation단계를 거쳐서 합성하였다. Imdation 단계에서는 상전이 촉매를 이용하여 98.2%의 수율로 합성하였으며, fluorination 단계에서는 81.3%, 가수분해 단계에서는 88.6%, 마지막으로 decarboxylation단계에서는 81.6%의 수율로 합성하였다. 2,3,4,5-Tetrafluorobenzoic acid, an important intermediates of fluoroquinolone antibiotics, was synthesized from tetrachloride phthalic anhydride through imidation, fluorination, hydrolysis and decarboxylation. The effects of phase transfer catalyst on imidation and fluorination reaction and the effects of surfactants on the hydrolysis reaction were studied, respectively. Experimental results showed that the imidation reaction time was greatly reduced in the presence of a phase transfer catalyst, hexadecyltrimethyl, resulting in imidation yield as high as 98.2%. The fluorination yield reached 81.3% when tetrabutylammonium bromide was chosen as a phase transfer catalyst. The hydrolysis reaction time was also decreased by adding hexadecyltrimethyl while increasing the yield to 88.6%. In the post-processing, the sublimation method was used to purify the product, and ideal effect was obtained. In the decarboxylation reaction, tetrafluoride phthalic acid was obtained by decarboxylation in the solvent of tri-n-butyl amine and decarboxylation yield reached 81.6%. Compared with the literature method, the overall reaction time of the improved method decreased from 53 h to 20.5 h and the total yield increased from 47.3% to 57.4%.
Preparation of Novel Ionic Liquids and Their Applications in Brominating Reaction
Li, Hua,Liu, Juan,Zhu, Jiang,Wang, Hongkai Korean Chemical Society 2011 대한화학회지 Vol.55 No.4
새로운 산성 이온용액인1-(${\omega}$-sulfonicacid)propyl-3-methylimidazolium bromide ([$HSO_3$pmim]Br)과 1-(${\omega}$-sulfonicacid)-butyl-3-methylimidazolium bromide([$HSO_3$bmim]Br)을 제조하였다. 이 화합물들을 브롬화 시약 및 용매로 사용하여 $100^{\circ}C$, 2시간 반응시켰으며, 간단히 상분리에 의해 1,7-dibromoheptane을 95% 수율로 합성하였다. 이 산성 이온용액을 5회 재사용하였으나 수율 감소가 관찰되지 않았다. Novel acidic ionic liquids, 1-(${\omega}$-sulfonicacid)propyl-3-methylimidazolium bromide ([$HSO_3$pmim]Br)and 1-(${\omega}$-sulfonicacid)butyl-3-methylimidazolium bromide ([$HSO_3$bmim]Br), were prepared and used as brominating agents, catalysts and solvents in the synthesis of 1,7-dibromoheptane, respectively. 1,7-dibromoheptan with a yield of 95% was obtained at $100^{\circ}C$ for 2 h by simple phase separation. The acidic ionic liquid [$HSO_3$pmim]Br was recycled for 5 times and the yield of 1,7-dibromoheptane did not decrease remarkably, which indicates that catalysts still maintain good selectivity and activity after recycling. The structure of the acidic ionic liquid [$HSO_3$pmim]Br was characterized with IR, and it was found that [$HSO_3$pmim]Br had stronger acidity than other ionic liquid.
Yajun Zhang,Jun Wu,Bing Wang,Hongkai Wang,Xiaohui Shang 한국인터넷정보학회 2023 KSII Transactions on Internet and Information Syst Vol.17 No.9
The paper focuses on investigating secure transmission in wireless powered communication networks (WPCN) that involve multiple energy-constrained relays and one energy-constrained source. The energy is harvested from a power beacon (PB) while operating in the presence of a passive eavesdropper. The study primarily aims to achieve energy-efficient secure communications by examining the impact of channel estimation on the secrecy performance of WPCN under both perfect and imperfect CSI scenarios. To obtain practical insights on improving security and energy efficiency, we propose closed-form expressions for secrecy outage probability (SOP) under the linear energy harvesting (LEH) model of WPCN. Furthermore, we suggest a search method to optimize the secure energy efficiency (SEE) with limited power from PB. The research emphasizes the significance of channel estimation in maintaining the desired performance levels in WPCN in real-world applications. The theoretical results are validated through simulations to ensure their accuracy and reliability.