Predominant expression of exon 7 skipped SMN mRNAs in lung based on analysis of transcriptome sequencing datasets

Yang, Xiaoming,Shen, Haihong,Gao, Xue,Zheng, Xuexiu,Qin, Ryan,Zhou, Jianhua Springer-Verlag 2014 NEUROLOGICAL SCIENCES Vol.35 No.3

Association Between the XRCC3 Thr241Met Polymorphism and Cervical Cancer Risk: a Meta-analysis

Qin, Ling-Yan,Chen, Xu,Li, Ping,Yang, Zheng,Mo, Wu-Ning Asian Pacific Journal of Cancer Prevention 2013 Asian Pacific journal of cancer prevention Vol.14 No.11

Background: Numerous epidemiological studies have been conducted to evaluate the association between variants of the DNA repair gene XRCC3 and cancer risk. Here we focused on one XRCC3 polymorphism and development of cervical cancer, performing a meta-analysis. Methods: The pooled association between the XRCC3 Thr241Met polymorphism and cervical cancer risk was assessed by odds ratios (ORs) and their 95% confidence intervals (95%CIs). Results: A total of 5 case-control studies met the inclusion criteria. The pooled ORs for the total included studies showed no association among homozygotes TT vs. CC: OR=1.93, 95%CI=0.68-5.49, P=0.22; dominant model TT+TC vs. CC: OR=1.37, 95%CI=0.90-2.06, P=0.14; and recessive model TT vs. TC+CC: OR=1.76, 95%CI=0.68-4.55, P=0.25, but might be a slight risk factor for cervical cancer in heterozygote contrast TT vs. CT: OR= 1.33, 95%CI=1.04-1.71, P=0.02. In subgroup analysis, significant associations were found for Asians under all genetic models. Conclusions: Our meta-analysis suggested the XRCC3 Thr241Met polymorphism might not act as a cervical cancer risk factor overall. However, in subgroup analysis, a significant association was found in Asians under all genetic models. The association should be studied with a larger, stratified population, especially for Asians.

Inhibition of α-glucosidase by 2-thiobarbituric acid: Molecular dynamics simulation integrating parabolic noncompetitive inhibition kinetics

Qin, Xiu-Yuan,Lee, Jinhyuk,Zheng, Li,Yang, Jun-Mo,Gong, Yan,Park, Yong-Doo Elsevier 2018 Process biochemistry Vol.65 No.-

<P><B>Abstract</B></P> <P>The phenomenon of α-glucosidase inhibition has attracted the attention of researchers due to its association with type 2 diabetes treatment in humans. In this study, we found that 2-thiobarbituric acid (TBA) induces complex inhibition of α-glucosidase using kinetics tests and molecular dynamics (MD) simulations. Computational MD and docking simulations demonstrate that TBA interacts with three residues on active sites of α-glucosidase such as Met69, Arg212, and His348. These biochemical tests indicate that TBA reversibly inhibits α-glucosidase in a parabolic noncompetitive manner (<I>IC</I> <SUB>50</SUB> =17.13±1.14mM; <I>K</I> <SUB>i</SUB> =13.25±0.56mM) and that this inhibition is accompanied by a biphasic kinetic process. The tertiary conformational changes were not synchronized with TBA inhibition but we observed hydrophobic disruption after inactivation at higher concentrations of TBA. Our results provide insight into the functional roles of residues located at the active sites of α-glucosidase, and we suggest that compounds similar to TBA (heterocyclic compounds) targeting the key residues of active sites are potential α-glucosidase inhibitors.</P> <P><B>Highlights</B></P> <P> <UL> <LI> 2-Thiobarbituric acid (TBA) induces complex inhibition of α-glucosidase. </LI> <LI> Computational MD simulations demonstrate that TBA interacts with Met69, Arg212, and His348. </LI> <LI> TBA reversibly inhibits α-glucosidase in a parabolic noncompetitive manner (<I>IC</I> <SUB>50</SUB> =17.13±1.14mM; <I>K</I> <SUB>i</SUB> =13.25±0.56mM). </LI> <LI> The high dose of TBA induces hydrophobic disruption after inactivation. </LI> <LI> Heterocyclic compounds targeting the key residues of active sites are potential α-glucosidase inhibitors. </LI> </UL> </P> <P><B>Graphical abstract</B></P> <P>[DISPLAY OMISSION]</P>

The CCND1 G870A Gene Polymorphism and Leukemia or Non-Hodgkin Lymphoma Risk: a Meta-analysis

Qin, Ling-Yan,Zhao, Li-Gang,Chen, Xu,Yang, Zheng,Mo, Wu-Ning Asian Pacific Journal of Cancer Prevention 2014 Asian Pacific journal of cancer prevention Vol.15 No.16

In recent years, mounting evidence has indicated that the CCND1 G870A gene polymorphism, which impacts the mitotic cell cycle, may influence leukemia or non-Hodgkin lymphoma risk. Unfortunately, the previous results were inconsistent. Therefore, a meta-analysis was performed to obtain a more precise estimation of any association. We conducted a search in PubMed, Embase and CNKI covering all published papers up to March, 2014. A total of 9 publications including 10 case-control studies met the inclusion criteria. Odds ratios (ORs) and their 95% confidence intervals (95%CIs) were applied to assess association. The pooled ORs showed significant association in non-Hodgkin lymphoma (comparison A vs G: OR= 1.114, 95%CI=1.053-1.179, p=0.000; homozygote comparison AA vs GG: OR=1.245, 95%CI=1.110-1.396, p=0.000; heterozygote comparison AG vs GG: OR=1.095, 95%CI=1.000-1.199, p=0.05; dominant model AA/GA vs GG: OR=1.137, 95%CI=1.043-1.239, p=0.003; and recessive model AA vs GA/GG: OR=1.177, 95%CI=1.066-1.301, p=0.001). However, there was no association between the CCND1 G870A polymorphism and leukemia risk. In conclusion, the CCND1 G870A polymorphism may increase risk of non-Hodgkin lymphoma, but not leukemia. However, more primary large scale and well-designed studies are still required to evaluate the interaction of CCND1 G870A polymorphism with leukemia and non-Hodgkin lymphoma risk.

The CCND1 G870A Gene Polymorphism and Brain Tumor Risk: a Meta-analysis

Qin, Ling-Yan,Zhao, Li-Gang,Chen, Xu,Li, Ping,Yang, Zheng,Mo, Wu-Ning Asian Pacific Journal of Cancer Prevention 2014 Asian Pacific journal of cancer prevention Vol.15 No.8

Background: In recent years, numerous studies have been performed to investigate the CCND1 G870A gene polymorphism impact on brain tumors susceptibility. Unfortunately, the results of previous studies were inconsistent. Therefore, we performed a meta-analysis to derive a more precise estimation of any association. Materials and Methods: We conducted a search in PubMed, Embase and CNKI covering all published papers up to November, 2013. Odds ratios (ORs) and their 95% confidence intervals (95%CIs) were applied to assess associations. Results: A total of 6 publications including 9 case-control studies met the inclusion criteria. The pooled ORs for the total included studies showed significant association among comparison A vs G (OR= 1.246, 95%CI= 1.092-1.423, p= 0.001), homozygote comparison AA vs GG (OR= 1.566, 95%CI= 1.194-2.054, p= 0.001), heterozygote comparison AG vs GG (OR= 1.290, 95%CI= 0.934-1.782, p= 0.122), dominant model AA/GA vs GG (OR= 1.381, 95%CI= 1.048-1.821, p= 0.022) and recessive model AA vs GA/GG (OR= 1.323, 95%CI= 1.057-1.657, p= 0.015) especially in glioma. Conclusions: CCND1 G870A polymorphism may increase brain tumor risk, especially for gliomas. However, more primary large scale and well-designed studies are still required to evaluate the interaction of CCND1 G870A polymorphism with brain tumor risk.

PKHD1 Gene Silencing May Cause Cell Abnormal Proliferation through Modulation of Intracellular Calcium in Autosomal Recessive Polycystic Kidney Disease

Yang, Ji-Yun,Zhang, Sizhong,Zhou, Qin,Guo, Hong,Zhang, Ke,Zheng, Rong,Xiao, Cuiying Korean Society for Biochemistry and Molecular Biol 2007 Journal of biochemistry and molecular biology Vol.40 No.4

Autosomal recessive polycystic kidney disease (ARPKD) is one of the important genetic disorders in pediatric practice. Mutation of the polycystic kidney and hepatic disease gene 1 (PKHD1) was identified as the cause of ARPKD. The gene encodes a 67-exon transcript for a large protein of 4074 amino acids termed fibrocystin, but its function remains unknown. The neoplastic-like in cystic epithelial proliferation and the epidermal growth factor/epidermal growth factor receptor (EGF/EGFR) axis overactivity are known as the most important characteristics of ARPKD. Since the misregulation of $Ca^{2+}$ signaling may lead to aberrant structure and function of the collecting ducts in kidney of rat with ARPKD, present study aimed to investigate the further mechanisms of abnormal proliferation of cystic cells by inhibition of PKHD1 expression. For this, a stable PKHD1-silenced HEK-293T cell line was established. Then cell proliferation rates, intracellular $Ca^{2+}$ concentration and extracellular signal-regulated kinase 1/2 (ERK1/2) activity were assessed after treatment with EGF, a calcium channel blocker and agonist, verapamil and Bay K8644. It was found that PKHD1-silenced HEK-293T cell lines were hyperproliferative to EGF stimulation. Also PKHD1-silencing lowered the intracellular $Ca^{2+}$ and caused EGF-induced ERK1/2 overactivation in the cells. An increase of intracellular $Ca^{2+}$ in PKHD1-silenced cells repressed the EGF-dependent ERK1/2 activation and the hyperproliferative response to EGF stimulation. Thus, inhibition of PKHD1 can cause EGF-induced excessive proliferation through decreasing intracellular $Ca^{2+}$ resulting in EGF-induced ERK1/2 activation. Our results suggest that the loss of fibrocystin may lead to abnormal proliferation in kidney epithelial cells and cyst formation in ARPKD by modulation of intracellular $Ca^{2+}$.

Effect of Co Doping on the Elastocaloric Effect of Ni-Mn-Ga-Co Alloy

Haixu Qin,Youping Zheng,Liu Yang,Sibo Sun,Zhiyong Gao 한국자기학회 2023 Journal of Magnetics Vol.28 No.3

Large latent heat is produced in the stress-induced martensitic phase transition process of Ni-Mn-Ca-based materials, i.e., elastocaloric effect. That makes such materials show tremendous potential for solid-state refrigeration which is identified as one of the most promising non-vapor-compression cooling devices. However, the still low refrigeration ability of these materials restricts further commercially promoting of solid-state refrigeration. In this work, we adjusted the Co content to regulate the elastocaloric effect for the Ni51.5Mn25Ga23Co0.5. According to the results, the transformation strain and ratio of loading stress/transformation temperature (dσ/ dT) were increased by replacing the Ni atoms with a little more Co, leading to an improvement of the stressinduced transformation entropy-change ΔSσ. As a result, a huge ΔSσ of 45.0 JKg-1K-1 is achieved in Ni50Mn25- Ga23Co1 alloy.

Two-component zeolite-alumina system for toluene trapping with subsequent nonthermal plasma mineralization

Caihong Qin,Mengke Guo,Yang Zheng,Rui Yu,Jiayu Huang,Xiaoqing Dang,Dongjie Yan 한국공업화학회 2021 Journal of Industrial and Engineering Chemistry Vol.95 No.-

Two-component zeolite-alumina packed dielectric barrier discharge plasma was developed to deeplymineralize toluene. Compared with packing ZSM-5 and g-Al2O3 separately in layers, uniform mixing ofZSM-5 and g-Al2O3 was more conducive to the mineralization of adsorbed toluene in nonthermal plasma. When the mixing ratio of ZSM-5 to g-Al2O3 was 1:2, the mineralization rate reached 80% afterdischarging for 120 min. Ag supported on the catalyst surface significantly improved the selectivity ofCO2. Increased relative humidity had little effect on the mineralization of adsorbed toluene, butsignificantly reduced the byproducts O3 and N2O. The adsorption and plasma mineralizationperformance of Ag/ZSM-5-g-Al2O3 duringfive cycles of toluene adsorption was stable with only thepeak concentration of CO showing a slight upward trend. GC–MS, TG, and XPS characterization of freshand used catalysts revealed deactivation of Ag/ZSM-5-g-Al2O3 in terms of CO oxidation due tointermediate organic residues and decreased amounts of Ag+ and lattice oxygen on the support ZSM-5instead of g-Al2O3.

Diversity of Thermophilic Fungi in Tengchong Rehai National Park Revealed by ITS Nucleotide Sequence Analyses

Wen-Zheng Pan,Xiao-Wei Huang,Kang-Bi Wei,Chun-Mei Zhang,Dong-Mei Yang,Jun-Mei Ding,Ke-Qin Zhang 한국미생물학회 2010 The journal of microbiology Vol.48 No.2

The geothermal sites near neutral and alkalescent thermal springs in Tengchong Rehai National Park were examined through cultivation-dependent approach to determine the diversity of thermophilic fungi in these environments. Here, we collected soils samples in this area, plated on agar media conducive for fungal growth, obtained pure cultures, and then employed the method of internal transcribed spacer (ITS)sequencing combined with morphological analysis for identification of thermophilic fungi to the species level. In total, 102 strains were isolated and identified as Rhizomucor miehei, Chaetomium sp., Talaromyces thermophilus, Talaromyces byssochlamydoides, Thermoascus aurantiacus Miehe var. levisporus, Thermomyces lanuginosus, Scytalidium thermophilum, Malbranchea flava, Myceliophthora sp. 1, Myceliophthora sp. 2,Myceliophthora sp. 3, and Coprinopsis sp. Two species, T. lanuginosus and S. thermophilum were the dominant species, representing 34.78% and 28.26% of the sample, respectively. Our results indicated a greater diversity of thermophilic fungi in neutral and alkaline geothermal sites than acidic sites around hot springs reported in previous studies. Most of our strains thrived at alkaline growth conditions.

Influence of heat treatment on the wear life of hydraulic fracturing tools

Chao Zheng,Yonghong Liu,Hanxiang Wang,Jie Qin,Yang Shen,Shihong Zhang 대한기계학회 2017 JOURNAL OF MECHANICAL SCIENCE AND TECHNOLOGY Vol.31 No.2

Wear phenomenon has caused severe damage or failure of fracturing tools in oil and gas industry. In this paper, influence of heat treatment on the mechanical properties and wear resistance of fracturing tool made of lamellar graphite grey cast iron were investigated. The surface composition and microstructure were characterized by X-ray diffraction (XRD) and metallographic microscope. Sliding wear tests were performed to study the tribological behavior. Tests results showed that wear rates of treated specimens decreased by 33 %. Besides, worn morphology and wear debris were analyzed using Scanning electron microscope (SEM) and Energy dispersive Xray spectra (EDS). Wear failure mechanisms of specimens were identified. Furthermore, on-site experiment results indicated that wear loss of treated samples decreased by 37.5 %. The wear life of hydraulic fracturing tools can be improved obviously by the heat treatment.