Molecular identification of archaic bones as a native Korean black bear: implications for the ongoing bear restoration program

현지연,김태욱,Puneet Pandey,김경석,정승준,강재구,공달용,정승호,정호권,한상훈,한상현,이항 한국통합생물학회 2022 Animal cells and systems Vol.26 No.5

The genetic investigation of the archeological or museum samples, including endangered species, provides vital information necessary to plan, implement, and revisit conservation strategies. In South Korea, the Asian black bear went almost extinct in wild by 2002, without leaving any authentic specimens representing the native population. Recently researchers found a set of animal bones in a natural cave in Mt. Taebaek (South Korea), suspected to be of a bear. In the present study, we undertook a molecular investigation and radiocarbon dating to establish the species’ identity, phylogenetic position, and approximate age of the recovered specimen. The genetic investigation (CytB, COI, D-loop, SRY, and ZFX-ZFY) identified the sample as a male Asian black bear with close phylogenetic affinity with Northeast Asian bears. Radiocarbon dating estimated the bones to be aged 1800–1942 calAD. These findings indicate that the bone specimens found in the natural cave in Mt. Taebaek were from an individual that naturally inhabited South Korea long before the importing of farm bears (the 1980s) and initiation of wild population restoration (2004). The present study provides the first genetic information record of the native South Korean black bear. Our findings reaffirm the appropriateness of the ongoing bear restoration program in South Korea, with the reintroduction of individuals from North Korea and Russia.

Temporal Variation in Tiger Population in a Semi-Arid Habitat in India

Singh, Randeep,Pandey, Puneet,Qureshi, Qamar,Sankar, Kalyanasundaram,Krausman, Paul R.,Goyal, Surendra Prakash National Institute of Ecology 2022 국립생태원회보(PNIE) Vol.3 No.3

Understanding temporal variations in wildlife populations is a prerequisite for conservation planning of wide-ranging species such as tigers (Panthera tigris). We determined the temporal variation in abundance, population growth, and sex ratios at different age and sex stages for a tiger population in Ranthambhore Tiger Reserve, India from November 2007 to February 2011 using motion-sensing cameras. We identified 19 male and 21 female tigers from stripe patterns during 16,110 trap nights within an area covering 233 km². The annual abundance of the population varied from 34.9 (mean)±3.8 (SE) to 23.9±1.5, with a declining trend in the mean annual change of abundance (-12%). The density of adult females remained stable across the study duration, but the densities of adult males and non-breeding tigers fluctuated. The sex ratio was female-biased (0.58 males/female) for breeding tigers and male-biased (1.74 males/female) for non-breeding tigers. Our results reinforce the importance of long-term studies for monitoring the naturally occurring processes in populations to develop population indicators and identify reliable baseline information for conservation and management planning of populations.

Estimating Population Density of Leopards in Semi-Arid habitat, Western India

Randeep Singh,Puneet Pandey,Qamar Qureshi,Kalyanasundaram Sankar,Paul R. Krausman,Surendra Prakash Goyal National Institute of Ecology 2023 국립생태원회보(PNIE) Vol.4 No.2

The leopard (Panthera pardus) is one of the most widespread felids worldwide. Despite their wide distribution, reliable data on leopard population densities are still inadequate for conservation and management strategies in different landscapes. In the present study, we estimated leopard density using camera traps in the Ranthambhore Tiger Reserve (RTR), Rajasthan, India, between December 2010 and February 2011, where leopards coexist alongside a high density of tigers (Panthera tigris), a larger predator (RTR). A sampling effort of 4,450 trap days was made from 178 camera trapping stations over 75 days, resulting in 46 suitable photo captures (25 right flanks and 21 left flanks). In total, 18 individuals (7 males, 8 females, and 3 unknown sexes) were identified using the right flanks, and the estimated leopard density was 8.8 (standard error=2.8) individuals/100 km². Leopard density appeared to respond to small prey (<50 kg weight) richness. As this is the first systematic study to provide baseline information on leopard density in RTR, it could form a baseline for comparison in future investigations.

Modeling the Spatial Distribution of Black-Necked Cranes in Ladakh Using Maximum Entropy

Meenakshi Chauhan,Randeep Singh,Puneet Pandey National Institute of Ecology 2023 국립생태원회보(PNIE) Vol.4 No.2

The Tibetan Plateau is home to the only alpine crane species, the black-necked crane (Grus nigricollis). Conservation efforts are severely hampered by a lack of knowledge on the spatial distribution and breeding habitats of this species. The ecological niche modeling framework used to predict the spatial distribution of this species, based on the maximum entropy and occurrence record data, allowed us to generate a species-specific spatial distribution map in Ladakh, Trans-Himalaya, India. The model was created by assimilating species occurrence data from 486 geographical sites with 24 topographic and bioclimatic variables. Fourteen variables helped forecast the distribution of black-necked cranes by 96.2%. The area under the curve score for the model training data was high (0.98), indicating the accuracy and predictive performance of the model. Of the total study area, the areas with high and moderate habitat suitability for black-necked cranes were anticipated to be 8,156 km² and 6,759 km², respectively. The area with high habitat suitability within the protected areas was 5,335 km². The spatial distribution predicted using our model showed that the majority of speculated conservation areas bordered the existing protected areas of the Changthang Wildlife Sanctuary. Hence, we believe, that by increasing the current study area, we can account for these gaps in conservation areas, more effectively.

Metagenomics Analysis of Thrombus Samples Retrieved from Mechanical Thrombectomy

Vajpeyee Atulabh,Chauhan Puneet Singh,Pandey Swapnil,Tiwari Shivam,Yadav Lokendra Bahadur,Shroti Akhilesh Kumar,Vajpeyee Manisha 대한신경중재치료의학회 2021 Neurointervention Vol.16 No.1

Purpose: The purpose of this study was to assess the microbiota in middle cerebral artery thrombi retrieved in mechanical thrombectomy arising out of symptomatic carotid plaque within 6 hours of acute ischemic stroke. Thrombi were subjected to next-generation sequencing for a bacterial signature to determine their role in atherosclerosis.Materials and Methods: We included 4 human middle cerebral artery thrombus samples (all patients were male). The median age for the patients was 51±13.6 years. Patients enrolled in the study from Pacific Medical University and Hospital underwent mechanical thrombectomy in the stroke window period. All patients underwent brain magnetic resonance angiography (MRA) and circle of Willis and neck vessel MRA along with the standard stroke workup to establish stroke etiology. Only patients with symptomatic carotid stenosis and tandem lesions with ipsilateral middle cerebral artery occlusion were included in the study. Thrombus samples were collected, stored at –80 degrees, and subjected to metagenomics analysis.Results: Of the 4 patients undergoing thrombectomy for diagnosis with ischemic stroke, all thrombi recovered for bacterial DNA in qPCR were positive. More than 27 bacteria were present in the 4 thrombus samples. The majority of bacteria were <i>Lactobacillus, Stenotrophomonas, Pseudomonas, Staphylococcus</i>, and <i>Finegoldia</i>.Conclusion: Genesis of symptomatic atherosclerotic carotid plaque leading to thromboembolism could be either due to direct mechanisms like acidification and local inflammation of plaque milieu with lactobacillus, biofilm dispersion leading to inflammation like with pseudomonas fluorescence, or enterococci or indirect mechanisms like Toll 2 like signaling by gut microbiota.

Does Visitation Dictate Animal Welfare in Captivity? : A Case Study of Tigers and Leopards from National Zoological Park, New Delhi

Gupta, Avni,Vashisth, Saurabh,Sharma, Mahima,Hore, Upamanyu,Lee, Hang,Pandey, Puneet National Institute of Ecology 2022 Proceedings of NIE Vol.3 No.2

Zoological Parks house exclusive animal species, thus creating a source of education and awareness for visitors. Big cats like tigers and leopards are among the most visited species in zoos globally. However, they often display stressful or stereotypic behaviours. Such behaviours are influenced by multiple factors including visitors, animal history, and captive environment. To understand this impact, we investigated the behavioural response of tigers and leopards to visitation, captive, and biological factors. The behaviour of eight big cats housed in the National Zoological Park, New Delhi, was monitored using focal sampling technique during May and June 2019. We recorded the captive and biological factors and visitor density for the subjects. The study revealed high proportions of inactive and stereotypic behaviours amongst the species. Tigers and leopards were found to perform stereotypic behaviours for 22% and 28% of their time, respectively. Generalised Linear Models revealed a significant variation of stereotypy in association with the factors. Stereotypy was influenced by visitor density, age, sex, breeding history, coat colour, and enclosure design. Adults, males, white-coated, previously bred, and those housed in smaller and simple enclosures display more stereotypy than young, females, normal-coated, unbred, and those housed in larger and complex enclosures, respectively. A high density of visitors induced more stereotypic behaviours amongst the big cats. As providing entertainment and awareness amongst the public is one of the fundamental objectives of the zoo, visitors can not be avoided. Thus, we suggest providing appropriate enrichments that would reduce stereotypies and promote naturalistic behaviours.