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참나무류 종실 9종의 영양성분 및 항산화 기능성 물질 비교 분석
Donghwan Shim,Sang Urk Han,Il Hwan Lee,Jinjoong Kim,Youngki Park 한국약용작물학회 2017 한국약용작물학술대회 발표집 Vol.2017 No.05
Background : Native oak tree species dominated the deciduous forests of South Korea. The acorns of them represent the main food source for wildlife species as well as human being, and they have 28 species. We analyzed and compared to the antioxidants including total phenolics and functional nutrients components among the acorns of nine kinds of oak trees (Quercus acutissima, Q. aliena, Q. mongolica, Q. variabilis, Q. serrata, Q, palustris, Q. rubra, Q. glauca, and Q. acuta). Methods and Results : Acorns were collected from each tree species, which were grown in a seed orchard. Contents of both total phenolic content (TPC) in acorns of Q. serrata were higher than others. Interestingly, Q. serrata contained the highest amount of water soluble tannins and the lowest levels of water insoluble tannins among 9 oak species, resulting that acorns of Q. serrata had the lowest proportion of insoluble tannins. Among 9 oak species tested, Q. aliena acorns contained the highest levels of total flavonoids content (TFC). Conclusion : Our result showed that nutritional composition of acorns was significantly different between oak species, indicating that tastes or nutritional values might be different as well among major oak species in Korea.
고염과 건조 스트레스 처리 조건 동안 양초 유식물체의 항산화효소 활성 분석
심동환(Donghwan Shim),남기정(Ki Jung Nam),김윤희(Yun-Hee Kim) 한국생명과학회 2018 생명과학회지 Vol.28 No.7
본 연구에서는 화본과 다년생 식물인 양초의 환경 스트레스에 대한 적응 기작을 이해하기 위해, 과산화수소를 제거하는 주요 항산화효소인 peroxidase (POD), ascorbate peroxidase (APX) 및 catalase (CAT) 활성의 변화를 고염과 건조 스트레스 조건에서 조사하였다. 300 mM 이상의 NaCl과 40% PEG 처리에서 양초 유식물체의 지상부와 지하부의 생장이 크게 감소하였다. 항산화효소 수준은 양초 유식물체의 지상부에서 CAT 활성이 높았지만, APX와 POD는 지하부에서 높은 활성 수준을 보였다. 실제로 NaCl과 PEG 처리동안 APX 활성은 지상부와 지하부가 모두 증가하였으며, CAT 활성은 지상부만 증가하였다. 또한 고염 조건에서 양초식물체의 지상부와 지하부 모두에서 전체페놀 함량이 증가하였다. 본 연구의 결과로서, 양초의 유식물체의 지상부 및 지하부의 생장이 과산화수소를 제거하는 항산화효소활성에 의해 조절됨을 알 수 있었으며, 이는 뿌리에서 APX 활성의 증가 및 지상부에서 CAT 활성증가와 같은 효소활성의 조직 특이적 증가에 영향을 받음을 알 수 있다. 본 연구의 결과는 전형적인 사막지역을 포함하는 고염 지역에서 양초 유식물체의 생장을 위해 항산화 방어기작이 중요함을 의미하는 바이다. To understand the adaptability of Leymus chinensis forage grass to environmental stresses, we analyzed the H₂O₂ scavenging activity based on several antioxidant enzymes and total phenolics content, including peroxidase (POD), ascorbate peroxidase (APX), and catalase (CAT), in shoots and roots subjected to salt and dehydration stresses during seedling growth. After NaCl or PEG treatment, plants showed reduced seedling growth under over 200 mM NaCl or 30% PEG treatment condition in shoots and roots compared with the control condition. In addition, plants showed high enzymatic activity of CAT in the shoots, whereas they exhibited high activity levels of APX and POD in the roots in both the NaCl and PEG treatment conditions. These results seem to indicate that Leymus chinensis seedlings responding to salt and dehydration stresses during initial growth is associated with enhanced activity of H₂O₂ scavenging antioxidant enzymes in the shoots or roots. The plants also showed high levels of total phenolics under NaCl treatment, with a high concentration in both the shoots and roots. Our results showed that the induced activity patterns of APX in the roots and CAT in the shoots indicate that low H₂O₂ levels were mainly maintained through tissue-specific redox homeostasis involving enzymes such as APX and CAT during salt and dehydration stresses. This study highlights the importance of antioxidant enzymes in the establishment of Leymus chinensis seedlings under high salinity conditions, such as typical desertification.
The Complete Chloroplast Genome of Capsicum frutescens L.
Jung-Ro Lee,Donghwan Shim,Gi-An Lee,Sebastin Raveendar,Na-Young Ro,Young-Ah Jeon,Yang-Hee Cho,Kyung-Ho Ma,Sok-Young Lee,Jong-Wook Jeong 한국육종학회 2015 한국육종학회 심포지엄 Vol.2015 No.07
The chloroplast (cp) is an organelle with its own genome encoding a number of cp-specific components. The membrane-bound organelles are mainly involved in the photosynthetic conversion of atmospheric CO2 into carbohydrates in which light energy is stored as chemical energy. Resequencing technology via next-generation sequencing has recently been successfully applied which results the field of cp genome characterization is growing fast. Here, we report the complete sequence of the chloroplast genome of Capsicum frutescens, a species of chili pepper. The total length of the genome is 156,817 bp, and the overall GC content is 37.7%. A pair of 51,584-bp inverted repeats (IRs) is separated by a small (17,853 bp) and a large (87,380 bp) single-copy region. The C. frutescens chloroplast genome encodes 103 unique genes, including 79 protein-coding genes, 20 tRNA genes, and four rRNA genes. Of these, 19 genes are duplicated in the IRs and 18 genes contain one or two introns. Comparative analysis with reference cp genome revealed 125 simple sequence repeat (SSR) motif and 34 variants, mostly located in the non-coding regions. These microsatellite markers will facilitate the studies of genetic diversity, population genetic structure, and sustainable conservation for C. frutescens.
Transcriptome changes of rice(Oryza sativa L.) in oil accumulation at the early milky stage
Win Htet Oo,Tae-Sung Kim,Donghwan Shim,Beom-Seok Park,Yong-Jin Park 한국육종학회 2015 한국육종학회 심포지엄 Vol.2015 No.07
Rice bran has been reckoned as a potential source of edible oil contained 15-20 % of oil, in its natural state, also contains several constituents of potential significance in diet and health. Interest has focused primarily upon gamma-oryzanol, tocotrienols, and tocopherols, all of which demonstrate antioxidant properties. We analyzed the transcriptome profiles for rice grain from high and low oil content lines at the early milky stage using the Illumina sequencing method. This analysis indicated that many transcripts showed different expressions level between high and low oil content rice. The functional classification of those genes indicated their connection with various metabolic pathways, oil transport, signal transduction, transcriptional regulation, and other processes. The results obtained here will enable to understand how changes in oil concentration or availability are interpreted into adaptive responses in early milky stage of rice. Based on the functional annotation of the differentially expressed genes, the possible processes that regulate these expressed transcripts in rice grain was further analyzed. The candidate transcripts may provide genetic resources that may be useful in the improvement of oil contents of rice.
The complete chloroplast genome of Capsicum annuum var. glabriusculum using Illumina sequencing
Sebastin Raveendar,Jung-Ro Lee,Donghwan Shim,Kyung Jun Lee,Kyung-Ho Ma,Sok-Young Lee,Jong-Wook Chung 한국육종학회 2015 한국육종학회 심포지엄 Vol.2015 No.07
Chloroplast (cp) genome sequences provide a valuable source for DNA barcoding. Molecular phylogenetic studies have concentrated on DNA sequencing of conserved gene loci. However, this approach is time consuming and more difficult to implement when gene organization differs among species. Here we report the complete re-sequencing of the cp genome of Capsicum pepper (Capsicum annuum var. glabriusculum) using the Illumina platform. The total length of the cp genome is 156,817 bp with a 37.7% overall GC content. A pair of inverted repeats (IRs) of 50,284 bp were separated by a small single copy (SSC; 18,948 bp) and a large single copy (LSC; 87,446 bp). The number of cp genes in C. annuum var. glabriusculum is the same as that in other Capsicum species. Variations in the lengths of LSC, SSC and IR regions were the main contributors to the size variation in the cp genome of this species. A total of 125 simple sequence repeat (SSR) and 48 insertions or deletions variants were found by sequence alignment of Capsicum cp genome. These findings provide a foundation for further investigation of cp genome evolution in Capsicum and other higher plants.