Complete chloroplast genome sequences of Solanum commersonii and its application to chloroplast genotype in somatic hybrids with Solanum tuberosum

Cho, K. S.,Cheon, K. S.,Hong, S. Y.,Cho, J. H.,Im, J. S.,Mekapogu, M.,Yu, Y. S.,Park, T. H. Springer International 2016 Plant cell reports Vol. No.

<P>Chloroplast genome of Solanum commersonii and S olanum tuberosum were completely sequenced, and Indel markers were successfully applied to distinguish chlorotypes demonstrating the chloroplast genome was randomly distributed during protoplast fusion. Somatic hybridization has been widely employed for the introgression of resistance to several diseases from wild Solanum species to overcome sexual barriers in potato breeding. Solanum commersonii is a major resource used as a parent line in somatic hybridization to improve bacterial wilt resistance in interspecies transfer to cultivated potato (S. tuberosum). Here, we sequenced the complete chloroplast genomes of Lz3.2 (S. commersonii) and S. tuberosum (PT56), which were used to develop fusion products, then compared them with those of five members of the Solanaceae family, S. tuberosum, Capsicum annum, S. lycopersicum, S. bulbocastanum and S. nigrum and Coffea arabica as an out-group. We then developed Indel markers for application in chloroplast genotyping. The complete chloroplast genome of Lz3.2 is composed of 155,525 bp, which is larger than the PT56 genome with 155,296 bp. Gene content, order and orientation of the S. commersonii chloroplast genome were highly conserved with those of other Solanaceae species, and the phylogenetic tree revealed that S. commersonii is located within the same node of S. tuberosum. However, sequence alignment revealed nine Indels between S. commersonii and S. tuberosum in their chloroplast genomes, allowing two Indel markers to be developed. The markers could distinguish the two species and were successfully applied to chloroplast genotyping (chlorotype) in somatic hybrids and their progenies. The results obtained in this study confirmed the random distribution of the chloroplast genome during protoplast fusion and its maternal inheritance and can be applied to select proper plastid genotypes in potato breeding program.</P>

국내 Human Immunodeficiency virus(HIV) 감염의 역학 및 면역학적 특성

신영오,장영식,허숙진,기미경,김성순,최병선,최민호,전원경,채권석,이영종 국립보건연구원 1994 국립보건원보 Vol.31 No.1

Inactivation of foodborne pathogens in powdered red pepper (Capsicum annuum L.) using combined UV-C irradiation and mild heat treatment

Cheon, H.L.,Shin, J.Y.,Park, K.H.,Chung, M.S.,Kang, D.H. Butterworths ; Taylor Francis ; Elsevier Science 2015 Food Control Vol.50 No.-

This study was performed to investigate the effectiveness of combined ultraviolet (UV-C) irradiation and mild heating as an alternative to conventional inactivation of foodborne pathogens, including Escherichia coli O157:H7 and Salmonella Typhimurium on powdered red pepper. A cocktail of three strains of E. coli O157:H7 ATCC 35150, ATCC 43889, ATCC 43890) and S. Typhimurium (ATCC 19585, ATCC 43971, DT 104) was inoculated onto powdered red pepper and then treated with UV-C irradiation and mild heat. A constant UV intensity (3.40 mW/cm<SUP>2</SUP>) of the emitting lamps was applied to samples for 5, and 10 min at 25, 35, 45, 55, and 65 <SUP>o</SUP>C, respectively. Also, quality change of powdered red pepper was measured in order to identify the efficiency of combined treatment. The reduction levels of E. coli O157:H7 and S. Typhimurium on powdered red pepper when treated with UV-C irradiation alone at 20.4 kJ/m<SUP>2</SUP> for 10 min was 0.22 and 0.29 log CFU/g, respectively. While, combined treatment with mild heating at 65 <SUP>o</SUP>C reduced the surviving numbers of each pathogens by 2.88 and 3.06 log CFU/g, respectively. Although the inactivation efficiency was influenced less by the UV-C radiation dose, the synergistic effect was observed with increasing temperature and UV-C radiation dose. CIE color value and extractable color value were not significantly (P > 0.05) different between non-treated and combination treated samples. The moisture and capsaicinoids contents showed significant (P < 0.05) differences when treated at 65 <SUP>o</SUP>C because of sample drying during heat treatment. Therefore, these results suggest that UV-C irradiation combined with mild heating can be utilized by the food industry in order to effectively inactivate E. coli O157:H7 and S. Typhimurium without incurring quality deterioration of powdered red pepper.

Isoflurane Postconditioning Inhibits tPA-Induced Matrix Metalloproteinases Activation After Hypoxic Injury via Low-Density Lipoprotein Receptor-Related Protein and Extracellular Signal-Regulated Kinase Pathway

Kim, S. Y.,Cheon, S. Y.,Kim, E. J.,Lee, J. H.,Kam, E. H.,Kim, J. M.,Park, M.,Koo, B. N. Springer Science + Business Media 2017 Neurochem Res Vol.42 No.5

<P>Tissue plasminogen activator (tPA) is the only recommended pharmacological treatment for acute ischemic stroke. However, tPA can induce intracerebral hemorrhage by blood-brain barrier breakdown through an increase in matrix metalloproteinases (MMPs). Previously, we showed that isoflurane postconditioning reduced intracranial hemorrhage following tPA treatment after cerebral ischemia. Here, we investigated the mechanism by which isoflurane postconditioning reduces tPA-induced MMP-2 and MMP-9 activation following hypoxia/reoxygenation (H/R) in brain endothelial cells. Mouse brain endothelial cells (bEnd.3) were exposed to 6 h of oxygen-glucose deprivation and 3 h of reoxygenation with tPA. Cells were treated with isoflurane for 1 h of the reoxygenation condition and the effect of isoflurane postconditioning on MMP-2 and MMP-9 activation was assessed. Involvement of low-density lipoprotein receptor-related protein (LRP), which is a receptor for tPA, and the extracellular signal-regulated kinase (ERK) and NF-kappa B pathway in isoflurane postconditioning was assessed using LRP inhibitor (receptor-associated protein, RAP) and ERK-1/2 inhibitor (PD98059). Isoflurane postconditioning decreased tPA-induced MMP-2 and MMP-9 activation under H/R. tPA treatment under H/R increased expression of LRP and the active form of NF-kappa B. Isoflurane postconditioning suppressed LRP expression, increased ERK-1/2 activation, and suppressed MMP-2 and MMP-9 activation, comparable to the effect of RAP. Activation of ERK-1/2, inhibition of NF-kappa B activation, and suppression of MMP-2 and MMP-9 activation by isoflurane postconditioning were abolished with PD98059 treatment. These finding indicate that isoflurane postconditioning inhibits tPA-induced MMP-2 and MMP-9 activation following H/R via the LRP/ERK/NF-kappa B pathway in bEnd.3.</P>

Monitoring of atmospheric reduced sulfur compounds and their oxidation in two coastal landfill areas

Song, S.-K.,Shon, Z.-H.,Kim, K.-H.,Cheon Kim, S.,Kim, Y.-K.,Kim, J.-K. Pergamon Press ; Elsevier [distribution] 2007 Atmospheric environment Vol.41 No.5

In this study, the distribution characteristics of reduced sulfur compounds (RSCs) in ambient air were investigated in two coastal landfill (LF) facilities and their surrounding areas. The photochemical conversion of RSCs to sulfur dioxide (SO<SUB>2</SUB>) was also evaluated using a photochemical box model (PCBM). Measurements of RSCs were carried out from both in and around areas of two coastal LFs in Gunsan (G) and Donghae (D) city, Korea during several field campaigns (May through December 2004). The dominant RSCs at the Gunsan landfill (G-LF) were found to be DMS and H<SUB>2</SUB>S, whereas those at the Donghae landfill (D-LF) were H<SUB>2</SUB>S and DMDS. The concentrations of DMS at these study sites were likely to be affected not only by LF processes but also by an oceanic source, while such a pattern was more prominent at the D-LF. The chemical species of RSCs that can exert significant influences on the photochemical production of SO<SUB>2</SUB> in the LF environment were identified to be H<SUB>2</SUB>S, DMS, or DMDS.

Optimization of batch dilute-acid hydrolysis for biohydrogen production from red algal biomass

Park, J.H.,Cheon, H.C.,Yoon, J.J.,Park, H.D.,Kim, S.H. Pergamon Press ; Elsevier Science Ltd 2013 INTERNATIONAL JOURNAL OF HYDROGEN ENERGY - Vol.38 No.14

Marine algae are promising alternative sources for bioenergy including hydrogen. Their polymeric structure, however, requires a pretreatment such as dilute-acid hydrolysis prior to fermentation. This study aimed to optimize the control variables of batch dilute-acid hydrolysis for dark hydrogen fermentation of algal biomass. The powder of Gelidium amansii was hydrolyzed at temperatures of 120-180 <SUP>o</SUP>C, solid/liquid (S/L) ratios of 5-15% (w/v), and H<SUB>2</SUB>SO<SUB>4</SUB> concentrations of 0.5-1.5% (w/w), and then fed to batch hydrogen fermentation. Among the three control variables, hydrolysis temperature was the most significant for hydrogen production as well as for hydrolysis efficiency. The maximum hydrogen production performance of 0.51 L H<SUB>2</SUB>/L/hr and 37.0 mL H<SUB>2</SUB>/g dry biomass was found at 161-164 <SUP>o</SUP>C hydrolysis temperature, 12.7-14.1% S/L ratio, and 0.50% H<SUB>2</SUB>SO<SUB>4</SUB>. The optimized dilute-acid hydrolysis would enhance the feasibility of the red algal biomass as a suitable substrate for hydrogen fermentation.

200 GeV/핵자 유황이온과 핵건판핵의 충돌에 의해 생성된 헬륨 파쇄핵의 극한파쇄 연구

김동철,송진섭,윤천실,정성헌,박인곤,김종오,김철수,김태연,이승희,조재희,천병구,김재률,김준원,김태익,박명렬,장한일,임인택 慶尙大學校 기초과학연구소 1992 基礎科學硏究所報 Vol.8 No.-

고에너지 중이온 원자핵과 핵건판의 충돌에서, 200GeV/핵자 유황이온에 의해 생성된 파쇄 헬륨핵(Z=2)의 실험실계의 방출각 분포는 표적핵에 무관한 회귀공식. dN=exp[a+k exp(η-y_b)]d[exp(η-y_b)]로 잘 표현된다. 여기에서 의사신속도 η=-ln[tan(θ/2)]이고, y_b는 실험실계의 입사입자(^32S)의 신속도이다. 이 공식에 의한 적합에서 k=-0.057±0.008로 얻어진다. 즉, 핵건판과 고에너지 중이온의 충돌에서 파쇄 헬륨핵의 exp(η-y_b)의 분포는 "극한파쇄" 현상을 잘 설명하고 있다. The angular distribution of emission angle θ of helium (Z=2) produced in the collisions of incident particles of 200 GeV/nucleon ^32S in nuclear emulsion is well expressed by dN=exp[a+k exp(η-y_b)]d[exp(η-y_b)] where the pseudorapidity is η=-ln[tan(θ/2)], the laboratory system primary rapidity is y_b, and k=-0.057+0.008. The shape of this frequency of occurrence distributions in terms of exp(η-y_b) attests to the validity of the concept of "limiting fragmentation" for helium projectile fragments produced in the projectile fragmentation regions of heavy ion collisions in nuclear emulsion.

Some combinatorial applications of the q-Riordan matrix

Cheon, G.S.,Jung, J.H. North Holland [etc.] 2015 Linear algebra and its applications Vol.482 No.-

Recently, the authors developed a q-analogue for Riordan matrices by means of Eulerian generating functions of the form g(z)=@?<SUB>n≥0</SUB>g<SUB>n</SUB>z<SUP>n</SUP>/n!<SUB>q</SUB> where n!<SUB>q</SUB> is the q-factorial. We apply this concept to give q-analogues of some familiar objects from the set partitions with double restrictions on blocks, namely the (r,s)-Bessel numbers of both types. By setting r=0 and letting s→~, these numbers may be reduced to the q-Stirling numbers of both kinds. Several algebraic formulas for the q-analogues are also derived using combinatorial methods together with the concept of q-Riordan matrices. In particular, q-analogues of the classical Bessel numbers of both kinds and their combinatorial interpretations are obtained.

백시니아 바이러스의 세포배양체계의 확립

천두성,지영미,김기순,안정배,이선화,윤재득,조해월 국립보건연구원 2000 국립보건원보 Vol.37 No.-

P-gp Inhibition by XL019, a JAK2 Inhibitor, Increases Apoptosis of Vincristine-treated Resistant KBV20C Cells with Increased p21 and pH2AX Expression

Cheon, J. H.,Kim, J. Y.,Lee, B.-M.,Kim, H. S.,Yoon, S. INTERNATIONAL INSTITUTE OF ANTICANCER RESEARCH 2017 Anticancer research Vol.37 No.12

<P>The present study was designed to identify conditions that could increase the sensitivity of resistant cancer cells to antimitotic drugs. We investigated whether a Janus kinase 2 (JAK2) inhibitor used in clinical trials, XL019, sensitizes antimitotic drug-resistant KBV20C cells. XL019 reduced cellular viability and increased apoptosis in vincristine-treated KBV20C cells, independently of the JAK/signal transducer and activator of transcription (STAT) pathway. Based on the ATP-binding cassette protein B1 [ABCB1, P-glycoprotein (P-gp)] inhibitory assay, we demonstrated that XL019 functions as a P-gp inhibitor in drug-resistant KBV20C cells. Considering that another JAK2 inhibitor, CEP-33779, also inhibited P-gp and sensitized drug-resistant cancer cells in a previous study, we concluded that JAK2 inhibitors can be used as P-gp inhibitors in drug-resistant cancer cells. Fluorescence-activated cell sorting, western blot, and annexin V analyses were used to further investigate the mechanism of action of XL019 in vincristine-treated KBV20C cells. XL019 induced early apoptosis of KBV20C cells in response to vincristine treatment via increased G(2) phase arrest. Moreover, G(2) phase arrest and apoptosis of cells co-treated with vincristine and XL019 resulted from the up-regulation of phosphorylated retinoblastoma protein (pRb), p21, and the DNA-damage protein, phosphorylated H2A histone family, member X (pH2AX). Additionally, the P-gp-inhibitory effect of XL019 was less than that of CEP-33779, and a more than 2-fold higher dose was required to sensitize vincristine-treated KBV20C cells. Furthermore, lower doses of XL019 were required to sensitize KBV20C cells to a degree similar to that obtained with the established P-gp inhibitor verapamil, suggesting that XL019 has higher specificity than verapamil. Our results showed that JAK2 inhibitors inhibited P-gp action via a direct binding mechanism, which was similar to that of verapamil. These findings indicate that JAK2 inhibitors may be promising therapeutics for the treatment of cancer that is resistant to antimitotic drugs.</P>