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Kim, Sangwan,Lee, Sunjong,Ahn, Yejin,Kim, Hyun Ki,Koh, Joonseok,Kim, Sung Dong,Kim, Bong-Gi The Royal Society of Chemistry 2017 Journal of Materials Chemistry C Vol.5 No.33
<▼1><P>A polydiacetylene-based colorimetric sensor was devised to detect malondialdehyde as a food spoilage indicator.</P></▼1><▼2><P>A colorimetric chemosensor adopting polydiacetylene derivatives was rationally designed to detect malondialdehyde (MDA) as a potential food spoilage indicator. A newly developed diacetylene monomer containing an active methylene group effectively reacted with the aldehyde units of the MDA molecule <I>via</I> Knoevenagel-type condensation and resulted in a CC bond, judging from the results of FT-IR spectroscopy. When the monomer was incorporated into polydiacetylene liposomes, they exhibited a strong change in color from blue to red in the presence of MDA molecules, even though their sensitivity was partly affected by the feed ratio of the applied diacetylene monomers during liposome preparation. In addition, it was verified that the devised MDA chemosensor selectively responded to the divalent MDA, rather than the monovalent butanal. The detection limit of the optimized MDA chemosensor was about 250 μM in solution, but when a film-type MDA chemosensor was fabricated through the accumulation of the liposomes on top of a nylon membrane and then applied, the detection limit improved dramatically, reaching down to 10 μM at room temperature, even by judging the change in color with the naked eye. To confirm that the change of the resulting Hue angle can reflect the detection sensitivity of the MDA chemosensor under different experimental conditions, CIELAB analysis was conducted with the film-type MDA sensor. The results indicated that the Hue angle changed according to the MDA concentration, and the resulting slope can be quantitatively correlated with the sensitivity of the colorimetric detection system.</P></▼2>
Analysis of current drift on p-channel pH-Sensitive SiNW ISFET by capacitance measurement
Kim, Sihyun,Kwon, Dae Woong,Kim, Sangwan,Lee, Ryoongbin,Kim, Tae-Hyeon,Mo, Hyun-Sun,Kim, Dae Hwan,Park, Byung-Gook ELSEVIER 2018 CURRENT APPLIED PHYSICS Vol.18 No.supp
<P>The mechanism of drift effect in pH-sensitive silicon nanowire (SiNW) ion sensitive field effect transistor (ISFET) is comprehensively studied by measuring the time-dependent drain current (I-D) and the gate capacitance (C-G) under different liquid-gate biases (V(LG)s) and pH levels. It was revealed that the origin of the current drift can be divided into three different mechanisms; the bulk ionic diffusion in sensing insulator, the chemical modification of insulator surface, and the oxide etch process induced by hydroxide (OH-) ion. Based on the V-LG/pH dependency of current drift and the transient C-G variation, it is clearly recognized that the drift of n-type SiNW (n-SiNW) ISFET results from H+ thorn diffusion in the insulator, whereas that of p-type SiNW (p-SiNW) ISFET is caused by temporal chemical modification (hydration) of the insulator, along with the oxide thickness (t(ox)) reduction by OH- ions. (C) 2017 Elsevier B.V. All rights reserved.</P>
김직수(Jik-Soo Kim),김석규(Seok-Kyoo Kim),김상완(Sangwan Kim),노승우(Seungwoo Rho),김서영(Seoyoung Kim),황순욱(Soonwook Hwang) 한국정보과학회 2014 정보과학회 컴퓨팅의 실제 논문지 Vol.20 No.7
본 논문에서는 대규모의 배치(Batch) 작업들을 효율적으로 수행할 수 있는 파일럿 작업(Pilot-Job) 기반의 멀티레벨 스케줄링(Multi-level Scheduling) 기법(로컬 배치스케줄러를 통한 에이전트 실행으로써 자원을 확보하고, 작업들은 별도의 큐를 통해 배포 및 실행함)에 대해서 소개하고 이의 장단점을 분석한다. 파일럿 작업에 기반한 효율적인 자원 관리 및 작업 스케줄링을 통해 멀티레벨 스케줄링 기법은 작업성공률의 향상, 자원 활용의 극대화, 동적 자원 할당?재분배 기능, 다양한 워크로드의 지원 등 많은 장점을 가지고 있다. 본 논문에서는 KISTI에서 연구/개발한 국가슈퍼컴퓨팅 인프라 기반의 HTCaaS 시스템을 통해 이러한 기법의 효과를 실험적으로 확인할 수 있었다. In this paper, we introduce the concept of pilot-job based multi-level scheduling mechanism(where existing batch schedulers are utilized for submitting pilot-jobs and each pilot-job bypasses the batch scheduler and directly contacts the job queue) which can efficiently execute ensemble of batch jobs and present detailed analysis of the mechanism. By employing multi-level scheduling mechanism, we can effectively improve the task sustainability and the resource utilization, employ dynamic resource allocation, and support various scientific workloads. We experimentally prove the effectiveness of the multi-level scheduling mechanism based on our HTCaaS system which can leverage distributed national supercomputing infrastructures in Korea.
김석규(Seok-kyoo Kim),김직수(Jik-Soo Kim),김상완(Sangwan Kim),노승우(Seungwoo Rho),김서영(Seoyoung Kim),황순욱(Soonwook Hwang) 한국콘텐츠학회 2014 한국콘텐츠학회논문지 Vol.14 No.5
슈퍼컴퓨팅 자원들은 주로 MPI와 같은 메시지 교환 인터페이스에 기반한 통신 집적도가 높은 고성능 컴퓨팅(HPC: High Performance Computing)응용 분야를 지원하는데 활용되어 왔다. 반면에, 대규모 계산처리 컴퓨팅(HTC: High Throughput Computing)방식의 패러다임은 주로 계산 집적도가 높고(상대적으로 적은 I/O연산),독립적인(작업들 간의 통신이 적음)많은 수의 작업을 처리하는 것을 요구하고 있다. 국내에서도 고에너지 물리, 신약개발, 핵물리와 같은 연구 분야를 중심으로 대규모 컴퓨팅 자원을 요구하는 계산처리에 대한 수요가 증가하고 있다. 본 논문에서는 이러한 HTC과학 응용들에 대한 효율적인 지원을 국가차원의 슈퍼컴퓨팅 분산 환경에서 제공하기 위해 연구/개발되어진 대규모 계산처리 서비스(HTCaaS:HighThroughputComputingasaService)의 전체 구조 및 구성 요소, 실행 시나리오 및 실제 응용 적용 사례 등에 대해 서술한다. Petascale systems(so called supercomputers) have been mainly used for supporting communication-intensive and tightly-coupled parallel computations based on message passing interfaces such as MPI(HPC: High-Performance Computing). On the other hand, computing paradigms such as High-Throughput Computing(HTC) mainly target compute-intensive (relatively low I/O requirements)applications consisting of many loosely-coupled tasks(there is no communication needed between them). In Korea, recently emerging applications from various scientific fields such as pharmaceutical domain, high-energy physics, and nuclear physics require a very large amount of computing power that cannot be supported by a single type of computing resources. In this paper, we present our HTCaaS(High-Throughput Computing as a Service) which can leverage national distributed computing resources in Korea to support these challenging HTC applications and describe the details of our system architecture, job execution scenario and case studies of various scientific applications.
Atlantic storm modeling using the empirical orthogonal functions of sea surface temperatures
Sangwan Kim,Yongku Kim 한국데이터정보과학회 2021 한국데이터정보과학회지 Vol.32 No.6
Recently, both the numbers and intensities of Atlantic tropical storms show an upward trend under the global warming condition. Statistical models play a very important role in understanding how the climate factors such as the cycle of El Ni~no/La Ni~na, the pattern of the northern hemisphere jet stream and tropical Atlantic sea surface temperatures influence tropical storm activity. This paper proposes a hierarchical and statistical model which predicts the number of the Atlantic tropical storms using sea surface temperatures. Especially, Atlantic sea surface temperatures are incorporated into the model through empirical orthogonal functions. The proposed model is illustrated using the climate data during 1900-2002.