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        A post-genome-wide association study validating the association of the glycophorin C gene with serum hemoglobin level in pig

        Yang Liu,Zhengzheng Hu,Chen Yang,Shiwei Wang,Wenwen Wang,Qin Zhang 아세아·태평양축산학회 2017 Animal Bioscience Vol.30 No.5

        Objective: This study aimed to validate the statistical evidence from the genome-wide association study (GWAS) as true-positive and to better understand the effects of the glycophorin C (GYPC) gene on serum hemoglobin traits. Methods: Our initial GWAS revealed the presence of two single nucleotide polymorphisms (SNPs) (ASGA0069038 and ALGA0084612) for the hemoglobin concentration trait (HGB) in the 2.48 Mb region of SSC15. From this target region, GYPC was selected as a promising gene that associated with serum HGB traits in pigs. SNPs within the GYPC gene were detected by sequencing. Thereafter, we performed association analysis of the variant with the serum hemoglobin level in three pig populations. Results: We identified one SNP (g.29625094 T>C) in exon 3 of the GYPC gene. Statistical analysis showed a significant association of the SNP with the serum hemoglobin level on day 20 (p<0.05). By quantitative real-time polymerase chain reaction, the GYPC gene was expressed in eight different tissues. Conclusion: These results might improve our understanding of GYPC function and provide evidence for its association with serum hemoglobin traits in the pig. These results also indicate that the GYPC gene might serve as a useful marker in pig breeding programs.

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        Assessment and comparison of three different air quality indices in China

        Youping Li,Ya Tang,Zhongyu Fan,Hong Zhou,Zhengzheng Yang 대한환경공학회 2018 Environmental Engineering Research Vol.23 No.1

        Air pollution index (API) is used in Mainland China and includes only SO₂, NO₂ and PM10. In 2016, air quality index (AQI) replaced API. AQI contains three more air pollutants (CO, O₃ and PM2.5). Both the indices emphasize on the effect of a single pollutant, whereas the contributions of all other pollutants are ignored. Therefore, in the present work, a novel air quality index (NAQI), which emphasizes on all air pollutants, has been introduced for the first time. The results showed that there were 19 d (5.2%) in API, 28 d (7.7%) in AQI and 183 d (50.1%) in NAQI when the indices were more than 100. In API, PM10 and SO₂ were regarded as the primary pollutants, whereas all five air pollutants in AQI were regarded as primary. Furthermore, four air pollutants (other than the CO) in NAQI were regarded as primary pollutants. PM10, as being the primary pollutant, contributed greatly in these air quality indices, and accounted for 51.2% (API), 37.0% (AQI) and 52.6% (NAQI). The results also showed that particulate matter pollution was significantly high in Luzhou, where stricter pollution control measures should be implemented.

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