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RISS 인기검색어
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- 저자 : Xiaoqing Su (검색결과 3 건)
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A Formal Description of XML Tree Pattern Query for XQuery Language
Husheng Liao,Xiaoqing Li,Hang Su 보안공학연구지원센터 2014 International Journal of Database Theory and Appli Vol.7 No.5
In order to express tree pattern query in query plan and take advantage of formal method to analyze its behavioral characteristics, this paper present a formal description of tree pattern query based on functional language and denotational semantics. This description major focuses on behavior of a tree pattern query on matching against an eXtensible Markup Language (XML) document tree. First, we introduce a formal definition for a kind of extended generalized tree pattern (GTP++). Then we present a functional tree pattern description language (XTPL) for GTP++ and give its complete denotational semantics based on a novel data structure, named WTree, which efficiently organizes this typical XML data query results and provides flexible data access method. In the end, we present the formal semantics of identifying tree pattern from path expressions. By using formal methods, the semantics of tree pattern query is consistent and analyzable. As the core operation of XML query, this formal description can provide an initial step for analyzing the correctness of XML queries, and improves the reliability and robustness of query processing methods.
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De novo transcriptome analysis of Rhododendron molle G. Don flowers by Illumina sequencing
Zheng Xiao,Jiale Su,Xiaobo Sun,Chang Li,Lisi He,Shangping Cheng,Xiaoqing Liu 한국유전학회 2018 Genes & Genomics Vol.40 No.6
Rhododendron molle G. Don occupies an important phylogenetic node in the genus rhododendron with unique yellow flower and medicinal functions. However, only limited genetic resources and their genome information are available for the generation of rhododendron flowers. The next generation sequencing technologies enables generation of genomic resources in a short time and at a minimal cost, and therefore provide a turning point for rhododendron research. Our goal is to use the genetic information to facilitate the relevant research on flowering and flower color formation in R. molle. In total, 66,026 unigenes were identified, among which 31,298 were annotated in the NCBI non-redundant protein database and 22,410 were annotated in the Swiss-Prot database. Of these annotated unigenes, 9490 and 18,680 unigenes were assigned to clusters of orthologous groups and gene ontology categories, respectively. A total of 7177 genes were mapped to 118 pathways using the Kyoto Encyclopedia of Genes and Genomes Pathway database. In addition, 8266 simple sequence repeats (SSRs) were detected, and these SSRs will undoubtedly benefit rhododendron breeding work. Metabolic pathway analysis revealed that 32 unigenes were predicted to be involved in carotenoid biosynthesis. Our transcriptome revealed 32 engines that encode key enzymes in the carotenoid biosynthesis pathway, including PSY, PDS, LCYB, LCYE, etc. The content of β-carotene was much higher than the other carotenoids throughout the flower development. It was consistent with the key genes expression level in the carotenoid biosynthesis pathway by the Illumina expression profile analysis and the qRT-PCR analysis. Our study identified genes associated with carotenoid biosynthesis in R. molle and provides a valuable resource for understanding the flowering and flower color formation mechanisms in R. molle.
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