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Moradi, Zohreh,Nazifi, Ehsan,Mehrvar, Mohsen The Korean Society of Plant Pathology 2017 Plant Pathology Journal Vol.33 No.3
Sugarcane mosaic virus (SCMV) is one of the most damaging viruses infecting sugarcane, maize and some other graminaceous species around the world. To investigate the genetic diversity of SCMV in Iran, the coat protein (CP) gene sequences of 23 SCMV isolates from different hosts were determined. The nucleotide sequence identity among Iranian isolates was more than 96%. They shared nucleotide identities of 75.5-99.9% with those of other SCMV isolates available in GenBank, the highest with the Egyptian isolate EGY7-1 (97.5-99.9%). The results of phylogenetic analysis suggested five divergent evolutionary lineages that did not completely reflect the geographical origin or host plant of the isolates. Population genetic analysis revealed greater between-group than within-group evolutionary divergence values, further supporting the results of the phylogenetic analysis. Our results indicated that natural selection might have contributed to the evolution of isolates belonging to the five identified SCMV groups, with infrequent genetic exchanges occurring between them. Phylogenetic analyses and the estimation of genetic distance indicated that Iranian isolates have low genetic diversity. No recombination was found in the CP cistron of Iranian isolates and the CP gene was under negative selection. These findings provide a comprehensive analysis of the population structure and driving forces for the evolution of SCMV with implications for global exchange of sugarcane germplasm. Gene flow, selection and somehow homologous recombination were found to be the important evolutionary factors shaping the genetic structure of SCMV populations.
Hossein Naeimi,Zahra Sadat Nazifi 한국공업화학회 2014 Journal of Industrial and Engineering Chemistry Vol.20 No.3
A simple and efficient one-pot procedure for the synthesis of 1,8-dioxo-octahydroxanthene derivativesin water under ultrasound irradiation is described. These heterocycles were prepared by condensation ofdimedone with various aromatic aldehydes in the presence of Brønsted acidic ionic liquids as aconvenient, cheap, readily synthesized and eco-friendly catalyst. This procedure has a lot of advantagessuch as: excellent yields, simplicity of the workup, low cost, short reaction times and green conditions. Ionic liquids could be recycled several times without significant loss of activity and high purity.
Zohreh Moradi,Ehsan Nazifi,Mohsen Mehrvar 한국식물병리학회 2017 Plant Pathology Journal Vol.33 No.3
Sugarcane mosaic virus (SCMV) is one of the most damaging viruses infecting sugarcane, maize and some other graminaceous species around the world. To investigate the genetic diversity of SCMV in Iran, the coat protein (CP) gene sequences of 23 SCMV isolates from different hosts were determined. The nucleotide sequence identity among Iranian isolates was more than 96%. They shared nucleotide identities of 75.5–99.9% with those of other SCMV isolates available in GenBank, the highest with the Egyptian isolate EGY7-1 (97.5–99.9%). The results of phylogenetic analysis suggested five divergent evolutionary lineages that did not completely reflect the geographical origin or host plant of the isolates. Population genetic analysis revealed greater between-group than within-group evolutionary divergence values, further supporting the results of the phylogenetic analysis. Our results indicated that natural selection might have contributed to the evolution of isolates belonging to the five identified SCMV groups, with infrequent genetic exchanges occurring between them. Phylogenetic analyses and the estimation of genetic distance indicated that Iranian isolates have low genetic diversity. No recombination was found in the CP cistron of Iranian isolates and the CP gene was under negative selection. These findings provide a comprehensive analysis of the population structure and driving forces for the evolution of SCMV with implications for global exchange of sugarcane germplasm. Gene flow, selection and somehow homologous recombination were found to be the important evolutionary factors shaping the genetic structure of SCMV populations.
Effect of Nitrogen and Boron Localization on the Electrical Properties of Porous Graphene
Mahmoud Jafari,Shima Nazifi,Mohamad Asadpour 성균관대학교(자연과학캠퍼스) 성균나노과학기술원 2017 NANO Vol.12 No.9
The electrical properties of porous graphene (PG) are investigated by using the density functional theory (DFT) with the generalized gradient approximation (GGA). The addition of Boron and nitrogen impurities could change the semiconductor into the n or p-type. Results showed that PG had pseudo-metal properties and a direct band gap. Furthermore, adding two impurities resulted in a greater decrease in the energy of the band gap as compared to the other states. In particular, when two impurities were of the boron type, the reduction was more tangible. Moreover, the addition of impurity could also increase the conductivity and pushed the electrical properties toward being a metal.
Pathophysiological role of Atg5 in human ulcerative colitis
( Razieh Ardali ),( Nasrin Kazemipour ),( Saeed Nazifi ),( Kamran Bagheri Lankarani ),( Iman Razeghian Jahromi ),( Masood Sepehrimanesh ) 대한장연구학회 2020 Intestinal Research Vol.18 No.4
Background/Aims: Ulcerative colitis (UC), along with Crohn’s disease, is one of the main types of inflammatory bowel disease (IBD). On the other hand, deregulated autophagy is involved in many chronic diseases, including IBD. In this study, we aimed to investigate the role of Atg5 and microRNA-181a (miR-181a) in the pathophysiology of UC. Methods: Colon biopsy, stool, and blood samples of 6 men and 9 women were confirmed for UC. Also, 13 men and 17 women were selected as healthy control (HC). Enzyme-linked immunosorbent assay (ELISA) and immunohistochemistry were used to measure the Atg-5 content of the colon biopsies. Besides, the serum and stool levels of Atg5 were measured using ELISA. Moreover, the total RNA of blood cells was extracted and evaluated for the expression of miR-181a. Results: We found 1.2 ng/mL versus 0.46 ng/mL, 0.34 ng/mL versus 0.24 ng/mL, and 0.082 ng/mL versus 0.062 ng/mL of Atg5 in stool, intestinal tissue, and serum of UC and HCs, respectively. There was no significant difference in the expression of miR-181a in the blood samples of UC and HCs. Immunohistochemistry showed high positivity without any significant difference between the 2 groups in the quantitative analysis. Conclusions: The significant difference observed between the stool Atg5 content of the HCs and UC patients may provide new insight into using this protein as a diagnostic biomarker, however, considering the small size of our studied population further studies are needed. (Intest Res 2020;18:421-429)
Zohreh Moradi,Hossein Maghdoori,Ehsan Nazifi,Mohsen Mehrvar 한국식물병리학회 2021 Plant Pathology Journal Vol.37 No.2
Sugar beet (Beta vulgaris L.) is known as a key prod- uct for agriculture in several countries across the world. Beet soil-borne virus (BSBV) triggers substan- tial economic damages to sugar beet by reducing the quantity of the yield and quality of the beet sugars. We conducted the present study to report the complete genome sequences of two BSBV isolates in Turkey for the first time. The genome organization was identi- cal to those previously established BSBV isolates. The tripartite genome of BSBV-TR1 and -TR3 comprised a 5,835-nucleotide (nt) RNA1, a 3,454-nt RNA2, and a 3,005-nt RNA3 segment. According to sequence identity analyses, Turkish isolates were most closely related to the BSBV isolate reported from Iran (97.83- 98.77% nt identity). The BSBV isolates worldwide (n = 9) were phylogenetically classified into five (RNA-coat protein read through gene [CPRT], TGB1, and TGB2 segments), four (RNA-rep), or three (TGB3) lineages. In genetic analysis, the TGB3 revealed more genetic variability (Pi = 0.034) compared with other regions. Population selection analysis revealed that most of the codons were generally under negative selection or neutral evolution in the BSBV isolates studied. How- ever, positive selection was detected at codon 135 in the TGB1, which could be an adaptation in order to facili- tate the movement and overcome the host plant resis- tance genes. We expect that the information on genome properties and genetic variability of BSBV, particularly in TGB3, TGB1, and CPRT genes, assist in developing effective control measures in order to prevent severe losses and make amendments in management strate- gies.
Sakineh Amani,Noorbakhsh Mohammad Foad,Ahmadi Nasrollah,Saeed Nazifi,Behdokht Barzan 대한약침학회 2023 Journal of pharmacopuncture Vol.26 No.2
Objectives: Several studies have reported that methotrexate is an anti-cancer and immunosuppressive drug leading to lung injury. Therefore, the present study aimed to investigate the protective effects of silymarin, citral, and thymoquinone on methotrexate-induced pulmonary toxicity. Methods: Forty-eight rats were divided into six groups, including healthy, Methotrexate, and drug carrier control groups and silymarin, citral, and thymoquinone treatment groups. At the end of the experiment, the studied rats were anesthetized and sacrificed by CO 2 . Lung tissue samples were isolated to measure the antioxidant activity and histopathological evaluation. Results: In the thymoquinone treatment group, the concentration of total antioxidant capacity and Malondialdehyde increased and decreased significantly, respectively, compared to the methotrexate group. The histopathological evaluation of the lung of the methotrexate group showed hemorrhage and congestion, the nodule-like accumulation of mononuclear inflammatory lymphocytes around the blood vessel, a small number of neutrophils around the blood vessel, and the inflammatory cells around the small vessels. However, no significant pathological alterations were observed in the treatment groups, especially the thymoquinone treatment group. Conclusion: Thymoquinone has the greatest protective effect on methotrexate-induced lung injury, probably due to its antioxidant effect.