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Sinorhizobium meliloti 유래 Mannitol Dehydrogenase 유전자의 클로닝 및 대장균 내 발현과 효소특성 규명
장명운 ( Myoung Uoon Jang ),박정미 ( Jung Mi Park ),김민정 ( Min Jeong Kim ),이소원 ( So Won Lee ),강정현 ( Jung Hyun Kang ),김태집 ( Tae Jip Kim ) 한국미생물생명공학회(구 한국산업미생물학회) 2013 한국미생물·생명공학회지 Vol.41 No.2
Sinorhizobium meliloti 1021 (KCTC 2353) 유전체로부터 mannitol dehydrogenase (SmMDH)로 추정되는 유전자를 클로닝하고, 대장균에서 대량 발현하였다. 이 유전자는 494개의 아미노산(약 54 kDa)을 암호화하는 1,485 bp의 염기로 구성되며, 기존에 보고된 long-chain dehydrogenase/reductase 계열 MDH 효소들과 약 35-55%의 아미노산 서열상동성을 나타내었다. 재조합 SmMDH의 최적 반응온도는 40oC이며, pH 7.0의 조건에서 최대의 D-fructose 환원활성, 그리고 pH 9.0에서 최대의 D-mannitol 산화활성을 보였다. 특히, 이 효소는 NAD+/NADH 조효소의 존재 하에서 산화· 환원 활성을 나타내며, NADP+/NADPH는 조효소로 이용하지 못하였다. 결론적으로 SmMDH는 전형적인 NAD+/NADH-의존형 mannitol dehydrogenase (EC 1.1.1.67)임을 확인하였다. A mannitol dehydrogenase (MDH; EC 1.1.1.67) gene was cloned from the Sinorhizobium meliloti 1021 (KCTC 2353) genome and expressed in Escherichia coli. It was seen to have an open reading frame consisting of 1,485 bp encoding 494 amino acids (about 54 kDa), which shares approximately 35-55% of amino acid sequence identity with some known long chain dehydrogenase/ reductase family enzymes. The recombinant S. meliloti MDH (SmMDH) showed the highest activity at 40oC, and pH 7.0 (D-fructose reduction) and pH 9.0 (D-mannitol oxidation), respectively. SmMDH could catalyze the oxidative/reductive reactions between D-mannitol and D-fructose in the presence of NAD+/NADH as a coenzyme, but not with NADP+/NADPH. These results indicate that SmMDH is a typical NAD+/NADH-dependent mannitol dehydrogenase.
Lactococcus lactis subsp. lactis 유래 cyclomaltodextrinase 유전자의 대장균 내 발현 및 효소 특성
장명운 ( Myoung Uoon Jang ),강혜정 ( Hye Jeong Kang ),정창구 ( Chang Ku Jeong ),박정미 ( Jung Mi Park ),이아름 ( Ah Rum Yi ),강정현 ( Jung Hyun Kang ),이소원 ( So Won Lee ),김태집 ( Tae Jip Kim ) 한국미생물생명공학회(구 한국산업미생물학회) 2013 한국미생물·생명공학회지 Vol.41 No.4
본 연구에서 584개의 아미노산(68.7 kDa)으로 구성된 cyclomaltodextrinase (LLCD)의 유전자를 Lactococcus lactis subsp. lactis KCTC 3769 (ATCC 19435)로부터 클로닝하였다. LLCD는 일반적인 CDase 계열 효소들과 약 40% 전후의 아미노산 서열 상동성을 나타내었다. C-말단에 6개의 히스티딘 잔기를 가진 재조합 효소는 dimer의 형태로 대장균에서 발현되고 정제되었다. LLCD는 pH 7.0 및 37oC에서 최대의 β-CD 가수분해 활성을 나타내었다. 특히, 이 효소는 starch 및 pullulan에 대해 극히 낮은 활성을 보였으나, 반면에 CD에 대한 가수분해 활성은 starch에 비해 약 80배 이상 높았다. 이처럼 높은 CD에 대한 활성을 근거로 LLCD는 CDase 계열 효소로 분류될 수 있으나, starch, pullulan, 그리고 acarbose에 대한 매우 낮은 활성은 다른 유사효소와 비교하여 차별화되는 특징이다. A putative cyclomaltodextrinase (LLCD) gene was cloned from the genome of Lactococcus lactis subsp. lactis KCTC 3769 (ATCC 19435), which encodes 584 amino acids with the predicted molecular mass of 68.7 kDa. KCTC 3769 shares approximately 40% of amino acid sequence identity with the CDase-family of enzymes. The dimeric enzyme with C-terminal six-histidines was heterologously expressed and purified from recombinant E. coli. LLCD showed the highest activity against β- cyclodextrin (CD) at pH 7.0 and 37oC. In particular, LLCD exhibited extremely low activity against starch and pullulan, while its CD-hydrolyzing activity was about 80 times higher than starch. Due to its much higher activity on CD over starch, LLCD has been identified as a member of CDases. However, LLCD can be distinguished from the other common CDases on the basis of its extremely low hydrolyzing activity against starch, pullulan, and acarbose.
Listeria innocua 유래 cyclomaltodextrinase의 유전자 클러스터 구조 및 효소 특성
장명운 ( Myoung Uoon Jang ),정창구 ( Chang Ku Jeong ),강혜정 ( Hye Jeong Kang ),김민정 ( Min Jeong Kim ),이민재 ( Min Jae Lee ),손병삼 ( Byung Sam Son ),김태집 ( Tae Jip Kim ) 한국미생물생명공학회(구 한국산업미생물학회) 2016 한국미생물·생명공학회지 Vol.44 No.3
Listeria innocua ATCC 33090 유전체로부터 maltose/ maltodextrin 이용과 관련한 유전자 클러스터를 발견하였으며, 그로부터 cyclomaltodextrinase (LICD)로 예상되는 유전자를 클로닝하고, 대장균 내에서 발현하였다. LICD는 총 591개의 아미노산으로 이루어진 68.6 kDa 크기의 효소이며, 일반적인 CDase 계열 효소들과 39-58%의 아미노산 서열 상동성을 나타내었다. 재조합 LICD는 37℃, pH 7.0의 조건에서 최대 활성을 나타내었으며, cyclodextrin, starch, maltotriose 에 작용하여 주로 maltose를 생성하였다. 또한 pullulan을 분해하여 panose를, 그리고 acarbose를 분해하여 glucose와 acarviosine-glucose를 생성하는 전형적인 CDase 계열 효소임을 확인하였다. 그러나, starch 및 pullulan과 같은 고분자기질 대비 cyclodextrin 및 maltotriose의 저분자 소당류에 대해 상대적으로 높은 활성을 나타내며, acarbose 분해 활성이 매우 낮아 다른 효소들과 차별성을 가진다. 또한 LICD는 acarbose 공여체를 가수분해하여 수용체에 전이하는 당전이 활성을 보였다. A putative cyclomaltodextrinase gene (licd) was found from the genome of Listeria innocua ATCC 33090. The licd gene is located in the gene cluster involved in maltose/maltodextrin utilization, which consists of various genes encoding maltose phosphorylase and sugar ABC transporters. The structural gene encodes 591 amino acids with a predicted molecular mass of 68.6 kDa, which shares less than 58% of amino acid sequence identity with other known CDase family enzymes. The licd gene was cloned, and the dimeric enzyme with C-terminal six-histidines was successfully produced and purified from recombinant Escherichia coli. The enzyme showed the highest activity at pH 7.0 and 37℃. licd could hydrolyze β cyclodextrin, starch, and maltotriose to mainly maltose, and it cleaved pullulan to panose. It could also catalyze the hydrolysis of acarbose to glucose and acarviosine-glucose. In particular, it showed significantly higher activity towards β-cyclodextrin and maltotriose than towards starch and acarbose. licd also showed transglycosylation activity, producing α-(1,6)- and/or α-(1,3)-linked transfer products from the acarbose donor and α-methyl glucopyranoside acceptor.
Synergistic Action Modes of Arabinan Degradation by Exo- and Endo- Arabinosyl Hydrolases
( Jung Mi Park ),( Myoung Uoon Jang ),( Gyo Won Oh ),( Eun Hee Lee ),( Jung Hyun Kang ),( Yeong-bok Song ),( Nam Soo Han ),( Tae Jip Kim ) 한국미생물 · 생명공학회 2015 Journal of microbiology and biotechnology Vol.25 No.2
Two recombinant arabinosyl hydrolases, α-L-arabinofuranosidase from Geobacillus sp. KCTC 3012 (GAFase) and endo-(1,5)-α-L-arabinanase from Bacillus licheniformis DSM13 (BlABNase), were overexpressed in Escherichia coli, and their synergistic modes of action against sugar beet (branched) arabinan were investigated. Whereas GAFase hydrolyzed 35.9% of L-arabinose residues from sugar beet (branched) arabinan, endo-action of BlABNase released only 0.5% of L-arabinose owing to its extremely low accessibility towards branched arabinan. Interestingly, the simultaneous treatment of GAFase and BlABNase could liberate approximately 91.2% of L-arabinose from arabinan, which was significantly higher than any single exo-enzyme treatment (35.9%) or even stepwise exo- after endo-enzyme treatment (75.5%). Based on their unique modes of action, both exo- and endo-arabinosyl hydrolases can work in concert to catalyze the hydrolysis of arabinan to L-arabinose. At the early stage in arabinan degradation, exo-acting GAFase could remove the terminal arabinose branches to generate debranched arabinan, which could be successively hydrolyzed into arabinooligosaccharides via the endoaction of BlABNase. At the final stage, the simultaneous actions of exo- and endo-hydrolases could synergistically accelerate the L-arabinose production with high conversion yield.