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Rongbai Li,Jijing Luo,Yongliang Wang,Qigui Jiang,Jianbin Liu,Wei Zeng,Yindi Zeng 한국유전학회 2017 Genes & Genomics Vol.39 No.2
Rice (Oryza sativa L.) is thermophilic crop and all of its growth stages are affected by low temperature stress. However, some populations of common wild rice in Guangxi Province (China) (GXWR) can tolerate low temperature stress. To understand the molecular mechanisms underlying chilling tolerance in these wild rice resources, transcriptome sequencing was performed to study the differentially expressed genes (hereafter referred to as DEGs) between GXWR-derived chilling-tolerant chromosome segment substitution line (hereafter referred to as CSSL), DC90, and its chilling-sensitive recurrent parent 9311 under early chilling stress. Comparative transcriptomic analysis revealed 659 DEGs exclusively identified in DC90 in response to early chilling stress. Functional clustering by CARMO (comprehensive annotation platform for functional exploration of rice multiomics data) showed that majority of the DEGs were enriched in chloroplasts, suggesting a connection between chilling stress tolerance and photosynthesis regulation exists in rice. KEGG analysis of these DEGs presented a complicated chilling responsive regulatory network, including ‘phytohormone signaling’, ‘photosynthesis pathway’, ‘ribosome translation machinery’, ‘phenylpropanoid biosynthesis’, which is coordinately involved in early chilling response. Here, the identified DEGs and unveiled molecular regulatory network sheds light on deep understanding the mechanisms underlying rice chilling stress tolerance. As well, KEGG term-enriched DEGs, chilling tolerant QTLs (quantitative trait loci), and co-localized DEGs in introgression interval, will be focused for further functional investigation of the molecular mechanisms of chilling stress response in rice.
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Lilong Liu,Baoxiang Qin,Yunzhen Li,Minyi Wei,Zishuai Wu,Fang Liu,Yongfu Qiu,Jijing Luo,Rongbai Li 한국유전학회 2017 Genes & Genomics Vol.39 No.11
Awn is one of important traits during rice domestication. To understand the development of rice awn and the roles it played in rice domestication, we preliminary mapped a major QTL An-3 for awn development using chromosome segment substitution line CSSL138 developed by introgressed genomic fragments of long-awned Guangxi common wild rice (GXCWR, Oryza rufipogon Griff.) into genetic background of short-awned indica cultivar 93–11. An-3 was then fine mapped to a 7-kb region of chromosome 8. An epidermal patterning factor-like protein gene was identified as the single candidate gene corresponding to this QTL. An-3 was showed to be an allele of RAE2 and GAD1, and negatively regulated 1000-grains weight, grain length, and length–width ratio. Comparing with the coding sequences of An-3 from CSSL138, a 2- and 4-bp frameshift deletions in the second exon were identified in 93–11 and Nipponbare, respectively. Taken together, our results provide valuable natural variation in the alleles of An-3 between common wild rice and cultivated rice, which will be helpful in clarifying the mechanism of awn development and promoting the application of an-3 in genetic improvement of rice yield traits.
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