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Xing-Chun Wu,Chang-Xun Fang,Jin-Yang Chen,Qing-Shui Wang,Ting Chen,Wen-Xiong Lin,Zhong-Liang Huang 한국식물학회 2011 Journal of Plant Biology Vol.54 No.4
To determine the proteomic response to UV irradiation, two cultivars, i.e., Lemont (UV tolerant) and Dular (UV sensitive), were exposed to natural and enhanced ultraviolet-B (UV-B) irradiation for 1, 7, and 14 days, and two-dimensional gel electrophoresis in combination with mass spectrometry (MS) and bioinformatics were used to compare the different proteomic responses in the leaves of the two cultivars. Thirty-nine proteins were up- or downregulated following the UV-B treatments. Among them, 30 increased or decreased more than 1.5-fold in abundance. They were further tested by using matrix-assisted laser desorption/ionization time of flight MS and performed a database search. Twentyfour proteins were thus identified. These identified proteins were mostly upregulated in Lemont, whereas only 14 of them upregulated in Dular. Nine proteins involved in glycometabolism and fatty acid metabolisms, signal transduction, and protein synthesis and folding in Dular were not changed. These results suggest that there was a complex regulative mechanism on the proteomes in rice leaves upon UV-B exposure.
Tan Lu,Wu Dan-Dan,Zhang Chang-Bing,Cheng Yi-Ran,Sha Li-Na,Fan Xing,Kang Hou-Yang,Wang Yi,Zhang Hai-Qin,Escudero Marcial,Zhou Yong-Hong 한국유전학회 2024 Genes & Genomics Vol.46 No.5
Background Elymus atratus (Nevski) Hand.-Mazz. is perennial hexaploid wheatgrass. It was assigned to the genus Elymus L. sensu stricto based on morphological characters. Its genome constitution has not been disentangled yet. Objective To identify the genome constitution and origin of E. atratus. Methods In this study, genomic in situ hybridization and fluorescence in situ hybridization, and phylogenetic analysis based on the Acc1, DMC1 and matK sequences were performed. Results Genomic in situ hybridization and fluorescence in situ hybridization results reveal that E. atratus 2n = 6x = 42 is composed of 14 St genome chromosomes, 14 H genome chromosomes, and 14 Y genome chromosomes including two H-Y type translocation chromosomes, suggesting that the genome formula of E. atratus is StStYYHH. The phylogenetic analysis based on Acc1 and DMC1 sequences not only shows that the Y genome originated in a separate diploid, but also suggests that Pseudoroegneria (St), Hordeum (H), and a diploid species with Y genome were the potential donors of E. atratus. Data from chloroplast DNA showed that the maternal donor of E. atratus contains the St genome. Conclusion Elymus atratus is an allohexaploid species with StYH genome, which may have originated through the hybridization between an allotetraploid Roegneria (StY) species as the maternal donor and a diploid Hordeum (H) species as the paternal donor. Background Elymus atratus (Nevski) Hand.-Mazz. is perennial hexaploid wheatgrass. It was assigned to the genus Elymus L. sensu stricto based on morphological characters. Its genome constitution has not been disentangled yet. Objective To identify the genome constitution and origin of E. atratus. Methods In this study, genomic in situ hybridization and fluorescence in situ hybridization, and phylogenetic analysis based on the Acc1, DMC1 and matK sequences were performed. Results Genomic in situ hybridization and fluorescence in situ hybridization results reveal that E. atratus 2n = 6x = 42 is composed of 14 St genome chromosomes, 14 H genome chromosomes, and 14 Y genome chromosomes including two H-Y type translocation chromosomes, suggesting that the genome formula of E. atratus is StStYYHH. The phylogenetic analysis based on Acc1 and DMC1 sequences not only shows that the Y genome originated in a separate diploid, but also suggests that Pseudoroegneria (St), Hordeum (H), and a diploid species with Y genome were the potential donors of E. atratus. Data from chloroplast DNA showed that the maternal donor of E. atratus contains the St genome. Conclusion Elymus atratus is an allohexaploid species with StYH genome, which may have originated through the hybridization between an allotetraploid Roegneria (StY) species as the maternal donor and a diploid Hordeum (H) species as the paternal donor.
( Tian Zhou Liu ),( Bang Xing Wang ),( Jin Tao Guo ),( Yang Zhou ),( Mugweru Julius ),( Moses Njire ),( Yuan Yuan Cao ),( Tian Wu ),( Zhi Yong Liu ),( Chang Wei Wang ),( Yong Xu ),( Tian Yu Zhang ) 한국미생물 · 생명공학회 2015 Journal of microbiology and biotechnology Vol.25 No.9
The combination of trimethoprim (TMP) and sulfamethoxazole (SMX) has been shown to be active against Mycobacterium tuberculosis (Mtb) in clinical tuberculosis (TB) treatment. However, the mechanism of action of TMP-SMX against Mtb is still unknown. To unravel this, we have studied the effect of TMP and SMX by deleting the folP2 gene in Mycobacterium smegmatis (Msm), and overexpressing the Mtb and Msm folP1/2 genes in Msm. Knocking out of the folP2 gene in Msm reduced the minimum inhibitory concentration of SMX 8-fold compared with wild type. Overexpression of the folP1 genes from Mtb and Msm increased the MICs by 4- and 2-fold in Msm for SMX and TMP, respectively. We show a strong correlation between the expression of folP1 and folP2 genes and TMP-SMX resistance in mycobacteria. This suggests that a combination of FolP2 inhibitor and SMX could be used for TB treatment with a better outcome.
A diagnosis method for imbalanced bearing data based on improved SMOTE model combined with CNN-AM
Wang Zhenya,Liu Tao,Wu Xing,Liu Chang 한국CDE학회 2023 Journal of computational design and engineering Vol.10 No.5
A boundary enhancement and Gaussian mixture model (G) optimized synthetic minority oversampling technique (SMOTE) algorithm (BE-G-SMOTE) is proposed to improve diagnostic accuracy under imbalanced bearing fault data conditions. It is designed to solve the problem that the diversity of samples generated by the original SMOTE model is limited, as well as the deep learning model is limited by the size of training samples and processing speed. Firstly, a few bearing fault data are clustered by G to achieve cluster division. Secondly, according to the cluster density distribution function designed in this paper, the weights of different clusters and sample weights to achieve intra-class balance are determined and data quality is improved. Then, to take full advantage of the limited fault data, based on the sensitivity of the support vector machine (SVM) to imbalanced data, the enhanced boundary is established between generated data and the SVM classifier under different penalty factor (PF) values. According to the accuracy, the optimal PF is determined, and fault datasets satisfying diversity are obtained. To improve the classification accuracy, a convolutional neural network with an attention mechanism is built. Finally, analysis using two practical cases shows the effectiveness of the proposed method.
ZICHUAN MA,YINSU WU,SHENGTAO XING,YONGFANG CHANG,XIAORU WEI 성균관대학교(자연과학캠퍼스) 성균나노과학기술원 2014 NANO Vol.9 No.7
Various manganese oxides nano/micro-crystals, including Mn 3 O 4 octahedrons, hierarchical °ow-er-like K- ? -MnO 2 microspheres, multi-branch and strip-shaped ? -MnOOH, have been prepared bya lignosulfanate (LSN)-mediated hydrothermal process. The e®ect of LSN on the structure andmorphology has been thoroughly investigated by X-ray powder di®raction and scanning electronmicroscopy (SEM). The results indicated that stepwise reduction and Ostwald's ripening occurredsimultaneously in this hydrothermal process, and LSN could serve as both reducing agent andgrowth modi¯er. The appropriate reducing capacity and selective absorption ability of LSN playedan important role for the formation of various manganese oxides nano/micro-crystals. The cat-alytic performance of the products for the oxidation of o-xylene has been also investigated. Theresult showed that the MnO 2 crystals prepared with LSN exhibited the highest catalytic activity.