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Low-Temperature FTIR Spectroscopy of Bacteriorhodopsin and Phoborhodopsin
Kandori, Hideki,Furutani, Yuji,Shimono, Kazumi,Iwamoto, Masayuki,Sudo, Yuki,Shichida, Yoshinori,Kamo, Naoki Korean Society of Photoscience 2002 Journal of Photosciences Vol.9 No.2
Archaeal rhodopsins possess retinal molecule as their chromophores, and their light-energy and light-signal conversions are triggered by all-trans to 13-cis isomerization of the retinal chromophore. Relaxation through structural changes of protein then leads to functional processes, proton pump in bacteriorhodopsin (bR) and transducer activation in phoborhodopsin (pR). It is known that sensory rhodopsins can pump protons in the absence of their transducers. Thus, there should be common and specific features in their protein structural changes for function. In this paper, our r ecent studies on pR from Natronobacterium pharaonis (ppR) by means of low-temperature Fourier-transform infrared (FTIR) spectroscopy are compared with those of bR. In particular, protein structural changes upon retinal photoisomerization are studied. Comparative investigation of ppR and bR revealed the similar structures of the polyene chain of the chromophore and water-containing hydrogen-bonding network, whereas the structural changes upon photoisomerization were more extended in ppR than in bR. Extended protein structural changes were clearly shown by the assignment of the C=O stretch of Asnl05. FTIR studies of a ppR mutant with the same retinal binding site as in bR revealed that the Schiff base region is important to determine their colors.
Literature Review on Recent Magnetocardiography and Impedance-Magnetocardiography Technologies
Kandori, A.,Miyashita, T.,Ogata, K.,Seki, Y.,Suzuki, D.,Tsukamoto, A.,Saito, K.,Yokosawa, K.,Tsukada, K.,Yamada, Satsuki,Watanabe, Shigeyuki,Horigome, Hitoshi,Yamaguchi, Iwao The Korean Superconductivity Society 2006 Progress in superconductivity Vol.8 No.1
We have developed magnetocardiography(MCG) and impedance magnetocardiography(I-MCG) for detecting heart disease by using dc-SQUID technology. The MCG system, using low-Tc SQUID, is being applied commercially for diagnosing heart disease. Using the low-Tc MCG system, many clinical studies on detection of abnormality have been performed. Furthermore, we have developed a portable MCG system using high-Tc SQUID. For detecting changes in kinetic impedance in the heart, an I-MCG system has been demonstrated. The I-MCG system could detect the mechanical movement of the heart. In this report, we review current clinical applications of magnetocardiography and impedance magnetocardiography.
FTIR spectroscopy of the two-photon product of sensory rhodopsin I
Sasaki, Jun,Kannaka, Masato,Kandori, Hideki,Tokunaga, Fumio Korean Society of Photoscience 2002 Journal of Photosciences Vol.9 No.2
A halophilic archaeon, Halobacterium salinarum, exhibits phototactic behaviors, by which the organism is guided to red-orange light and evades shorter wavelengths of light. The phototaxis is mediated by two retinal proteins, sensory rhodopsin I and II (SRI and SRII), whose structures are analogous to the cognate protein bacteriorhodopsin, a light-driven proton pump. SRI mediates both attractant and repellent swimming behaviors to orange light and near- UV light, respectively. The two different signaling through the single photoreceptor have been ascribed to the presence of two active structures of SRI (S$\_$373/ and P$\_$520), which are produced upon orange light illumination of SRI and upon subsequent near-UV illumination of S$\_$373/, respectively. In the present study, we have measured the difference FTIR spectra of S$\_$373/ and P$\_$520/ states. In P$\_$520/, the isomeric structure of the chromophore is assignable to all-trans, and the Schiff base of the chromophore is protonated with concomitant deprotonation of Asp76, a combination which allows for the formation of a salt bridge between them. It was suggested that the way of interaction between the Schiff base and the counterion, which is different among SRI$\_$587/, S$\_$373/ and P$\_$520/ and which has been shown to drive the conformational changes in the cognate protein, bacteriorhodopsin, is the key to controlling conformational changes for the attractant and the repellent signaling by SRI.
An Inward Proton Transport Using Anabaena Sensory Rhodopsin
Akira Kawanabe,Yuji Furutani,정광환,Hideki Kandori 한국미생물학회 2011 The journal of microbiology Vol.49 No.1
ATP is synthesized by an enzyme that utilizes proton motive force and thus nature creates various proton pumps. The best understood proton pump is bacteriorhodopsin (BR), an outward-directed light-driven proton pump in Halobacterium salinarum. Many archaeal and eubacterial rhodopsins are now known to show similar proton transport activity. Proton pumps must have a specific mechanism to exclude transport in the reverse direction to maintain a proton gradient, and in the case of BR, a highly hydrophobic cytoplasmic domain may constitute such machinery. Although an inward proton pump has neither been created naturally nor artificially, we recently reported that an inward-directed proton transport can be engineered from a bacterial rhodopsin by a single amino acid replacement. Anabaena sensory rhodopsin (ASR) is a photochromic sensor in freshwater cyanobacteria, possessing little proton transport activity. When we replace Asp217at the cytoplasmic domain (distance ~15 Å from the retinal chromophore) to Glu, ASR is converted into an inward proton transport, driven by absorption of a single photon. FTIR spectra clearly show an increased proton affinity for Glu217, which presumably controls the unusual directionality opposite to normal proton pumps.
Effect of Asp193 on Proton Affinity of the Schiff Base in pharaonis phoborhodopsin
Iwamoto, Masayuki,Furutani, Yuji,Sudo, Yuki,Shimono, Kazumi,Kandori, Hideki,Kamo, Naoki Korean Society of Photoscience 2002 Journal of Photosciences Vol.9 No.2
Spectroscopic titration of D 193N and D 193E mutants of pharaonis phoborhodopsin (ppR) were performed to evaluate the pK$_{a}$ of the Schiff base Asp 193 corresponds to Glu204 of bacteriorhodopsin (bR). The pK$_{a}$ of the Schiff base (SBH$^{+}$) of D193N was 10.1~10.0 (at XH$^{+}$) and 11.4~11.6 (at X) depending on the protonation state of a certain residue (designated by X) and independent on CI$^{[-10]}$ , while those of the wild-type and D193E were> 12. pK$_{a}$ of XH$^{+}$ were; 11.8~11.2 at the state of SB, 10.5 at SBH$^{+}$ state in the presence of CI$^{[-10]}$ , and 9.6 at SBH$^{+}$ without CI$^{[-10]}$ These imply the presence of a long-range interaction in the extracellular channel.r channel.
NEAR-IR POLARIMETRY AROUND 30 DORADUS: I. SEPARATION OF THE GALACTIC SOURCES
Kim, Jae-Yeong,Pak, Soo-Jong,Choi, Min-Ho,Kang, Won-Seok,Kandori, Ryo,Tamura, Motohide,Nagata, Tetsuya,Kwon, Jung-Mi,Kato, Daisuke,Jaffe, Daniel T. The Korean Astronomical Society 2011 Journal of The Korean Astronomical Society Vol.44 No.4
A $200'{\times}200'$ region around 30 Doradus in the Large Magellanic Cloud (LMC) is observed and analyzed in the near-infrared. We obtain polarimetry data in the J, H, and Ks bands using the SIRIUS polarimeter SIRPOL at the Infrared Survey Facility 1.4 m telescope. We measure the Stokes parameters of 2562 point-like sources to derive the degree of polarization and the polarization position angles. We discuss the statistics of the groups classified by color-magnitude diagram and proper motions of the sources, in order to separate the Galactic foreground sources from those present in the LMC. We notice that groups classified by the proper motion data show a tendency towards different polarimetric properties.