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- 저자 : 천두성(Doo Sung Chun) (검색결과 3 건)
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원주지역 설사 환자에서 분리한 Small Round Structured Viruses ( SRSV ) 염기서열 분석
지영미(Young Mi Jee),김기순(Gee Sun Kim),천두성(Doo Sung Chun),박정구(Jung Goo Park),강영화(Young Hwa Kang),정윤석(Yoon Suk Jung),고운영(Woon Young Ko),신영학(Young Hak Shin),윤재득(Jae Deuk Yoon) 대한바이러스학회 1999 Journal of Bacteriology and Virology Vol.29 No.4
Small round structured viruses (SRSV) are the major ethological agents which can cause outbreaks of non-bacterial gastroenteritis or food poisoning both in children and adults. The classification of family Caliciviridae to which SRSV belong, is based on the genome encoding three open reading frames. The rotavirus is another major pathogen which causes diarrhea in young children. We examined stool specimens obtained from diarrheal patients in Wonju from which bacterial pathogens were not found. To detect causative viruses from stool specimens of patients, reverse transcription (RT)-polymerase chain reaction (PCR) or nested PCR using rotavirus or SRSV specific primers was performed. In this study, RT-nested PCR procedure which can amplify a 330 bp fragment derived from RNA dependent RNA polymerase (RDRP) region within ORF1 was applied for the detection of SRSV. For the detection of rotaviruses, a 877 bp fragment from the VP4 region of rotavirus genome was amplified. As a result, rotavirus was not detected while SRSV sequences were detected from one out of five specimens. The nucleotide and amino acid sequences of the Wonju isolate were compared with other 6 Korean isolates which have been isolated and sequenced in our laboratory. Sequence analysis revealed that the Wonju isolate was rather distinct from other Korean isolates: the Wonju isolate was closer to genogroup I of SRSV while other 6 Korean isolates belonged to genogroup II.
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한국에서 분리된 콕사키 바이러스 B3 cDNA의 클로닝 및 전체 염기서열 분석
정윤석(Yoon Suk Jung),김기순(Gee Sun Kim),박정구(Jung Goo Park),이윤성(Yoon Sung Lee),신수연(Soo Yeon Shin),천두성(Doo Sung Chun),지영미(Young Mi Jee),김문보(Mun Bo Kim),나병국(Byung Gook Na),윤재득(Jae Deuk Yoon),이광호(Gwang Ho Lee 대한바이러스학회 2000 Journal of Bacteriology and Virology Vol.30 No.1
We have determined and analyzed the full-length cDNA sequence of a coxsackievirus B3 (CVB3) Korean isolate (CVB3-Korea/97) which has been known as a general human pathogen. The whole genome contains 7,400 nucleotides and has a single large open reading frame with 6,555 nucleotides that encodes a potential polyprotein precursor of 2,185 amino acids. The genome also contains a 5 non-coding region (NCR) of 741 bases and a 3' NCR of 104 bases followed by poly(A) tail. Sequence homologies of nucleotides and deduced amino acids between the CVB3-Korea/97 strain and the prototype (Nancy strain) were 81.7% and 91.5%, respectively. The genes encoding the functional proteins including viral protease and RNA dependent RNA polymerase showed higher homology than those encoding the structural proteins. We have further analyzed the sequences of 5' NCR, VP1 and VP2 of CVB3-Korea/97, which are known as cardiovirulent determining factors at the nucleotide and amino acid levels. Although the CVB 3-Korea/97 strain was isolated from an aseptic meningitis patient without cardiomyopathy, its 234th nucleotide and 165th amino acid were uracil and Asn as same as those of other cardiovirulent strains one. However, the 155th amino acid of VP1, which closely associated with cardiovirulence, was replaced with Arg by single nucleotide substitution from A2916 to T2916. Moreover, additional amino acid substitutions were observed in the flanking region of Asp155. Taken together, amino acid(s) substitution in VP1 may play a critical role in determining cardiovirulence of the CVB3- Korea/97 strain rather than individual nucleotide replacements in the 5' NCR and/or an amino acid substitution in VP2.
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두 개 학교에서 동시에 발생한 SRSV 감염증의 역학적 양상 및 바이러스의 유전적 양상
기현균,정영화,정재근,서진종,김선희,기혜영,천두성,지영미,하동룡 대한감염학회 2003 감염과 화학요법 Vol.35 No.2
배경 : SRSV는 바이러스에 의한 설사의 주요 원인병원체이다. 그러나 SRSV가 집단 식중독의 원인 병원체로 발견된 경우는 많지 않으며 특히 일정한 지역사회 내에서의 바이러스의 유전적인 다양성에 대한 연구는 없는 상황이다. 이러한 점에 착안하여 저자 등은 2개 학교에서 같은 시기에 동시에 발생한 SRSV 식중독의 역학적인 양상을 기술하며 식중독에서 나타난 SRSV의 유전학적인 변이를 기술하고자 한다. 방법 : 학교에서의 조사를 위하여 집단 식중독이 발생한 두 학교의 학생을 면접하여 인구학적 자료, 증상여부 및 증상의 종류, 섭취한 음식의 종류 등에 대하여 조사하였다. 미생물학적 검사를 위하여 4종의 세균과(Shigella spp. Salmonella spp. E. coli O157 : H7) 3종의 바이러스에 대하여 검사를 실시하였다(Norwalk agent, SRSV, adenovirus, and astrovirus). 결과 : 조사결과 두 학교에서의 증상자 수는 193명이었으며(193/2,843. 6.8%) 환자 증상일의 분포곡선은 단일정점을 보이는 양상이었다. 나타난 증상으로는 복통(176/193, 91.2%), 두통(111/193, 57.5%), 구토(102/193, 52.8%), 설사(83/193, 43.0%), 열감(79/193, 40.9%), 오심(73/193, 37.8%), 오한(49/193, 25.4%), 후중기의 순이었다(8/193, 4.1%). 실험실 검사결과 9건의 검체에서 SRSV가 PCR로 확인되었으며 RNA polymerase에 대한 DNA sequencing 결과 두 학교에서 각각 2개의 genogroup (Genogroup Ⅰ, Ⅱ)과 3개의 genotype이 발견되었다. 결론 : 본 연구결과 두 학교에서 동시에 발생한 SRSV에 의한 집단 감염증을 확인하였으며 3개의 다른 genotype을 각각의 학교에서 확인하였다. 본 연구의 의의는 같은 시기에 집단으로 발생한 SRSV 감염증이라도 서로 다른 유전형이 발견될 수 있음을 제시하였으며 추후 지역사회 및 국내에서의 SRSV 감염증에서 발견된 유전형과의 차이에 대한 연구가 진행되어야 함을 시사하는데 있다. Background: Small round structured virus (SRSV) is one of the common etiologic agents of viral gastroenteritis in childhood. However, SRSV has not easily been detected in many diarrheal outbreaks. Therefore, we experienced simultaneous outbreak of SRSV enteritis in two elementary schools, therefore, we analyzed the result of the surveillance. Methods: We interviewed the pupil of two schools and questioned their demographic data, presence of gastrointestinal symptoms, contact with symptomatic persons within the last two weeks, and dietary history within the last one week in school. The specimens of the symptomatic pupil were collected for identification of bacteria (Shigella spp, Salmonella spp, E.coli O157:H7) and viruses (Norwalk agent, SRSV, adenovirus, and astrovirus). Results: The number of symptomatic patients was 193 (193/2843, 6.8%) and the distribution of symptom onset was unipolar. Frequent symptoms of the patients were abdominal pain (176/193, 91.2%), headache (111/193, 57.5%), vomiting (102/193, 52.8%), diarrhea (83/ 193, 43.0%), febrile sense (79/193, 40.9%), nausea (73/193, 37.8%), chilling (49/193, 25.4%), and tenesmus (8/193, 4.1%). We identified SRSV in 9 cases by PCR method, and analyzed the RNA polymerase gene by DNA sequencing; 2 genogroup (Genogroup Ⅰ, Ⅱ) and 3 genotype. Conclusion: We confirmed SRSV enteritis with different genotypes in two concurrent outbreaks. DNA sequencing and comparison of genotype among the isolated SRSV in near future are be necessary
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