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        Multivariate Analysis of Laser-Induced Breakdown Spectroscopy Spectra of Soil Samples

        Yang, Ningfang,Eash, Neal S.,Lee, Jaehoon,Martin, Madhavi Z.,Zhang, Yong-Seon,Walker, Forbes R.,Yang, Jae E. Lippincott Williams Wilkins, Inc. 2010 Soil science Vol.175 No.9

        ABSTRACT: Laser-induced breakdown spectroscopy (LIBS) is a rapid quantitative analytical technique that can be used to determine the elemental composition of numerous sample matrices, and it has been successfully applied in many types of samples. However, for chemically and physically complex soil samples, its quantitative analytical ability is controversial. Multivariate analytical techniques have great potential for analyzing the complex LIBS spectra. To demonstrate the feasibility of LIBS as an alternative technique to quantitatively analyze soil samples, the univariate and the partial least square (PLS) techniques are used to analyze the LIBS spectra of 12 soil samples and to build calibration models predicting Cu and Zn concentrations. The results show that PLS can significantly improve the analytical results compared with the univariate technique. The normalized root mean square error (NRMSE) and r of the univariate models are 16.60% and 0.71 in calibration and 18.80% and 0.62 in prediction for Cu and 18.97% and 0.62 in calibration and 22.81% and 0.45 in prediction for Zn. For the PLS models using the spectral range 300 to 350 nm, the NRMSE and r are 1.94% and 0.99 for both Cu and Zn in calibration and 7.90% and 0.94 for Cu and 8.14% and 0.94 for Zn in prediction, respectively. Compared with the univariate technique, PLS improves the NRMSE 87.53% and 87.78% in calibration and 44.47% and 53.44% in prediction for Cu and Zn, respectively. The results indicate that PLS can improve the quantitative analytical ability of LIBS for soil sample analysis.

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        Selection of candidate genes affecting meat quality and preliminary exploration of related molecular mechanisms in the Mashen pig

        Pengfei Gao,Zhimin Cheng,Meng Li,Ningfang Zhang,Baoyu Le,Wanfeng Zhang,Pengkang Song,Xiaohong Guo,Bugao Li,Guoqing Cao 아세아·태평양축산학회 2019 Animal Bioscience Vol.32 No.8

        Objective: The aim of this study was to select the candidate genes affecting meat quality and preliminarily explore the related molecular mechanisms in the Mashen pig. Methods: The present study explored genetic factors affecting meat quality in the Mashen pig using RNA sequencing (RNA-Seq). We sequenced the transcriptomes of 180-day-old Mashen and Large White pigs using longissimus dorsi to select differentially expressed genes (DEGs). Results: The results indicated that a total of 425 genes were differentially expressed between Mashen and Large White pigs. A gene ontology enrichment analysis revealed that DEGs were mainly enriched for biological processes associated with metabolism and muscle development, while a Kyoto encyclopedia of genes and genomes analysis showed that DEGs mainly participated in signaling pathways associated with amino acid metabolism, fatty acid metabolism, and skeletal muscle differentiation. A MCODE analysis of the protein-protein interaction network indicated that the four identified subsets of genes were mainly associated with translational initiation, skeletal muscle differentiation, amino acid metabolism, and oxidative phosphorylation pathways. Conclusion: Based on the analysis results, we selected glutamic-oxaloacetic transaminase 1, malate dehydrogenase 1, pyruvate dehydrogenase 1, pyruvate dehydrogenase kinase 4, and activator protein-1 as candidate genes affecting meat quality in pigs. A discussion of the related molecular mechanisms is provided to offer a theoretical basis for future studies on the improvement of meat quality in pigs.

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