The effects of codon usage on the formation of secondary structures of nucleocapsid protein of peste des petits ruminants virus

Xiao‑xia Ma,Yi‑ning Wang,Xiao‑an Cao,Xue‑rui Li,Yong‑sheng Liu,Jian‑hua Zhou,Xue‑peng Cai 한국유전학회 2018 Genes & Genomics Vol.40 No.9

The nucleocapsid (N) protein of peste des petits ruminants virus (PPRV) with a conserved amino acid usage pattern plays an important role in viral replication. The primary objective of this study was to estimate roles of synonymous codon usages of PPRV N gene and tRNA abundances of host in the formation of secondary structure of N protein. The potential effects of synonymous codon usages of N gene and tRNA abundances of host on shaping different folding units (α-helix, β-strand and the coil) in N protein were estimated, based on the information about the modeling secondary structure of PPRV N protein. The synonymous codon usage bias was found in different folding units in PPRV N protein. To better understand the role of translation speed caused by variant tRNA abundances in shaping the specific folding unit in N protein, we modeled the changing trends of tRNA abundance at the transition boundaries from one folding unit to another folding unit (β-strand → coil, coil → β-strand, α-helix → coil, coil → α-helix). The obvious fluctuations of tRNA abundance were identified at the two transition boundaries (β-strand → coil and coil → β-strand) in PPRV N protein. Our findings suggested that viral synonymous codon usage bias and cellular tRNA abundance variation might have potential effects on the formation of secondary structure of PPRV N protein.

Fault Diagnosis of Wind Power Converters Based on Compressed Sensing Theory and Weight Constrained AdaBoost-SVM

Xiao-Xia Zheng,Peng Peng 전력전자학회 2019 JOURNAL OF POWER ELECTRONICS Vol.19 No.2

As the core component of transmission systems, converters are very prone to failure. To improve the accuracy of fault diagnosis for wind power converters, a fault feature extraction method combined with a wavelet transform and compressed sensing theory is proposed. In addition, an improved AdaBoost-SVM is used to diagnose wind power converters. The three-phase output current signal is selected as the research object and is processed by the wavelet transform to reduce the signal noise. The wavelet approximation coefficients are dimensionality reduced to obtain measurement signals based on the theory of compressive sensing. A sparse vector is obtained by the orthogonal matching pursuit algorithm, and then the fault feature vector is extracted. The fault feature vectors are input to the improved AdaBoost-SVM classifier to realize fault diagnosis. Simulation results show that this method can effectively realize the fault diagnosis of the power transistors in converters and improve the precision of fault diagnosis.

Hepatitis B Virus Infection Is Associated with Poor Prognosis in Patients with Advanced Non Small Cell Lung Cancer

Peng, Jie-Wen,Liu, Dong-Ying,Lin, Gui-Nan,Xiao, Jian-jun,Xia, Zhong-Jun Asian Pacific Journal of Cancer Prevention 2015 Asian Pacific journal of cancer prevention Vol.16 No.13

Background: Hepatitis B virus (HBV) infection has been reported to be associated with inferior prognosis in hepatocellular and pancreatic carcinoma cases, but has not been studied with respect to non small cell lung cancer (NSCLC). The purpose of this study was to investigate the prognostic significance of HBV infection in advanced NSCLC patients. Materials and Methods: A retrospective cohort of 445 advanced NSCLC patients was recruited at our hospital from January 1, 2003 until August 30, 2014. Serum HBV markers were tested by enzyme-linked immunosorbent assay. COX proportional hazards analysis was used to evaluate associations of HBV infection with overall survival (OS). Results: Of 445 patients who were qualified for the study, 68 patients were positive for HBsAg, also considered as HBV infection. Patients in HBsAg negative group were found to have better OS (12.6 months [12.2-12.9]) than those in HBsAg positive group (11.30 months [10.8-11.9]; p=0.001). Furthermore, COX multivariate analysis identified HBV infection as an independent prognostic factor for OS (HR 0.740 [0.560, 0.978], p=0.034). Conclusions: Our study found that HBsAg-positive status was an independent prognostic factor for OS in patients with advanced NSCLC. Future prospective studies are required to confirm our findings.

Part three: Community Health Education and Development : Tobacco Use Prevention and Control Among Adolescent in Yunnan

( Xiao Liang Li ),( Hao Peng Zhang ),( Ying Huang ),( Xia Xiao ) 한국환경보건학회(구-한국환경위생학회) 2004 Current Challenges and Advances in Environmental H Vol.- No.-

Pd Nanoparticles Self-Assembled on Fluorine-Modified MWCNTs as Electro-Catalysts for Methanol Electro-Oxidation

Xiao-Feng Zhang,Peng Dong,Ying-Jie Zhang,Xi-Kun Yang,Shu-Biao Xia,Zhen-Hua Jin,Ming-Li Xu 성균관대학교(자연과학캠퍼스) 성균나노과학기술원 2017 NANO Vol.12 No.3

Multi-walled carbon nanotubes (MWCNTs) were modified by hydrogen fluoride (HF) in a simple method. With the help of fluorine, Pd nanoparticles (3.9 nm) synthesized by a one-step photochemical reduction were uniformly self-assembled on the active sites of functionalized MWCNTs and a new catalyst (Pd/HF-MWCNT) was obtained. UV–Vis absorption spectra, transmission electron microscopy (TEM), scanning electron microscopy (SEM), X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS) were used. The results demonstrated that –F groups were introduced onto the surface of MWCNTs and C–F chemical bonds were formed. In addition, the electronic structure of Pd was changed. Pd–F coordination bond maybe formed between F atom and Pd atom. Cyclic voltammetry and chronoamperometry tests indicated that electrocatalytic activity of Pd/HF-MWCNTs catalyst for methanol in alkaline medium was about 1.6 times higher than that of the commercial Pd/C (JM) catalyst at the same condition. This new functionalized method has the advantages of simple step and safe operation. It is very significant to improve the wide application of MWCNTs and the commercial development of direct methanol fuel cells (DMFCs).

Effect of temperature on survival and immature development of Arma chinensis

Xia Peng-Liang,Wang Bo,Xie Xiao-Fei,Feng Yi,Huang Yong 한국응용곤충학회 2022 Journal of Asia-Pacific Entomology Vol.25 No.3

Arma chinensis (Fallou) is a predaceous pentatomid with the potential to control a wide range of insect pests. In this study, the stage-specific temperature-dependent development and survival of A. chinensis was investigated under seven constant temperatures (range 18–35 ◦ C) when fed with yellow mealworm (Tenebrio molitor L.). Developmental times (in days) for the immature stage, entire nymphal stage, and egg-to-adult development were inversely proportional to temperatures between 18 and 33 ◦ C (30 ◦ C for eggs and 1st instar nymphs). The lowest survival rate of A. chinensis was observed at 18 ◦ C (6.7%), whereas it was the highest (80–93.3%) at temperatures ranging from 21 to 24 ◦ C. The low temperature thresholds for the egg, entire nymph stage, and egg-to-adult development were 14.3, 12.28, and 12.8 ◦ C, respectively, while the thermal constants for these stages were estimated to be 85.47, 334.9, and 423.8 ◦ days. Among the three non-linear models examined, the Taylor model showed the best fit for the egg data, the Briére1 model was the best fit for the 1st instar nymph stage, and the Lactin1 model was more approprate for all the other instar stages, the entire nymphal stage, and overall development. The upper temperature thresholds estimated using the Lactin1 model for eggs, overall nymphal stage, and egg-to-adult development were 38.57, 38.9, and 40.0 ◦ C. The optimal temperature for the overall eggto-adult period was estimated to be 33.5 ◦ C. The results of this study can be used for the mass rearing of this natural pest enemy and development of phenology models of its seasonal progress.

Mitochondrial DNA Levels in Blood and Tissue Samples from Breast Cancer Patients of Different Stages

Xia, Peng,Wang, Hui-Juan,Geng, Ting-Ting,Xun, Xiao-Jie,Zhou, Wen-Jing,Jin, Tian-Bo,Chen, Chao Asian Pacific Journal of Cancer Prevention 2014 Asian Pacific journal of cancer prevention Vol.15 No.3

Aims: Alterations in mitochondrial DNA (mtDNA) have been implicated in carcinogenesis and tumor progression. We here evaluated the diagnostic and prognostic potential of mtDNA as a biomarker for breast cancer. Methods: Using multiplex real-time polymerase chain reaction, nuclear DNA (nDNA) and mtDNA levels in serum, buffy coat, tumor, and tumor-adjacent tissue samples from 50 breast cancer patients were determined and assessed for associations with clinicopathological features. To evaluate mtDNA as a biomarker for distinguishing between the four sample types, we created receiver operating characteristic (ROC) curves. Results: The mtDNA levels in buffy coat were significantly lower than in other sample types. Relative to tumor-adjacent tissue, reduced levels of mtDNA were identified in buffy coat and tumor tissue but not in serum. According to ROC curve analysis, mtDNA levels could be used to distinguish between buffy coat and tumor-adjacent tissue samples with good sensitivity (77%) and specificity (83%). Moreover, mtDNA levels in serum and tumor tissue were positively associated with cancer TMN stage. Conclusions: The mtDNA levels in blood samples may represent a promising, non-invasive biomarker in breast cancer patients. Additional, large-scale validation studies are required to establish the potential use of mtDNA levels in the early diagnosis and monitoring of breast cancer.

Effect of temperature on survival and immature development of Arma chinensis

Xia Peng-Liang,Wang Bo,Xie Xiao-Fei,Feng Yi,Huang Yong 한국응용곤충학회 2022 Journal of Asia-Pacific Entomology Vol.25 No.2

Arma chinensis (Fallou) is a predaceous pentatomid with the potential to control a wide range of insect pests. In this study, the stage-specific temperature-dependent development and survival of A. chinensis was investigated under seven constant temperatures (range 18–35 ◦ C) when fed with yellow mealworm (Tenebrio molitor L.). Developmental times (in days) for the immature stage, entire nymphal stage, and egg-to-adult development were inversely proportional to temperatures between 18 and 33 ◦ C (30 ◦ C for eggs and 1st instar nymphs). The lowest survival rate of A. chinensis was observed at 18 ◦ C (6.7%), whereas it was the highest (80–93.3%) at temperatures ranging from 21 to 24 ◦ C. The low temperature thresholds for the egg, entire nymph stage, and egg-to-adult development were 14.3, 12.28, and 12.8 ◦ C, respectively, while the thermal constants for these stages were estimated to be 85.47, 334.9, and 423.8 ◦ days. Among the three non-linear models examined, the Taylor model showed the best fit for the egg data, the Briére1 model was the best fit for the 1st instar nymph stage, and the Lactin1 model was more approprate for all the other instar stages, the entire nymphal stage, and overall development. The upper temperature thresholds estimated using the Lactin1 model for eggs, overall nymphal stage, and egg-to-adult development were 38.57, 38.9, and 40.0 ◦ C. The optimal temperature for the overall eggto-adult period was estimated to be 33.5 ◦ C. The results of this study can be used for the mass rearing of this natural pest enemy and development of phenology models of its seasonal progress.

Anti-inflammatory Activities of Lupane-triterpenoids In Vitro and Their Phytochemical Fingerprinting from Leaves of Acanthopanax gracilistylus

Xiao Jun Li,Ling Dai,Zhi Li,Xiao Dan Zhang,Xiang Qian Liu,Qin Peng Zou,Xia Xie 한국생약학회 2015 Natural Product Sciences Vol.21 No.2

The activities on the inhibition of NO on LPS-induced RAW 264.7 macrophages were investigated in this work. A simple and sensitive method has been developed and validated for fingerprinting analysis of leaves of Acanthopanax gracilistylus W.W. Smith (AGS). The cytotoxicity and inhibition of NO on LPS-induced RAW 264.7 cells of the extract and triterpenoids were determined. Optimal conditions of HPLC analysis were established as follows. The separation was performed with an ODS-C18 column at 30 oC, the detected wavelength was 210 nm, the flow rate was 1 mL/min, and the mobile phase consisted of acetonitrile (0.05% phosphoric acid) -0.05% phosphoric acid solution with gradient elution. Our results showed that impressic acid and acankoreaogenin was more effective on the inhibition of NO than the methanol extract and other compounds. There were seventeen peaks coexisted with similarities above 0.95 and nine lupane-triterpenoids including acankoreaogenin and impressic acid detected and identified. The result of anti-inflammatory activities provides a potential explanation for the use of AGS leaves as a herbal medicine in the treatment of inflammatory diseases. Our results also show that acankoreanogenin and impressic acid may be potentially useful in developing new anti-inflammatory agents. In addition, the fingerprint chromatography clearly illustrated and confirmed the material basis for the anti-inflammatory activities of this plant.

Aromatic Compounds from the Halotolerant Fungal Strain of Wallemia sebi PXP-89 in a Hypersaline Medium

Xiao-Ping Peng,Wei-Ming Zhu,Yi Wang,Pei-Pei Liu,Kui Hong,Hao Chen,Xia Yin 대한약학회 2011 Archives of Pharmacal Research Vol.34 No.6

A new cyclopentanopyridine alkaloid, 3-hydroxy-5-methyl-5,6-dihydro-7H-cyclopenta[b]pyridin-7-one (1), together with 11 known aromatic compounds were isolated from the secondary metabolites of the halotolerant fungal strain Wallemia sebi PXP-89 in 10% NaCl. Their structures including the absolute configurations of (2S,3S)-1-(4-hydroxyphenyl)butane-2,3-diol (2), (2R,3S)-1-(4-hydroxyphenyl)butane-2,3-diol (3), and (S)-3-hydroxy-4-(4-hydroxyphenyl)-2-one (4) were elucidated by spectroscopic analysis and a modified Mosher’s method. Compound 1 exhibited antimicrobial activity against Enterobacter aerogenes with a MIC of 76.7 μM. The absolute configurations of compounds 2-4 were determined for the first time.