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        Whole-genome bisulfite sequencing identified the key role of the Src family tyrosine kinases and related genes in systemic lupus erythematosus

        Fang Ting,Liu Suyi,Chen Liying,Ren Yating,Lu Dingqi,Yao Xinyi,Hong Tao,Zhang Xvfeng,Xie Zhimin,Yang Kepeng,Wang Xinchang 한국유전학회 2023 Genes & Genomics Vol.45 No.9

        Background As a multisystemic autoimmune illness, the basic mechanisms behind the pathophysiology of systemic lupus erythematosus (SLE) remain poorly understood. Objective We aimed to investigate the possible significance of SLE’s DNA methylation and gain further insight into potential SLE-related biomarkers and therapeutic targets. Methods We used whole genome bisulfite sequencing (WGBS) method to analyze DNA methylation in 4 SLE patients and 4 healthy people. Results 702 differentially methylated regions (DMRs) were identified, and 480 DMR-associated genes were annotated. We found the majority of the DMR-associated elements were enriched in repeat and gene bodies. The top 10 hub genes identified were LCK, FYB, PTK2B, LYN, CTNNB1, MAPK1, GNAQ, PRKCA, ABL1, and CD247. Compared to the control group, LCK and PTK2B had considerably decreased levels of mRNA expression in the SLE group. Receiver operating characteristic (ROC) curve suggested that LCK and PTK2B may be potential candidate biomarkers to predict SLE. Conclusions Our study improved comprehension of the DNA methylation patterns of SLE and identified potential biomarkers and therapeutic targets for SLE.

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        Characterizing the interaction relationship of the microbial communities between Zaopei and pit mud disturbing by Daqu

        Suqi Chen,Jun Huang,Hui Qin,Rongqing Zhou,Yan Yang,Chuanfeng Qiu,Suyi Zhang 한국식품과학회 2021 Food Science and Biotechnology Vol.30 No.10

        The differences of interaction between interphasemicrobial communities were evaluated caused bytwo kinds of Daqu, including conventional Daqu (CDQ)and fortified Daqu (FDQ). The community diversity,functional genera and metabolites in pit mud (PM) andZaopei (ZP) were investigated by polyphasic detectingapproaches. FDQ evolved the core microbial communityfitting Baijiu brewing faster than CDQ. Compared withCPM, the abundance of Aspergillus, Hyphopichia, andPenicillium in FPM were 1.54, 14.75, and 1.68 times, whilethat of Lactobacillus, Bacillus, Methanobrevibacter, andMethanosaeta were 2.13, 1.85, 6.35, and 3.36 times,respectively. Furthermore, the content of key flavor componentswas increased in ZP using FDQ. These resultssuggested the interaction between interphase microbialcommunities in various phases of Baijiu fermentationniches was significant influenced by Daqu. It can not onlyenhance the key volatiles in ZP but also evolve the communityto fit Baijiu fermentation by introducing functionalgenera to Daqu.

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