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        Identification and co-expression network analysis of plumule-preferentially expressed genes in Oryza sativa

        Sun Guilian,Wu Zongmin,Zhai Lisheng,Yi Yin,Yan Huiqing,Huang Xiaolong 한국유전학회 2023 Genes & Genomics Vol.45 No.3

        Background The seedling establishment is controlled by the programmed expression of sets of genes at the specific tissues of seed, abundance and environment. Plumule is an important part of the seed embryo and expresses the suits of genes to exert distinct functions during seed germination. Although rice genomic resources are available and developed rapidly, thousands of transcripts have not previously been located in the plumule of rice. Objective This study was performed to identify plumule-preferentially expressed (OsPluP) genes in rice and determine the expression profiles and functions of OsPluP genes. Methods We identified the OsPluP genes through Affymetrix microarray data. Meanwhile, qRT-PCR was performed to validate the expression pattern, also found that OsPluP genes were regulated by dark/light treatment. The cis-acting regulatory elements were analyzed in the promoters’ regions of OsPluP genes. The T-DNA mutant of the OsPluP seed was used to reveal the function in seed germination. Results In this study, a genomic survey of OsPluP genes was performed, and we identified 88 OsPluP genes based on Affymetrix microarray data. The expression profiles of 88 OsPluP members in 24 representative tissues covering rice whole life cycle can be roughly classified into three major groups, suggesting functional divergence of OsPluP genes in seed germination. The microarray data, qRT-PCR, and promoter analysis results demonstrated that transcripts of more than half OsPluPs (54 genes) could be enhanced in the darkness and respond to phytohormone. Gene Ontology (GO)and Kyoto encyclopedia of genes and genomes (KEGG) analysis demonstrated that OsPluP and their co-expressed genes were highly enriched in fatty acid metabolism. Moreover, OsPluP82 T-DNA mutant seeds displayed short plumule length and storage lipid accumulation. Conclusion This study would enable the functions of OsPluP genes during seed germination and contribute to the goal of molecular regulatory networks that lay the foundation for further studies of seedling growth.

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        Robust Finite Time Stability of Fractional-order Linear Delayed Systems with Nonlinear Perturbations

        Liping Chen,Yigang He,Ranchao Wu,Yi Chai,Lisheng Yin 제어·로봇·시스템학회 2014 International Journal of Control, Automation, and Vol.12 No.3

        This letter is concerned with robust stability of fractional-order linear delayed system with nonlinear perturbations over finite time interval. By using inequality technique, two new sufficient conditions for the finite time stability for such systems with order and are presented, respectively. A numerical example is presented to demonstrate the validity and feasibility of the obtained results.

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