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        Comparative study of ammonium transporters in different organisms by study of a large number of structural protein features via data mining algorithms

        Ehsan Tahrokh,Mansour Ebrahimi,Mahdi Ebrahimi,Fatemeh Zamansani,Narjes Rahpeyma Sarvestani,Manijeh Mohammadi-Dehcheshmeh,Mohammad Reza Ghaemi,Esmaeil Ebrahimie 한국유전학회 2011 Genes & Genomics Vol.33 No.5

        Ammonium is an excellent nitrogen source, and ammonium transfer is a fundamental process in most organisms. Membrane transport of ammonium is the key component of nitrogen metabolism mediated by Ammonium Transporter/Methylamine Permease/Rhesus (AMT/MEP/Rh) protein family. Ammonium transporters play different physiological roles in various organisms. Here, we looked at the protein characteristics of ammonium transporters in different organisms to create a link between protein characteristics and the organism. In order to increase the accuracy and precision of the employed models,for the first time, an attempt was made to cover all structural aspects of ammonium transporters in animals, bacteria, fungi,plants, and human by extracting and calculating 874 protein attributes of primary, secondary, and tertiary structures for each ammonium transporter. Then, various weighting and modeling algorithms were applied to determine how structural protein features change between organisms. Considering a large number of protein attributes made it possible to detect key protein characteristics in the structure of ammonium transporters. The results, for the first time, indicated that His-based features including count/frequency of His and frequency/count of Ile-His were the most significant features generating different types of ammonium transporters within organisms. Within different tested models, the C5.0 model was the most efficient and precise model for discrimination of organism type, based on ammonium transporter sequence, with the precision of 94.85%. The determination of protein characteristics of ammonium transporters in different organisms provides a new vista for understanding the evolution of transporters based on the modulation of protein characteristics and facilitates engineering of new transporters. In our point of view, dissecting a large number of structural protein characteristics through data mining algorithms provides a novel functional strategy for studying evolution and phylogeny. This research will serve as a basis for future studies on engineering novel ammonium transporters.

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        Electrochemical degradation of the Acid Orange 10 dye on a Ti/PbO2 anode assessed by response surface methodology

        Afshin Ebrahimi,Gholamreza Bonyadinejad,Mansour Sarafraz,Mohsen Khosravi,Seyed Mahmood Taghavi-Shahri,Roya Nateghi,Sedighe Rastaghi 한국화학공학회 2016 Korean Journal of Chemical Engineering Vol.33 No.1

        The decolorization and degradation of the synthetic aqueous solution of the Acid Orange 10 (AO10) dye on Ti/PbO2 anode were investigated using the response surface methodology based on central composite design with three variables: current density, pH, and supporting electrolyte concentration. The Ti/PbO2 electrode was prepared by the electrochemical deposition method. The optimum conditions for AO10 decolorization in synthetic dye solution were electrolyte concentration of 117.04 mM, pH of 12.05, and current density of 73.64 mA cm−2. The results indicated that the most effective factor for AO10 degradation was current density. Furthermore, the color removal efficiency significantly increased with increasing current density. To measure AO10 mineralization under optimum conditions, the chemical oxygen demand (COD) and total organic carbon (TOC) removal were evaluated. Under these conditions, decolorization was completed and 63% removal was recorded for COD and 60% for TOC after 100 min of electrolysis.

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        Effect of calcium on premenstrual syndrome: A double-blind randomized clinical trial

        ( Fatemeh Shobeiri ),( Fahimeh Ezzati Araste ),( Reihaneh Ebrahimi ),( Ensiyeh Jenabi ),( Mansour Nazari ) 대한산부인과학회 2017 Obstetrics & Gynecology Science Vol.60 No.1

        Objective Premenstrual syndrome (PMS) affects millions of women and is known as the most important disorder among them. The very aim of the present study was to evaluate the effects of low dose calcium on severity of PMS. Methods This study can be considered as a double-blind randomized clinical trial. Female students of Hamadan University of Medical Sciences diagnosed with PMS in 2014 participated in the present study. Sixty-six female students diagnosed with PMS were involved in the experimental and control groups. The participants were randomly assigned into two groups to receive 500 mg of calcium daily or placebo for two months. Severity of PMS was detected by Daily Record of Severity of Problems, which was used to measure symptoms during one menstrual cycle before and two menstrual cycles after the intervention. Results No signifcant differences were observed in the mean scores of PMS symptoms between calcium and placebo groups before the treatment (P=0.74). However, signifcant differences were noticed between the two intervention groups in the first (P=0.01) and second menstrual cycles (P=0.001) after the intervention. The differences were significant in subgroups of anxiety, depression, emotional changes, water retention, and somatic changes in calcium group compared with placebo group in the menstrual cycle before the intervention and two menstrual cycles after the intervention and among menstrual cycles (0, cycle 1, cycle 2) in calcium group (P=0.01). Conclusion Overall, the results of the present study suggest that treatment with calcium supplements is an effective method for reducing mood disorders during PMS.

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