Bioinformatics in rice research : theories and techniques

목차 (Table of Contents)

• CONTENTS
• Part I. Introduction
• 1 Introduction to Bioinformatics / Manoj Kumar Gupta ; Lambodar Behera = 3
• 2 Statistics for Bioinformatics / Manoj Kumar Gupta ; Gayatri Gouda ; Ravindra Donde ;
• S. Sabarinathan ; Goutam Kumar Dash ; Menaka Ponnana ; Pallabi Pati ;
• Sushil Kumar Rathore ; Ramakrishna Vadde ; Lambodar Behera = 21
• 3 Introduction of the Databases of Rice / Gayatri Gouda ; S. Sabarinathan ; Ravindra Donde ;
• Goutam Kumar Dash ; Menaka Ponnana ; Manoj Kumar Gupta ;
• Ramakrishna Vadde ; Lambodar Behera ; Trilochan Mohapatra = 51
• 4 Brief Insight into the Evolutionary History and Domestication
• of Wild Rice Relatives / Manoj Kumar Gupta ; Gayatri Gouda ; S. Sabarinathan ;
• Ravindra Donde ; Goutam Kumar Dash ; Menaka Ponnana ;
• Pallabi Pati ; Sushil Kumar Rathore ; Ramakrishna Vadde ; Lambodar Behera = 71
• 5 3000 Genome Project : A Brief Insight / Manoj Kumar Gupta ; Gayatri Gouda ; Ravindra Donde ;
• S. Sabarinathan ; Goutam Kumar Dash ; N. Rajesh ; Menaka Ponnana ;
• Pallabi Pati ; Sushil Kumar Rathore ; Ramakrishna Vadde ; Lambodar Behera = 89
• Part II. Bioinformatics Analysis of Genomic and Proteomic Sequences
• 6 Databases and Bioinformatics Tools for Data Mining / Pallabi Pati ; Sushil Kumar Rathore ; Manoj Kumar Gupta = 103
• 7 Sequence Alignment / Manoj Kumar Gupta ; Gayatri Gouda ; N. Rajesh ; Ravindra Donde ;
• S. Sabarinathan ; Pallabi Pati ; Sushil Kumar Rathore ;
• Ramakrishna Vadde ; Lambodar Behera = 129
• 8 Gene Identification and Structure Annotation / Puja Sashankar ; Santhosh N Hegde ; N. Sathyanarayana = 163
• 9 Phylogenetic Analysis / Manoj Kumar Gupta ; Gayatri Gouda ; S. Sabarinathan ;
• Ravindra Donde ; N. Rajesh ; Pallabi Pati ; Sushil Kumar Rathore ;
• Lambodar Behera ; Ramakrishna Vadde = 179
• 10 RNA Structure Prediction / Manoj Kumar Gupta ; Gayatri Gouda ; Ravindra Donde ;
• Piyali Goswami ; N. Rajesh ; Pallabi Pati ; Sushil Kumar Rathore ;
• Ramakrishna Vadde ; Lambodar Behera = 209
• 11 Structural Proteomics / Manoj Kumar Gupta ; Gayatri Gouda, S. Sabarinathan ;
• Ravindra Donde ; Pallabi Pati ; Sushil Kumar Rathore ;
• Ramakrishna Vadde ; Lambodar Behera = 239
• 12 Gene Ontology and Pathway Enrichment Analysis / Manoj Kumar Gupta, Gayatri Gouda, S. Sabarinathan,
• Ravindra Donde ; Goutam Kumar Dash ; Ramakrishna Vadde ; Lambodar Behera = 257
• Part III. High Throughput Technologies
• 13 High-Throughput Sequencing Technologies / Elakkiya Elumalai ; Krishna Kant Gupta = 283
• 14 Mapping Algorithms in High-Throughput Sequencing / Manoj Kumar Gupta ; Gayatri Gouda ; S. Sabarinathan ;
• Ravindra Donde ; Ramakrishna Vadde ; Lambodar Behera = 305
• 15 DNA-Protein Interaction Analysis / Piyali Goswami = 325
• 16 RNA-Protein Interaction Analysis / Sushil Kumar Rathore ; Pallabi Pati = 335
• 17 SNP Identification and Discovery / Christian Bharathi Antony Raj ; Hemavathy Nagarajan ;
• Mohamed Hameed Aslam ; Santhiya Panchalingam = 361
• 18 Microsatellite Markers from Whole Genome and Transcriptomic
• Sequences / Manoj Kumar Gupta ; Ravindra Donde ; S. Sabarinathan ;
• Gayatri Gouda ; Goutam Kumar Dash ; Pallabi Pati ;
• Sushil Kumar Rathore ; Ramakrishna Vadde ;
• Priyadarsini Sanghamitra ; C. Parameswaran ; Lambodar Behera = 387
• 19 Status and Prospectives of Genome-Wide Association Studies
• in Plants / Goutam Kumar Dash ; S. Sabarinathan ; Ravindra Donde ;
• Gayatri Gouda ; Manoj Kumar Gupta ; Lambodar Behera ; Padmini Swain = 413
• 20 Expression Profiling and Discovery of microRNA / N. Rajesh ; Manoj Kumar Gupta ; Ravindra Donde ; S. Sabarinathan ; Gayatri Gouda ; Goutam Kumar Dash ; Menaka Ponnana ;
• Lambodar Behera ; Ramakrishna Vadde = 459
• 21 Computational Approaches in Identifying Long
• Non-coding RNA / Manoj Kumar Gupta ; N. Rajesh ; S. Sabarinathan ; Gayatri Gouda ;
• Ravindra Donde ; Menaka Ponnana ; Goutam Kumar Dash ;
• Pallabi Pati ; Sushil Kumar Rathore ; Ramakrishna Vadde ; Lambodar Behera = 487
• 22 Circular RNA in Rice (Oryza sativa) / Maryam Moazzam-Jazi ; Vahideh Hedayati ; Sohrab Moradi = 507
• 23 Application of Metagenomics in Improvement of Rice / Pallabi Pati ; Gayatri Gouda ; Sushil Kumar Rathore = 527
• 24 RNA-Induced Gene Silencing / Piyali Goswami = 541
• 25 Single-Cell RNA Sequencing Technologies / Manoj Kumar Gupta ; Gayatri Gouda ; Ravindra Donde ;
• S. Sabarinathan ; Piyali Goswami ; Goutam Kumar Dash ; N. Rajesh ;
• Pallabi Pati ; Sushil Kumar Rathode ; Ramakrishna Vadde ; Lambodar Behera = 555
• 26 Recent Advancement in NGS Technologies / Abhilek Kumar Nautiyal ; Vishal Ahuja ; Siddheshwar Kshirsagar ; Diptarka Dasgupta = 585