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      RESEARCH : Open Access : GAPDH, β-actin and β2-microglobulin, as three common reference genes, are not reliable for gene expression studies in equine adipose- and marrow-derived mesenchymal stem cells = RESEARCH : Open Access : GAPDH, β-actin and β2-microglobulin, as three common reference genes, are not reliable for gene expression studies in equine adipose- and marrow-derived mesenchymal stem cells

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      https://www.riss.kr/link?id=A100517704

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      다국어 초록 (Multilingual Abstract)

      Background: Quantitative real time reverse transcription PCR (qRT-PCR) is one of the most important techniques for gene-expression analysis in molecular based studies. Selecting a proper internal control gene for normalizing data is a crucial step in ...

      Background: Quantitative real time reverse transcription PCR (qRT-PCR) is one of the most important techniques for gene-expression analysis in molecular based studies. Selecting a proper internal control gene for normalizing data is a crucial step in gene expression analysis via this method. The expression levels of reference genes should be remained constant among cells in different tissues. However, it seems that the location of cells in different tissues might influence their expression. The purpose of this study was to determine whether the source of mesenchymal stem cells (MSCs) has any effect on expression level of three common reference genes (GAPDH, β-actin and β2-microglobulin) in equine marrow- and adipose- derived undifferentiated MSCs and consequently their reliability for comparative qRT-PCR. Materials and methods: Adipose tissue (AT) and bone marrow (BM) samples were harvested from 3 mares. MSCs were isolated and cultured until passage 3 (P3). Total RNA of P3 cells was extracted for cDNA synthesis. The generated cDNAs were analyzed by quantitative real-time PCR. The PCR reactions were ended with a melting curve analysis to verify the specificity of amplicon. Results: The expression levels of GAPDH were significantly different between AT- and BM- derived MSCs (p < 0.05). Differences in expression level of β-actin (P < 0.001) and B2M (P < 0.006.) between MSCs derived from AT and BM were substantially higher than GAPDH. In addition, the fold change in expression levels of GAPDH, β-actin and B2M in AT-derived MSCs compared to BM-derived MSCs were 2.38, 6.76 and 7.76, respectively. Conclusion: This study demonstrated that GAPDH and especially β-actin and B2M express in different levels in equine AT- and BM- derived MSCs. Thus they cannot be considered as reliable reference genes for comparative quantitative gene expression analysis in MSCs derived from equine bone marrow and adipose tissue.

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      참고문헌 (Reference)

      1 Zhu Y, "β2-Microglobulin as a potential factor for the expansion of mesenchymal stem cells" 31 (31): 1361-1365, 2009

      2 Glare EM, "β-Actin and GAPDH housekeeping gene expression in asthmatic airways is variable and not suitable for normalising mRNA levels" 57 (57): 765-770, 2002

      3 Josson S, "b2-microglobulin induces epithelial to mesenchymal transition and confers cancer lethality and bone metastasis in human cancer cells" 17 (17): 2600-2610, 2011

      4 Ragni E, "What is beyond a qRT‐PCR study on mesenchymal stem cell differentiation properties : how to choose the most reliable housekeeping genes" 17 (17): 168-180, 2013

      5 Bustin SA, "The MIQE guidelines : minimum information for publication of quantitative real-time PCR experiments" 55 (55): 611-622, 2009

      6 Radcliffe CH, "Temporal analysis of equine bone marrow aspirate during establishment of putative mesenchymal progenitor cell populations" 19 (19): 269-282, 2010

      7 Strioga M, "Same or not the same? Comparison of adipose tissue-derived versus bone marrow-derived mesenchymal stem and stromal cells" 21 (21): 2724-2752, 2012

      8 Huggett J, "Real-time RT-PCR normalisation;strategies and considerations" 6 (6): 279-284, 2005

      9 Dorak MT, "Real-Time PCR" Taylor & Francis Group 2006

      10 Lupberger J, "Quantitative analysis of beta-actin, beta-2-microglobulin and porphobilinogen deaminase mRNA and their comparison as control transcripts for RT-PCR" 16 (16): 25-30, 2002

      1 Zhu Y, "β2-Microglobulin as a potential factor for the expansion of mesenchymal stem cells" 31 (31): 1361-1365, 2009

      2 Glare EM, "β-Actin and GAPDH housekeeping gene expression in asthmatic airways is variable and not suitable for normalising mRNA levels" 57 (57): 765-770, 2002

      3 Josson S, "b2-microglobulin induces epithelial to mesenchymal transition and confers cancer lethality and bone metastasis in human cancer cells" 17 (17): 2600-2610, 2011

      4 Ragni E, "What is beyond a qRT‐PCR study on mesenchymal stem cell differentiation properties : how to choose the most reliable housekeeping genes" 17 (17): 168-180, 2013

      5 Bustin SA, "The MIQE guidelines : minimum information for publication of quantitative real-time PCR experiments" 55 (55): 611-622, 2009

      6 Radcliffe CH, "Temporal analysis of equine bone marrow aspirate during establishment of putative mesenchymal progenitor cell populations" 19 (19): 269-282, 2010

      7 Strioga M, "Same or not the same? Comparison of adipose tissue-derived versus bone marrow-derived mesenchymal stem and stromal cells" 21 (21): 2724-2752, 2012

      8 Huggett J, "Real-time RT-PCR normalisation;strategies and considerations" 6 (6): 279-284, 2005

      9 Dorak MT, "Real-Time PCR" Taylor & Francis Group 2006

      10 Lupberger J, "Quantitative analysis of beta-actin, beta-2-microglobulin and porphobilinogen deaminase mRNA and their comparison as control transcripts for RT-PCR" 16 (16): 25-30, 2002

      11 Nolan T, "Quantification of mRNA using real-time RT-PCR" 1 (1): 1559-1582, 2006

      12 Sirover MA, "New insights into an old protein : the functional diversity of mammalian glyceraldehyde-3-phosphate dehydrogenase" 1432 (1432): 159-184, 1999

      13 Bursten S, "Mesangial cell activation by bacterial endotoxin. Induction of rapid cytoskeletal reorganization and gene expression" 139 (139): 371-, 1991

      14 De Schauwer C, "Markers of stemness in equine mesenchymal stem cells : a plea for uniformity" 75 (75): 1431-1443, 2011

      15 Campioni D, "Loss of Thy-1(CD90)antigen expression on mesenchymal stromal cells from hematologic malignancies is induced by in vitro angiogenic stimuli and is associated with peculiar functional and phenotypic characteristics" 10 (10): 69-82, 2008

      16 Smith RKW, "Isolation and implantation of autologous equine mesenchymal stem cells from bone marrow into the superficial digital flexor tendon as a potential novel treatment" 35 (35): 99-102, 2003

      17 Zahedi M, "Isolation and characterization of horse bone marrow mesenchymal stem cells for treatment of joint injuries: an animal model for human studies" 37 (37): A50-, 2013

      18 Li Y, "Insulin-like growth factor 1enhances the migratory capacity of mesenchymal stem cells" 356 : 780-784, 2007

      19 Kim JW, "Increased glyceraldehyde-3-phosphate dehydrogenase gene expression in human cervical cancers" 71 (71): 266-269, 1998

      20 Bustin S, "Improving the analysis of quantitative PCR data in veterinary research" 191 (191): 279-281, 2012

      21 Ranera B, "Immunophenotype and gene expression profiles of cell surface markers of mesenchymal stem cells derived from equine bone marrow and adipose tissue" 144 : 147-154, 2011

      22 Amable PR, "Identification of appropriate reference genes for human mesenchymal cells during expansion and differentiation" 8 (8): e73792-, 2013

      23 Al-Nbaheen M, "Human stromal(mesenchymal)stem cells from bone marrow, adipose tissue and skin exhibit differences in molecular phenotype and differentiation potential" 9 (9): 32-43, 2013

      24 Thellin O, "Housekeeping genes as internal standards: use and limits" 75 (75): 291-295, 1999

      25 Lin J, "Histological evidence : housekeeping genes beta-actin and GAPDH are of limited value for normalization of gene expression" 222 (222): 369-376, 2012

      26 Burk J, "Growth and differentiation characteristics of equine mesenchymal stromal cells derived from different sources" 195 (195): 98-106, 2013

      27 Barber RD, "GAPDH as a housekeeping gene : analysis of GAPDH mRNA expression in a panel of 72 human tissues" 21 (21): 389-395, 2005

      28 Hjertner B, "Expression of reference genes and T helper 17 associated cytokine genes in the equine intestinal tract" 197 (197): 817-823, 2013

      29 Alipour F, "Equine adipose-derived mesenchymal stem cells : phenotype and growth characteristics, gene expression profile and differentiation potentials" 16 (16): 456-465, 2015

      30 Schmittgen TD, "Effect of experimental treatment on housekeeping gene expression : validation by real-time, quantitative RT-PCR" 46 (46): 69-81, 2000

      31 Nixon AJ, "Effect of adipose-derived nucleated cell fractions on tendon repair in horses with collagenase-induced tendinitis" 69 (69): 928-937, 2008

      32 Sánchez-Matamoros A, "Development and evaluation of a SYBR Green real-time RT-PCR assay for evaluation of cytokine gene expression in horse" 61 (61): 50-53, 2013

      33 Zhang YW, "Determination of internal control for gene expression studies in equine tissues and cell culture using quantitative RT-PCR" 130 : 114-119, 2009

      34 Chooi WH, "Determination and validation of reference gene stability for qPCR analysis in polysaccharide hydrogel-based 3D chondrocytes and mesenchymal stem cell cultural models" 54 (54): 623-633, 2013

      35 Lee PD, "Control genes and variability : absence of ubiquitous reference transcripts in diverse mammalian expression studies" 12 (12): 292-297, 2002

      36 Koch TG, "Concepts for the clinical use of stem cells in equine medicine" 49 (49): 1009-, 2008

      37 Ranera B, "Comparative study of equine bone marrow and adipose tissue-derived mesenchymal stromal cells" 44 : 33-42, 2012

      38 Kern S, "Comparative analysis of mesenchymal stem cells from bone marrow, umbilical cord blood, or adipose tissue" 24 : 1294-1301, 2006

      39 Russell KC, "Clonal analysis of the proliferation potential of human bone marrow mesenchymal stem cells as a function of potency" 108 (108): 2716-2726, 2011

      40 Radtke CL, "Characterization and osteogenic potential of equine muscle tissue–and periosteal tissue–derived mesenchymal stem cells in comparison with bone marrow–and adipose tissue–derived mesenchymal stem cells" 74 (74): 790-800, 2013

      41 Lee R, "Characterization and expression analysis of mesenchymal stem cells from human bone marrow and adipose tissue" 14 : 311-324, 2004

      42 Alves AG, "Cell-based therapies for tendon and ligament injuries" 27 (27): 315-333, 2011

      43 Nomura T, "B2-Microglobulinmediated Signaling as a Target for Cancer Therapy" 14 : 343-352, 2014

      44 Schmittgen TD, "Analyzing real-time PCR data by the comparative CT method" 3 (3): 1101-1108, 2008

      45 Vandesompele J, "Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes" 3 (3): 0034-, 2002

      46 Bustin SA, "Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays" 25 (25): 169-193, 2000

      47 Pfaffl MW, "A new mathematical model for relative quantification in real-time RT-PCR" 29 (29): e45-, 2001

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2022 평가예정 계속평가 신청대상 (등재유지)
      2017-05-24 학회명변경 한글명 : 한국동물자원과학회 -> 한국축산학회
      영문명 : 미등록 -> Korean Society of Animal Sciences and Technology
      2017-04-28 학술지명변경 한글명 : 한국동물자원과학회지 -> 한국축산학회지
      2017-01-01 평가 우수등재학술지 선정 (계속평가)
      2013-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2010-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2006-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2001-07-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      1999-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      학술지 인용정보

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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.28 0.28 0.27
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.31 0.31 0.526 0.15
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