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    Development of Orthogonal Aminoacyl tRNA Synthetase Mutant with Enhanced Incorporation Ability with Para-azido-L-phenylalanine

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    https://www.riss.kr/link?id=A108657476

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    다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

    Orthogonal aminoacyl tRNA synthetase (aaRS)/ tRNA pairs are an efficient tool for the site-specific introduction of para-azido-L-phenylalanine (pAzF), a noncanonical amino acid, into the amber codon of proteins. In the present study, to improve amber suppression by aaRS, random mutagenesis using error-prone polymerase chain reaction method was carried out, and mutants with enhanced pAzF-incorporation ability were selected using fluorescence-activated cell sorting (FACS). For screening, the mutant superfolder green fluorescent protein with an amber codon was used as the reporter. Furthermore, the predicted structure of resulting aaRS mutants were analyzed. Three aaRS mutants — K776, K801, and M320 — showed 2.9-, 1.5-, and 3.7-times greater pAzF-incorporation ability, respectively, than did the control. The mutants also exhibited increased selectivity for pAzF introduction. The predicted protein models for the aaRS mutants showed that mutations in the anticodon and acceptor stem of the tRNA recognition region affected the tRNA binding affinity. These results demonstrate that random mutagenesis can cover the missed possibility of rational design or site directed mutagenesis, and screening with FACS is an efficient and rapid method for the evolution of aaRS. It can be also utilized for the development of other proteins with a variety of non-canonical amino acids.
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    Orthogonal aminoacyl tRNA synthetase (aaRS)/ tRNA pairs are an efficient tool for the site-specific introduction of para-azido-L-phenylalanine (pAzF), a noncanonical amino acid, into the amber codon of proteins. In the present study, to improve amber ...

    Orthogonal aminoacyl tRNA synthetase (aaRS)/ tRNA pairs are an efficient tool for the site-specific introduction of para-azido-L-phenylalanine (pAzF), a noncanonical amino acid, into the amber codon of proteins. In the present study, to improve amber suppression by aaRS, random mutagenesis using error-prone polymerase chain reaction method was carried out, and mutants with enhanced pAzF-incorporation ability were selected using fluorescence-activated cell sorting (FACS). For screening, the mutant superfolder green fluorescent protein with an amber codon was used as the reporter. Furthermore, the predicted structure of resulting aaRS mutants were analyzed. Three aaRS mutants — K776, K801, and M320 — showed 2.9-, 1.5-, and 3.7-times greater pAzF-incorporation ability, respectively, than did the control. The mutants also exhibited increased selectivity for pAzF introduction. The predicted protein models for the aaRS mutants showed that mutations in the anticodon and acceptor stem of the tRNA recognition region affected the tRNA binding affinity. These results demonstrate that random mutagenesis can cover the missed possibility of rational design or site directed mutagenesis, and screening with FACS is an efficient and rapid method for the evolution of aaRS. It can be also utilized for the development of other proteins with a variety of non-canonical amino acids.

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    참고문헌 (Reference)

    1 Ma, J. S., "Versatile strategy for controlling the specificity and activity of engineered T cells" 113 : E450-E458, 2016

    2 Beuning, P. J., "Transfer RNA recognition by aminoacyl-tRNA synthetases" 52 : 1-28, 1999

    3 Kobayashi, T., "Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion" 10 : 425-432, 2003

    4 Shah, U. H., "Site-specific incorporation of genetically encoded photo-crosslinkers locates the heteromeric interface of a GPCR complex in living cells" 27 : 1308-1317.e4, 2020

    5 Lim, S. I., "Site-specific albumination of a therapeutic protein with multi-subunit to prolong activity in vivo" 207 : 93-100, 2015

    6 카나가벨디판쿠마 ; Nadarajan Saravanan Prabhu ; 김준형 ; 윤형돈, "Protein Engineering for Covalent Immobilization and Enhanced Stability through Incorporation of Multiple Noncanonical Amino Acids" 한국생물공학회 22 (22): 248-255, 2017

    7 Mishra, P. K., "Photo-crosslinking: an emerging chemical tool for investigating molecular networks in live cells" 21 : 924-932, 2020

    8 Cho, H., "Optimized clinical performance of growth hormone with an expanded genetic code" 108 : 9060-9065, 2011

    9 Ji Yeol Roh ; Bon-Chul Koo ; Mo Sun Kwon ; Minjee Kim ; 김남형 ; 김태완, "Modification of Enhanced Green Fluorescent Protein for Secretion out of Cells" 한국생물공학회 18 (18): 1135-1141, 2013

    10 Futran, A. S., "Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking" 112 : 8590-8595, 2015

    1 Ma, J. S., "Versatile strategy for controlling the specificity and activity of engineered T cells" 113 : E450-E458, 2016

    2 Beuning, P. J., "Transfer RNA recognition by aminoacyl-tRNA synthetases" 52 : 1-28, 1999

    3 Kobayashi, T., "Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion" 10 : 425-432, 2003

    4 Shah, U. H., "Site-specific incorporation of genetically encoded photo-crosslinkers locates the heteromeric interface of a GPCR complex in living cells" 27 : 1308-1317.e4, 2020

    5 Lim, S. I., "Site-specific albumination of a therapeutic protein with multi-subunit to prolong activity in vivo" 207 : 93-100, 2015

    6 카나가벨디판쿠마 ; Nadarajan Saravanan Prabhu ; 김준형 ; 윤형돈, "Protein Engineering for Covalent Immobilization and Enhanced Stability through Incorporation of Multiple Noncanonical Amino Acids" 한국생물공학회 22 (22): 248-255, 2017

    7 Mishra, P. K., "Photo-crosslinking: an emerging chemical tool for investigating molecular networks in live cells" 21 : 924-932, 2020

    8 Cho, H., "Optimized clinical performance of growth hormone with an expanded genetic code" 108 : 9060-9065, 2011

    9 Ji Yeol Roh ; Bon-Chul Koo ; Mo Sun Kwon ; Minjee Kim ; 김남형 ; 김태완, "Modification of Enhanced Green Fluorescent Protein for Secretion out of Cells" 한국생물공학회 18 (18): 1135-1141, 2013

    10 Futran, A. S., "Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking" 112 : 8590-8595, 2015

    11 Takimoto, J. K., "Improving orthogonal tRNA-synthetase recognition for efficient unnatural amino acid incorporation and application in mammalian cells" 5 : 931-934, 2009

    12 이욥테칼린 ; 오주연 ; 박중찬, "Improving amber suppression activity of an orthogonal pair of Saccharomyces cerevisiae tyrosyl-tRNA synthetase and a variant of E. coli initiator tRNA, fMam tRNACUA, for the efficient incorporation of unnatural amino acids" 한국미생물학회 54 (54): 420-427, 2018

    13 Ugwumba, I. N., "Improving a natural enzyme activity through incorporation of unnatural amino acids" 133 : 326-333, 2011

    14 Grünewald, J., "Immunochemical termination of self-tolerance" 105 : 11276-11280, 2008

    15 Jumper, J., "Highly accurate protein structure prediction with AlphaFold" 596 : 583-589, 2021

    16 Cheng, Z., "Fluorescent amino acids as versatile building blocks for chemical biology" 4 : 275-290, 2020

    17 Wang, L., "Expanding the genetic code of Escherichia coli" 292 : 498-500, 2001

    18 Guo, J., "Evolution of amber suppressor tRNAs for efficient bacterial production of proteins containing nonnatural amino acids" 48 : 9148-9151, 2009

    19 Ryu, Y., "Efficient incorporation of unnatural amino acids into proteins in Escherichia coli" 3 : 263-265, 2006

    20 Biddle, W., "Directed evolution pipeline for the improvement of orthogonal translation machinery for genetic code expansion at sense codons" 10 : 815788-, 2022

    21 Zhang, Y., "Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for Omethyl-L-tyrosine" 14 : 1340-1349, 2005

    22 Jebamani Petrina ; SOKALINGAM SRIRAM ; SRIRAMULU DINESH KUMAR ; 정상택 ; 이선구, "Assessment of Computational Modeling of Fc-Fc Receptor Binding Through Protein-protein Docking Tool" 한국생물공학회 25 (25): 734-741, 2020

    23 Chen, J., "Applications of genetic code expansion in studying protein post-translational modification" 434 : 167424-, 2022

    24 Anderson, J. C., "An expanded genetic code with a functional quadruplet codon" 101 : 7566-7571, 2004

    25 Young, T. S., "An enhanced system for unnatural amino acid mutagenesis in E. coli" 395 : 361-374, 2010

    26 Goodman, H. M., "Amber suppression: a nucleotide change in the anticodon of a tyrosine transfer RNA" 217 : 1019-1024, 1968

    27 Chin, J. W., "Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli" 124 : 9026-9027, 2002

    28 Wang, L., "A new functional suppressor tRNA/aminoacyl−tRNA synthetase pair for the in vivo incorporation of unnatural amino acids into proteins" 122 : 5010-5011, 2000

    29 Wang, L., "A general approach for the generation of orthogonal tRNAs" 8 : 883-890, 2001

    30 Guan, D., "A click chemistry approach to site-specific immobilization of a small laccase enables efficient direct electron transfer in a biocathode" 51 : 2522-2525, 2015

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