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      Long non-coding RNAs : methods and protocols

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      https://www.riss.kr/link?id=M14060924

      • 저자
      • 발행사항

        New York : Humana Press : Springer, c2016

      • 발행연도

        2016

      • 작성언어

        영어

      • 주제어
      • DDC

        572.8/8 판사항(23)

      • ISBN

        9781493933761
        9781493933785 (electronic bk.)
        1493933787 (electronic bk.)

      • 자료형태

        단행본(다권본)

      • 발행국(도시)

        New York(State)

      • 서명/저자사항

        Long non-coding RNAs : methods and protocols / edited by Yi Feng, Lin Zhang.

      • 형태사항

        xii, 298 p. : ill. (chiefly color) ; 27 cm.

      • 총서사항

        Methods in molecular biology ; 1402 Springer protocols Methods in molecular biology (Clifton, N.J.) ; v. 1402. Springer protocols.

      • 일반주기명

        Includes bibliographical references and index.
        LncRNA pulldown combined with mass spectrometry to identify the novel LncRNA-associated proteins / Zhen Xing, Chunru Lin, and Liuqing Yang -- Cross-linking immunoprecipitation and qPCR (CLIP-qPCR) analysis to map interactions between long noncoding RNAs and RNA-binding proteins / Je-Hyun Yoon and Myriam Gorospe -- Characterization of long noncoding RNA-associated proteins by RNA-immunoprecipitation / Youyou Zhang [and others] -- Isolation of protein complexes associated with long noncoding RNAs / Kiranmai Gumireddy, Jinchun Yan, and Qihong Huang -- Profiling long noncoding RNA expression using custom-designed microarray / Xinna Zhang [and others] -- Long noncoding RNA expression profiling using arraystar LncRNA microarrays / Yanggu Shi and Jindong Shang -- Nuclear RNA isolation and sequencing / Navroop K. Dhaliwal and Jennifer A. Mitchell -- Targeted LncRNA sequencing with the SeqCap RNA enrichment system / John C. Tan [and others] -- ChIP-Seq : library preparation and sequencing / Karyn L. Sheaffer and Jonathan Schug -- Stellaris® RNA fluorescence in situ hybridization for the simultaneous detection of immature and mature long noncoding RNAs in adherent cells / Arturo V. Orjalo Jr. and Hans E. Johansson -- Simultaneous RNA-DNA FISH / Lan-Tian Lai [and others] -- Visualizing long noncoding RNAs on chromatin / Michael Hinten [and others] -- Non-isotopic method for in situ LncRNA visualization and quantitation / Botoul Maqsodi and Corina Nikoloff -- Detection of long noncoding RNA expression by nonradioactive northern blots / Xiaowen Hu [and others] -- Assessment of in vivo SiRNA delivery in cancer mouse models / Hiroto Hatakeyama [and others] -- Targeting long noncoding RNA with antisense oligonucleotide technology as cancer therapeutics / Tianyuan Zhou, Youngsoo Kim, and A. Robert MacLeod -- Characterization of circular RNAs / Yang Zhang, Li Yang, and Ling-Ling Chen -- Methods for characterization of alternative RNA splicing / Samuel E. Harvey and Chonghui Cheng -- NONCODEv4 : annotation of noncoding RNAs with emphasis on long noncoding RNAs / Yi Zhao, Jiao Yuan, and Runsheng Chen -- Computational analysis of LncRNA from cDNA sequences / Susan Boerner and Karen M. McGinnis -- Analyzing MiRNA-LncRNA interactions / Maria D. Paraskevopoulou and Artemis G. Hatzigeorgiou -- Long noncoding RNAs : an overview / Dongmei Zhang [and others].

      • 소장기관
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      목차 (Table of Contents)

      • CONTENTS
      • Preface = v
      • Contributors = ix
      • 1 LncRNA Pulldown Combined with Mass Spectrometry to Identify the Novel LncRNA-Associated Proteins / Zhen Xing ; Chunru Lin ; Liuqing Yang = 1
      • 2 Cross-Linking Immunoprecipitation and qPCR(CLIP-qPCR) Analysis to Map Interactions Between Long Noncoding RNAs and RNA-Binding Proteins / Je-Hyun Yoon ; Myriam Gorospe = 11
      • CONTENTS
      • Preface = v
      • Contributors = ix
      • 1 LncRNA Pulldown Combined with Mass Spectrometry to Identify the Novel LncRNA-Associated Proteins / Zhen Xing ; Chunru Lin ; Liuqing Yang = 1
      • 2 Cross-Linking Immunoprecipitation and qPCR(CLIP-qPCR) Analysis to Map Interactions Between Long Noncoding RNAs and RNA-Binding Proteins / Je-Hyun Yoon ; Myriam Gorospe = 11
      • 3 Characterization of Long Noncoding RNA-Associated Proteins by RNA-Immunoprecipitation / Youyou Zhang ; Yi Feng ; Zhongyi Hu ; Xiaowen Hu ; Chao-Xing Yuan ; Yi Fan ; Lin Zhang = 19
      • 4 Isolation of Protein Complexes Associated with Long Noncoding RNAs / Kiranmai Gumireddy ; Jinchun Yan ; Qihong Huang = 27
      • 5 Profiling Long Noncoding RNA Expression Using Custom-Designed Microarray / Xinna Zhang ; Gabriel Lopez-Berestein ; Anil K. Sood ; George A. Calin = 33
      • 6 Long Noncoding RNA Expression Profiling Using Arraystar LncRNA Microarrays / Yanggu Shi ; Jindong Shang = 43
      • 7 Nuclear RNA Isolation and Sequencing / Navroop K. Dhaliwal ; Jennifer A. Mitchell = 63
      • 8 Targeted LncRNA Sequencing with the SeqCap RNA Enrichment System / John C. Tan ; Venera D. Bouriakov ; Liang Feng ; Todd A. Richmond ; Daniel Burgess = 73
      • 9 ChIP-Seq : Library Preparation and Sequencing / Karyn L. Sheaffer ; Jonathan Schug = 101
      • 10 Stellaris® RNA Fluorescence In Situ Hybridization for the Simultaneous Detection of Immature and Mature Long Noncoding RNAs in Adherent Cells / Arturo V. Orjalo Jr. ; Hans E. Johansson = 119
      • 11 Simultaneous RNA-DNA FISH / Lan-Tian Lai ; Zhenyu Meng ; Fangwei Shao ; Li-Feng Zhang = 135
      • 12 Visualizing Long Noncoding RNAs on Chromatin / Michael Hinten ; Emily Maclary ; Srimonta Gayen ; Clair Harris ; Sundeep Kalantry = 147
      • 13 Non-Isotopic Method for In Situ LncRNA Visualization and Quantitation / Botoul Maqsodi ; Corina Nikoloff = 165
      • 14 Detection of Long Noncoding RNA Expression by Nonradioactive Northern Blots / Xiaowen Hu ; Yi Feng ; Zhongyi Hu ; Youyou Zhang ; Chao-Xing Yuan ; Xiaowei Xu ; Lin Zhang = 177
      • 15 Assessment of In Vivo SiRNA Delivery in Cancer Mouse Models / Hiroto Hatakeyama ; Sherry Y. Wu ; Lingegowda S. Mangala ; Gabriel Lopez-Berestein ; Anil K. Sood = 189
      • 16 Targeting Long Noncoding RNA with Antisense Oligonucleotide Technology as Cancer Therapeutics / Tianyuan Zhou ; Youngsoo Kim ; A. Robert MacLeod = 199
      • 17 Characterization of Circular RNAs / Yang Zhang ; Li Yang ; Ling-Ling Chen = 215
      • 18 Methods for Characterization of Alternative RNA Splicing / Samuel E. Harvey ; Chonghui Cheng = 229
      • 19 NONCODEv4 : Annotation of Noncoding RNAs with Emphasis on Long Noncoding RNAs / Yi Zhao ; Jiao Yuan ; Runsheng Chen = 243
      • 20 Computational Analysis of LncRNA from cDNA Sequences / Susan Boerner ; Karen M. McGinnis = 255
      • 21 Analyzing MiRNA-LncRNA Interactions / Maria D. Paraskevopoulou ; Artemis G. Hatzigeorgiou = 271
      • 22 Long Noncoding RNAs : An Overview / Dongmei Zhang ; Minmin Xiong ; Congjian Xu ; Peng Xiang ; Xiaomin Zhong = 287
      • Index = 297
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