In this study we perform a computer simulation for molecular recognition of calix[6]arene ester derivatives. We use molecular mechanics with ?? force field, and local charge of atoms which is used to calculate electrostatic energy term is calculated M...
In this study we perform a computer simulation for molecular recognition of calix[6]arene ester derivatives. We use molecular mechanics with ?? force field, and local charge of atoms which is used to calculate electrostatic energy term is calculated MPEOE method. Complexation of host and guest molecule is simulated by molecular dynamics. As a result, in the complexation of host and guest molecules, hydrogen bonding of carbonyl oxygen and ammonium ion is very important. And we can also find the most stable conformation of host molecule which can make a complex with ammonium ion as a guest molecule.