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      SCIE KCI등재 SCOPUS

      Heating of Freeze-dried Protein Samples with Urea for SDS-PAGE in Proteomics Study = Heating of Freeze-dried Protein Samples with Urea for SDS-PAGE in Proteomics Study

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      https://www.riss.kr/link?id=A82534716

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      다국어 초록 (Multilingual Abstract)

      Though urea helps solubilize the protein samples, use of urea under the boiling condition is generally avoided due to carbamylation of protein by cyanate in equilibrium with urea. Validity of adding urea in standard sample buffer and subjecting the standard protein, bovine serum albumin, to SDS-PAGE according to Laemmli procedure, which invariably involves heating of the protein sample at 100oC, was evaluated. Heating samples with crystalline ultra-pure urea improved separation, and the peptide mass fingerprint of the gel-separated protein by matrixassisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometer (MALDI TOF/ TOF MS) indicated that the protein could be identified without difficulty with 39.2% of peptide coverage, which was comparable to the value obtained from the protein not treated with urea.
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      Though urea helps solubilize the protein samples, use of urea under the boiling condition is generally avoided due to carbamylation of protein by cyanate in equilibrium with urea. Validity of adding urea in standard sample buffer and subjecting the st...

      Though urea helps solubilize the protein samples, use of urea under the boiling condition is generally avoided due to carbamylation of protein by cyanate in equilibrium with urea. Validity of adding urea in standard sample buffer and subjecting the standard protein, bovine serum albumin, to SDS-PAGE according to Laemmli procedure, which invariably involves heating of the protein sample at 100oC, was evaluated. Heating samples with crystalline ultra-pure urea improved separation, and the peptide mass fingerprint of the gel-separated protein by matrixassisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometer (MALDI TOF/ TOF MS) indicated that the protein could be identified without difficulty with 39.2% of peptide coverage, which was comparable to the value obtained from the protein not treated with urea.

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      참고문헌 (Reference)

      1 Cañas B, "Trends in sample preparation for classical and second generation proteomics" 1153 : 235-258, 2007

      2 Soulie S, "Treatment with crystalline ultra-pure urea reduces the aggregation of integral membrane proteins without inhibiting N-terminal sequencing" 124 : 417-420, 1998

      3 Bennion BJ, "The molecular basis for the chemical denaturation of proteins by urea" 100 : 5142-5147, 2003

      4 Dirnhuber P, "The isomeric transformation of urea into ammonium cyanate in aqueous solutions" 42 : 628-632, 1948

      5 Jin-Hwan Choi, "The Effect of DTT in Protein Preparations for Proteomic Analysis: Removal of a Highly Abundant Plant Enzyme, Ribulose Bisphosphate Carboxylase/Oxygenase" 한국식물학회 51 (51): 297-301, 2008

      6 Syrový I, "Staining and quantification of proteins separated by polyacrylamide gel electrophoresis" 569 : 175-196, 1991

      7 Righetti PG, "Real and imaginary artefacts in proteome analysis via two-dimensional maps" 841 : 14-22, 2006

      8 Stark GR, "Reactions of the cyanate present in aqueous urea with amino acids and proteins" 235 : 3177-3181, 1960

      9 Stark GR, "Reactions of cyanate with functional groups of proteins.III.Reactions with amino and carboxyl groups" 4 : 1030-1036, 1965

      10 Kim ST, "Proteome analysis of rice blast fungus (Magnaporthe grisea) proteome during appressorium formation" WILEY-V C H VERLAG GMBH 4 (4): 3579-3587, 2004

      1 Cañas B, "Trends in sample preparation for classical and second generation proteomics" 1153 : 235-258, 2007

      2 Soulie S, "Treatment with crystalline ultra-pure urea reduces the aggregation of integral membrane proteins without inhibiting N-terminal sequencing" 124 : 417-420, 1998

      3 Bennion BJ, "The molecular basis for the chemical denaturation of proteins by urea" 100 : 5142-5147, 2003

      4 Dirnhuber P, "The isomeric transformation of urea into ammonium cyanate in aqueous solutions" 42 : 628-632, 1948

      5 Jin-Hwan Choi, "The Effect of DTT in Protein Preparations for Proteomic Analysis: Removal of a Highly Abundant Plant Enzyme, Ribulose Bisphosphate Carboxylase/Oxygenase" 한국식물학회 51 (51): 297-301, 2008

      6 Syrový I, "Staining and quantification of proteins separated by polyacrylamide gel electrophoresis" 569 : 175-196, 1991

      7 Righetti PG, "Real and imaginary artefacts in proteome analysis via two-dimensional maps" 841 : 14-22, 2006

      8 Stark GR, "Reactions of the cyanate present in aqueous urea with amino acids and proteins" 235 : 3177-3181, 1960

      9 Stark GR, "Reactions of cyanate with functional groups of proteins.III.Reactions with amino and carboxyl groups" 4 : 1030-1036, 1965

      10 Kim ST, "Proteome analysis of rice blast fungus (Magnaporthe grisea) proteome during appressorium formation" WILEY-V C H VERLAG GMBH 4 (4): 3579-3587, 2004

      11 Delahunty C, "Protein identification using 2D-LC-MS/MS" 35 : 248-255, 2005

      12 Sarnighausen E, "Mapping of the Physcomitrella patens proteome" 65 : 1589-1607, 2004

      13 Carpentier SC, "Lyophilization,a practical way to store and transport tissues prior to protein extraction for 2DE analysis" 7 : 64-69, 2007

      14 Feiz L, "Evaluation of cell wall preparations for proteomics:A new procedure for purifying cell walls from Arabidopsis hypocotyls" 2 : 10-22, 2006

      15 박숙영, "Diversity of Pathotypes and DNA Fingerprint Haplotypes in Populations of Magnaporthe grisea in Korea over Two Decades" 93 (93): 1378-1385, 200311

      16 Laemmli UK, "Cleavage of structural proteins during the assembly of the head of bacteriophage T4" 227 : 680-685, 1970

      17 McCarthy J, "Carbamylation of proteins in 2-D electrophoresis:myth or reality" 2 : 239-242, 2003

      18 Lippincott J, "Carbamylation of cysteine:A potential artifact in peptide mapping of hemoglobins in the presence of urea" 267 : 57-64, 1999

      19 Bradford MM, "A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding" 72 : 248-254, 1976

      20 Goodno CC, "A fluorimetric assay for available lysine in proteins" 115 : 203-211, 1981

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      공동연구자 (7)

      유사연구자 (20) 활용도상위20명

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2015-12-30 학술지명변경 한글명 : Journal of the Korean Society for Applied Biological Chemistry -> Applied Biological Chemistry
      외국어명 : Journal of the Korean Society for Applied Biological Chemistry -> Applied Biological Chemistry
      KCI등재
      2010-05-06 학술지명변경 한글명 : 한국응용생명화학회지 -> Journal of the Korean Society for Applied Biological Chemistry KCI등재
      2010-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2006-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2001-07-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      1999-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.81 0.21 0.61
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.49 0.43 0.422 0.06
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