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      KCI등재 SCOPUS SCIE

      Structure of the Catalytic Domain of Protein Tyrosine Phosphatase Sigma in the Sulfenic Acid Form

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      https://www.riss.kr/link?id=A103928092

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      다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

      Protein tyrosine phosphatase sigma (PTP) plays a vital role in neural development. The extracellular domain of PTP binds to various proteoglycans, which control the activity of 2 intracellular PTP domains (D1 and D2). To understand the regulatory mechanism of PTP, we carried out structural and biochemical analyses of PTP D1D2. In the crystal structure analysis of a mutant form of D1D2 of PTP, we unexpectedly found that the catalytic cysteine of D1 is oxidized to cysteine sulfenic acid, while that of D2 remained in its reduced form, sug-gesting that D1 is more sensitive to oxidation than D2. This finding contrasts previous observations on PTP. The cysteine sulfenic acid of D1 was further confirmed by immunoblot and mass spectrometric analyses. The stabilization of the cysteine sulfenic acid in the active site of PTP suggests that the formation of cysteine sulfenic acid may function as a stable intermediate during the redox-regulation of PTPs.
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      Protein tyrosine phosphatase sigma (PTP) plays a vital role in neural development. The extracellular domain of PTP binds to various proteoglycans, which control the activity of 2 intracellular PTP domains (D1 and D2). To understand the regulator...

      Protein tyrosine phosphatase sigma (PTP) plays a vital role in neural development. The extracellular domain of PTP binds to various proteoglycans, which control the activity of 2 intracellular PTP domains (D1 and D2). To understand the regulatory mechanism of PTP, we carried out structural and biochemical analyses of PTP D1D2. In the crystal structure analysis of a mutant form of D1D2 of PTP, we unexpectedly found that the catalytic cysteine of D1 is oxidized to cysteine sulfenic acid, while that of D2 remained in its reduced form, sug-gesting that D1 is more sensitive to oxidation than D2. This finding contrasts previous observations on PTP. The cysteine sulfenic acid of D1 was further confirmed by immunoblot and mass spectrometric analyses. The stabilization of the cysteine sulfenic acid in the active site of PTP suggests that the formation of cysteine sulfenic acid may function as a stable intermediate during the redox-regulation of PTPs.

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      참고문헌 (Reference)

      1 Klomsiri, C, "Use of dimedone-based chemical probes for sulfenic acid detection evaluation of conditions affecting probe incorporation into redox-sensitive proteins" 473 : 77-94, 2010

      2 Crump, K.E, "The reversible formation of cysteine sulfenic acid promotes B-cell activation and proliferation" 42 : 2152-2164, 2012

      3 Liu, W, "The INAD scaffold is a dynamic, redoxregulated modulator of signaling in the Drosophila eye" 145 : 1088-1101, 2011

      4 Ryu, S.E, "Structural mechanism of disulphide bond-mediated redox switches" 151 : 579-588, 2012

      5 Almo, S.C, "Structural genomics of protein phosphatases" 8 : 121-140, 2007

      6 Nam, H.J, "Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45" 201 : 441-452, 2005

      7 Bilwes, A.M, "Structural basis for inhibition of receptor protein-tyrosine phosphatasealpha by dimerization" 382 : 555-559, 1996

      8 Yang, J, "Reversible oxidation of the membrane distal domain of receptor PTPalpha is mediated by a cyclic sulfenamide" 46 : 709-719, 2007

      9 Anindya Ganguly, "Regulation of the Polarity of Protein Trafficking by Phosphorylation" 한국분자세포생물학회 33 (33): 423-430, 2012

      10 Salmeen, A, "Redox regulation of protein tyrosine phosphatase 1B involves a sulphenyl-amide intermediate" 423 : 769-773, 2003

      1 Klomsiri, C, "Use of dimedone-based chemical probes for sulfenic acid detection evaluation of conditions affecting probe incorporation into redox-sensitive proteins" 473 : 77-94, 2010

      2 Crump, K.E, "The reversible formation of cysteine sulfenic acid promotes B-cell activation and proliferation" 42 : 2152-2164, 2012

      3 Liu, W, "The INAD scaffold is a dynamic, redoxregulated modulator of signaling in the Drosophila eye" 145 : 1088-1101, 2011

      4 Ryu, S.E, "Structural mechanism of disulphide bond-mediated redox switches" 151 : 579-588, 2012

      5 Almo, S.C, "Structural genomics of protein phosphatases" 8 : 121-140, 2007

      6 Nam, H.J, "Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45" 201 : 441-452, 2005

      7 Bilwes, A.M, "Structural basis for inhibition of receptor protein-tyrosine phosphatasealpha by dimerization" 382 : 555-559, 1996

      8 Yang, J, "Reversible oxidation of the membrane distal domain of receptor PTPalpha is mediated by a cyclic sulfenamide" 46 : 709-719, 2007

      9 Anindya Ganguly, "Regulation of the Polarity of Protein Trafficking by Phosphorylation" 한국분자세포생물학회 33 (33): 423-430, 2012

      10 Salmeen, A, "Redox regulation of protein tyrosine phosphatase 1B involves a sulphenyl-amide intermediate" 423 : 769-773, 2003

      11 Groen, A, "Redox regulation of dimerization of the receptor proteintyrosine phosphatases RPTPalpha, LAR, RPTPmu and CD45" 275 : 2597-2604, 2008

      12 Lee, C, "Redox regula-tion of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path" 11 : 1179-1185, 2004

      13 Tonks, N.K., "Redox redux: revisiting PTPs and the control of cell signaling" 121 : 667-670, 2005

      14 Coles, C.H, "Proteoglycan-specific molecular switch for RPTPsigma clustering and neuronal extension" 332 : 484-488, 2011

      15 Tabernero, L, "Protein tyrosine phosphatases: structure-function relationships" 275 : 867-882, 2008

      16 Tonks, N.K., "Protein tyrosine phosphatases: from genes, to function, to disease" 7 : 833-846, 2006

      17 Alonso, A, "Protein tyrosine phosphatases in the human genome" 117 : 699-711, 2004

      18 Sivaramakrishnan, S, "Protection of a single-cysteine redox switch from oxidative destruction: on the functional role of sulfenyl amide formation in the redox-regulated enzyme PTP1B" 20 : 444-447, 2010

      19 Otwinowski, Z, "Processing of X-ray diffraction data collected in oscillation mode. Methods in Enzymology Vol. 276, Macromolecular Crystallography, part A" Academic Press 307-326, 1997

      20 Persson, C, "Preferential oxidation of the second phosphatase domain of receptor-like PTP-alpha revealed by an antibody against oxidized protein tyrosine phosphatases" 101 : 1886-1891, 2004

      21 Shen, Y, "PTPsigma is a receptor for chondroitin sulfate proteoglycan, an inhibitor of neural regeneration" 326 : 592-596, 2009

      22 van Montfort, R.L, "Oxidation state of the active-site cysteine in protein tyrosine phosphatase 1B" 423 : 773-777, 2003

      23 Nakamura, T, "Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate" 105 : 6238-6242, 2008

      24 Winn, M.D, "Overview of the CCP4 suite and current developments. Acta Crystallogr" 67 : 235-242, 2011

      25 Wallace, M.J, "Neuronal defects and posterior pituitary hypoplasia in mice lacking the receptor tyrosine phosphatase PTPsigma" 21 : 334-338, 1999

      26 Elchebly, M, "Neuroendocrine dysplasia in mice lacking protein tyrosine phosphatase sigma" 21 : 330-333, 1999

      27 Siu, R, "N-cadherin is an in vivo substrate for protein tyrosine phosphatase sigma (PTPsigma) and participates in PTPsigma-mediated inhibition of axon growth" 27 : 208-219, 2007

      28 Yoo, S.K, "Lyn is a redox sensor that mediates leukocyte wound attraction in vivo" 480 : 109-112, 2011

      29 Salsbury, F.R, "Functional site profiling and electrostatic analysis of cysteines modifiable to cysteine sulfenic acid" 17 : 299-312, 2008

      30 Emsley, P, "Features and development of Coot. Acta Crystallogr" 66 : 486-501, 2010

      31 Piana, S, "Evaluating the effects of cutoffs and treatment of long-range electrostatics in protein folding simulations" 7 : e39918-, 2012

      32 Blaskovich, M.A., "Drug discovery and protein tyrosine phosphatases" 16 : 2095-2176, 2009

      33 Jiang, G, "Dimerization inhibits the activity of receptor-like proteintyrosine phosphatase-alpha" 401 : 606-610, 1999

      34 Nam, H.J, "Crystal structure of the tandem phosphatase domains of RPTP LAR" 97 : 449-457, 1999

      35 Choi, H.J, "Crystal structure of a novel human peroxidase enzyme at 2.0 A resolution" 5 : 400-406, 1998

      36 Chiu, J, "Cell cycle sensing of oxidative stress in Saccharomyces cerevisiae by oxidation of a specific cysteine residue in the transcription factor Swi6p" 286 : 5204-5214, 2011

      37 Zhou, A, "A redox switch in angiotensinogen modulates angiotensin release" 468 : 108-111, 2010

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