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      KCI등재 SCIE SCOPUS

      Evaluation of PCR inhibitory effect of enrichment broths and comparison of DNA extraction methods for detection of Salmonella Enteritidis using real-time PCR assay

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      https://www.riss.kr/link?id=A103915645

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      다국어 초록 (Multilingual Abstract)

      The best enrichment broth and DNA extraction scheme was determined for rapid and sensitive detection of Salmonella Enteritidis in steamed pork using real-time PCR. The inhibitory effect of commonly used Salmonella enrichment broths, Rappaport-Vassiliadis (RV) and Muller-Kauffmann tetrathionate with novobiocin (MKTTn), on real-time PCR was confirmed. The inhibition of PCR was statistically significant (p < 0.05) in RV and MKTTn, as compared with buffered peptone water (BPW) or phosphate-buffered saline. The inhibitory effect of the selective enrichment media was successfully removed by using a modified DNA extraction, PrepMan Ultra Reagent with an additional washing step or the DNeasy Tissue Kit. In three experiments, when applied to detection of Salmonella Enteritidis in steamed pork, the real-time PCR coupled with single 24 h enrichment with BPW performed better than double 48 h enrichment with BPW plus RV or MKTTn. The simple real-time PCR assay using BPW proved to be a rapid and sensitive test for detection of low concentrations of Salmonella Enteritidis in steamed pork samples as compared with the conventional culture method.
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      The best enrichment broth and DNA extraction scheme was determined for rapid and sensitive detection of Salmonella Enteritidis in steamed pork using real-time PCR. The inhibitory effect of commonly used Salmonella enrichment broths, Rappaport-Vassilia...

      The best enrichment broth and DNA extraction scheme was determined for rapid and sensitive detection of Salmonella Enteritidis in steamed pork using real-time PCR. The inhibitory effect of commonly used Salmonella enrichment broths, Rappaport-Vassiliadis (RV) and Muller-Kauffmann tetrathionate with novobiocin (MKTTn), on real-time PCR was confirmed. The inhibition of PCR was statistically significant (p < 0.05) in RV and MKTTn, as compared with buffered peptone water (BPW) or phosphate-buffered saline. The inhibitory effect of the selective enrichment media was successfully removed by using a modified DNA extraction, PrepMan Ultra Reagent with an additional washing step or the DNeasy Tissue Kit. In three experiments, when applied to detection of Salmonella Enteritidis in steamed pork, the real-time PCR coupled with single 24 h enrichment with BPW performed better than double 48 h enrichment with BPW plus RV or MKTTn. The simple real-time PCR assay using BPW proved to be a rapid and sensitive test for detection of low concentrations of Salmonella Enteritidis in steamed pork samples as compared with the conventional culture method.

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      참고문헌 (Reference)

      1 Monteiro L, "polysaccharides as PCR inhibitors in feces: Helicobacter pylori model" 35 : 995-998, 1997

      2 Wiedbrauk DL, "Werner JC, Drevon AM. Inhibition of PCR by aqueous and vitreous fluids" 33 : 2643-2646, 1995

      3 Bansal NS, "Validated PCR assay for the routine detection of Salmonella in food" 69 : 282-287, 2006

      4 Malorny B, "Toward standardization of diagnostic PCR testing of fecal samples: lessons from the detection of Salmonellae in pigs" 43 : 3033-3037, 2005

      5 Myint MS, "The effect of pre-enrichment protocol on the sensitivity and specificity of PCR for detection of naturally contaminated Salmonella in raw poultry compared to conventional culture" 23 : 599-604, 2006

      6 Hughes D, "Salmonella in foods: new enrichment procedure for TECRA Salmonella Visual Immunoassay using a single rv(R10) only, TT only, or dual rv(R10) and TT selective enrichment broths (AOAC official method 998.09): collaborative study" 86 : 775-790, 2003

      7 Wilde J, "Removal of inhibitory substances from human fecal specimens for detection of group A rotaviruses by reverse transcriptase and polymerase chain reactions" 28 : 1300-1307, 1990

      8 Uyttendaele MR, "Prevalence of Salmonella in poultry carcasses and their products in Belgium" 40 : 1-8, 1998

      9 Culp SJ, "Mutagenicity and carcinogenicity in relation to DNA adduct formation in rats fed leucomalachite green" 506 : 55-63, 2002

      10 Maher N, "Magnetic bead capture eliminates PCR inhibitors in samples collected from the airborne environment, permitting detection of Pneumocystis carinii DNA" 67 : 449-452, 2001

      1 Monteiro L, "polysaccharides as PCR inhibitors in feces: Helicobacter pylori model" 35 : 995-998, 1997

      2 Wiedbrauk DL, "Werner JC, Drevon AM. Inhibition of PCR by aqueous and vitreous fluids" 33 : 2643-2646, 1995

      3 Bansal NS, "Validated PCR assay for the routine detection of Salmonella in food" 69 : 282-287, 2006

      4 Malorny B, "Toward standardization of diagnostic PCR testing of fecal samples: lessons from the detection of Salmonellae in pigs" 43 : 3033-3037, 2005

      5 Myint MS, "The effect of pre-enrichment protocol on the sensitivity and specificity of PCR for detection of naturally contaminated Salmonella in raw poultry compared to conventional culture" 23 : 599-604, 2006

      6 Hughes D, "Salmonella in foods: new enrichment procedure for TECRA Salmonella Visual Immunoassay using a single rv(R10) only, TT only, or dual rv(R10) and TT selective enrichment broths (AOAC official method 998.09): collaborative study" 86 : 775-790, 2003

      7 Wilde J, "Removal of inhibitory substances from human fecal specimens for detection of group A rotaviruses by reverse transcriptase and polymerase chain reactions" 28 : 1300-1307, 1990

      8 Uyttendaele MR, "Prevalence of Salmonella in poultry carcasses and their products in Belgium" 40 : 1-8, 1998

      9 Culp SJ, "Mutagenicity and carcinogenicity in relation to DNA adduct formation in rats fed leucomalachite green" 506 : 55-63, 2002

      10 Maher N, "Magnetic bead capture eliminates PCR inhibitors in samples collected from the airborne environment, permitting detection of Pneumocystis carinii DNA" 67 : 449-452, 2001

      11 Rossen L, "Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions" 17 : 37-45, 1992

      12 Wilson IG, "Inhibition and facilitation of nucleic acid amplification" 63 : 3741-3751, 1997

      13 Oliveira SD, "Evaluation of selective and non-selective enrichment PCR procedures for Salmonella detection" 36 : 217-221, 2003

      14 Uyttendaele M, "Evaluation of real-time PCR vs automated ELISA and a conventional culture method using a semi-solid medium for detection of Salmonella" 37 : 386-391, 2003

      15 Malorny B, "Diagnostic real-time PCR for detection of Salmonella in food" 70 : 7046-7052, 2004

      16 Rodríguez-Lázaro D, "Construction strategy for an internal amplification control for real-time diagnostic assays using nucleic Acid sequencebased amplification: development and clinical application" 42 : 5832-5836, 2004

      17 Heller LC, "Comparison of methods for DNA isolation from food samples for detection of Shiga toxin-producing Escherichia coli by real-time PCR" 69 : 1844-1846, 2003

      18 Catarame TMG, "Comparison of a real-time polymerase chain reaction assay with a culture method for the detection of Salmonella in retail meat samples" 26 : 1-15, 2006

      19 Al-Soud WA, "Characterization of the PCR inhibitory effect of bile to optimize real-time PCR detection of Helicobacter species" 44 : 177-182, 2005

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      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2006-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2005-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2003-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 1.08 0.11 0.76
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.61 0.51 0.245 0.05
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